Carg25834 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25834
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionsuccinate dehydrogenase subunit 5, mitochondrial-like
LocationCarg_Chr12: 3115731 .. 3117872 (+)
RNA-Seq ExpressionCarg25834
SyntenyCarg25834
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATCACCCTCCACCCTCCGAAGTTGGCTTTCAATTTTGCAGTCCGAGGAAAAAGCGAAAGCGATGGAGAAAATGGTTGTTCTCAGATCACTATTGCGTTCTGTCCGCGCCGGATCTTACAGCATCGCCGGCGTCCGACACCGGAGTTTACTGCAAAGTCACTACCAGGCCGCTCGGAATTTCTCCTATATATCGTCGCCTCGTTCTTCTTTCTCAGATTCTCCGCTGAGAGTTTCTTATGGTACTCCTATTAATTTGTTGTATTCGTAATTTTGTTTTATAGATTCAAATGTCTCCGGATTGATTTTGCACGGAAGTGTGGGGTTTCTGACGAAGTTATGCACTGTTCTTTATTTAACTTATTTAATGATTGTTGATGTACTTGTGGATGCTTCTTCCTTCATCGAGTGTACATGCAGATGTATTTCTTTCAATTCAAAGTTTTGTTTGCTGTATTTGTACAGTAAATAGCTATATTCTTTGCTGTATTAATATTTATCATGAAGTCGACTGTGCGAGAAGCCTTCACAGTCTGCAATTTGTAGATAATTTTGTTGTGAAATATAAAATTTAAGCAATGCCTTTGTAAGAATTGCAAGAAAATCAATCTCGTATAGGAGAGCAAGGAATATCAAATGAAGTTTTAGAAGTCATTTACCTTTCCAAAACTGAATATCATTCCTGATACAAACATATAGTTTGATTAATTCGTAAAAGATAAGATCCATGGGAGAAGGTAAAAATTTCAACATGTTCTGTGCAGCAATTATGCGTTGTACAAATTTTATTGCCCCAACCTGCCACGATGATCTAGAGTGACTGAACAATCTACATAGACACTTCAATTCTTTTTTCAGTATTATAATGTTTGATAAGATATCATATTCATGTTTCATCTGGTAAATTTCTGCAGATTGTGGCTATCTATCTGGCGTAGGGCATGCTAGATTTTTTAGTGTTGATGTAGTTCATATGCCTACAATTGAAGATTCCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCCGCAAGTTGGGATAACCTTCCTGAGCCTGTTGTCTATGATGTGAAGGCAGCATTATCTGGAAGCACCAACGACGAGGCCGGAAAGGAAATTGTGGAAAATGTTTTCCGAGCAGCTGAAGCAGCCGAGGAGTTTGGTGGTATACTTACCAGCTTGAAAATGAAAATTGATGATAGCATTGGTCTTAGCGGCGAGGTATTGGAAACTATAGAATTATCAAATTAAAACCCCATTTGAAACCATTTAGTTCTTGAAAAAATCAAACTTATAGACACTACTTCCACCTATGAGTGTTTTTTTTTTTTTTTTGTTATCTATTTTGTAAAAATCTTAGTTTTGAATACTTAAAAAAGTAGTTTTTAAAAAGTATTTGGAATTTGTCTCTAAATTAAATTGTTTATTTTAAAATTGTGAAAACTATAAGAAAGAATTTGGGAGGAAACAAACATAAATTTAAAAAACAGAAACTAAAGACAAAATGGTTATTGAATGAGGCCTAAGTTACTTTCTTCTGCCATTTTTTATCGAGTAAAAACTTCTGAGTCCATCTGCAGGATGTTAAGCCTTTGTCCAATGAGCTTAAGAATGCACTACAGACGGTTCATGATCGCTATACTGCCTACTTGGATGCATTTGGTCCCGAGGAAAACTATCTGAAAAAGAAAGTGGAAACAGAGTTGGGAACAAAGATGATTCACTTGAAAATGAGATGCAGTGGCCTTGGATCTGAGTGGGGAAAGGTACGCAAATTCCGATATGTAATCTGGCAAAGAGCATAAATTTCATTGCATAGTTGCTTCGGAAACAGTCCACACATTTGTTCTAATAAATGAAATTGATCATTTGGTTTCGTTTACCATGTTTTCTTTTTTGTTTTATGACAGGTTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGAGCATAAATTTGGCTGTAATTGCAAGCTTCCGTTAGTTTGAGTGTATGTTCTTCAATGTTTTATTGTGCATCTTCTCTCAAAACCAATTAACCGTGGAGTTAATGGCAATTGAATAAGATCTCACCTTGAGGAATGAGTAAACAGAATTTAACATCCTCATTTGTTTACCAATTATTCGGTTTCT

mRNA sequence

CCATCACCCTCCACCCTCCGAAGTTGGCTTTCAATTTTGCAGTCCGAGGAAAAAGCGAAAGCGATGGAGAAAATGGTTGTTCTCAGATCACTATTGCGTTCTGTCCGCGCCGGATCTTACAGCATCGCCGGCGTCCGACACCGGAGTTTACTGCAAAGTCACTACCAGGCCGCTCGGAATTTCTCCTATATATCGTCGCCTCGTTCTTCTTTCTCAGATTCTCCGCTGAGAGTTTCTTATGATTGTGGCTATCTATCTGGCGTAGGGCATGCTAGATTTTTTAGTGTTGATGTAGTTCATATGCCTACAATTGAAGATTCCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCCGCAAGTTGGGATAACCTTCCTGAGCCTGTTGTCTATGATGTGAAGGCAGCATTATCTGGAAGCACCAACGACGAGGCCGGAAAGGAAATTGTGGAAAATGATGTTAAGCCTTTGTCCAATGAGCTTAAGAATGCACTACAGACGGTTCATGATCGCTATACTGCCTACTTGGATGCATTTGGTCCCGAGGAAAACTATCTGAAAAAGAAAGTGGAAACAGAGTTGGGAACAAAGATGATTCACTTGAAAATGAGATGCAGTGGCCTTGGATCTGAGTGGGGAAAGGTTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGAGCATAAATTTGGCTGTAATTGCAAGCTTCCGTTAGTTTGAGTGTATGTTCTTCAATGTTTTATTGTGCATCTTCTCTCAAAACCAATTAACCGTGGAGTTAATGGCAATTGAATAAGATCTCACCTTGAGGAATGAGTAAACAGAATTTAACATCCTCATTTGTTTACCAATTATTCGGTTTCT

Coding sequence (CDS)

ATGGAGAAAATGGTTGTTCTCAGATCACTATTGCGTTCTGTCCGCGCCGGATCTTACAGCATCGCCGGCGTCCGACACCGGAGTTTACTGCAAAGTCACTACCAGGCCGCTCGGAATTTCTCCTATATATCGTCGCCTCGTTCTTCTTTCTCAGATTCTCCGCTGAGAGTTTCTTATGATTGTGGCTATCTATCTGGCGTAGGGCATGCTAGATTTTTTAGTGTTGATGTAGTTCATATGCCTACAATTGAAGATTCCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCCGCAAGTTGGGATAACCTTCCTGAGCCTGTTGTCTATGATGTGAAGGCAGCATTATCTGGAAGCACCAACGACGAGGCCGGAAAGGAAATTGTGGAAAATGATGTTAAGCCTTTGTCCAATGAGCTTAAGAATGCACTACAGACGGTTCATGATCGCTATACTGCCTACTTGGATGCATTTGGTCCCGAGGAAAACTATCTGAAAAAGAAAGTGGAAACAGAGTTGGGAACAAAGATGATTCACTTGAAAATGAGATGCAGTGGCCTTGGATCTGAGTGGGGAAAGGTTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGAGCATAA

Protein sequence

MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRVSYDCGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTNDEAGKEIVENDVKPLSNELKNALQTVHDRYTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Homology
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BLAST of Carg25834 vs. NCBI nr
Match: KAG7020560.1 (Succinate dehydrogenase subunit 5, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 416.0 bits (1068), Expect = 1.9e-112
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0 

Query: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRVSYD 60
           MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRVSYD
Sbjct: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRVSYD 60

Query: 61  CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN 120
           CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN
Sbjct: 61  CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN 120

Query: 121 DEAGKEIVENDVKPLSNELKNALQTVHDRYTAYLDAFGPEENYLKKKVETELGTKMIHLK 180
           DEAGKEIVENDVKPLSNELKNALQTVHDRYTAYLDAFGPEENYLKKKVETELGTKMIHLK
Sbjct: 121 DEAGKEIVENDVKPLSNELKNALQTVHDRYTAYLDAFGPEENYLKKKVETELGTKMIHLK 180

Query: 181 MRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 211
           MRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 181 MRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 210

[Close]
BLAST of Carg25834 vs. NCBI nr
Match: KAG6585649.1 (Succinate dehydrogenase subunit 5, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 404.1 bits (1037), Expect = 7.6e-109
Identity = 203/207 (98.07%), Postives = 206/207 (99.52%), Query Frame = 0 

Query: 4   MVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRVSYDCGY 63
           MVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSY+SSPRSSFSDSP RVSYDCGY
Sbjct: 1   MVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYLSSPRSSFSDSPQRVSYDCGY 60

Query: 64  LSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTNDEA 123
           LSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTNDEA
Sbjct: 61  LSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTNDEA 120

Query: 124 GKEIVENDVKPLSNELKNALQTVHDRYTAYLDAFGPEENYLKKKVETELGTKMIHLKMRC 183
           GKEIVENDVKPLS+ELKNAL+TVHDRYTAYLDAFGPEENYLKKKVETELGTKMIHLKMRC
Sbjct: 121 GKEIVENDVKPLSDELKNALETVHDRYTAYLDAFGPEENYLKKKVETELGTKMIHLKMRC 180

Query: 184 SGLGSEWGKVSVLGTSGLSGSYVEQRA 211
           SGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 181 SGLGSEWGKVSVLGTSGLSGSYVEQRA 207

[Close]
BLAST of Carg25834 vs. NCBI nr
Match: XP_022951155.1 (succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 397.5 bits (1020), Expect = 7.1e-107
Identity = 209/241 (86.72%), Postives = 210/241 (87.14%), Query Frame = 0 

Query: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRVSYD 60
           MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQS+YQAARNFSYISSPRSSFSDSPLRVSYD
Sbjct: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSYYQAARNFSYISSPRSSFSDSPLRVSYD 60

Query: 61  CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN 120
           CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN
Sbjct: 61  CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN 120

Query: 121 DEAGKEIVEN-------------------------------DVKPLSNELKNALQTVHDR 180
           DEAGKEIVEN                               DVKPLSNELKNALQTVHDR
Sbjct: 121 DEAGKEIVENVFRAAEAAEEFGGILTSLKMKIDDSIGLSGEDVKPLSNELKNALQTVHDR 180

Query: 181 YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 211
           YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240

[Close]
BLAST of Carg25834 vs. NCBI nr
Match: XP_023001943.1 (succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 385.6 bits (989), Expect = 2.8e-103
Identity = 202/241 (83.82%), Postives = 206/241 (85.48%), Query Frame = 0 

Query: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRVSYD 60
           MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFS++SSPRSSFSDSP RVSYD
Sbjct: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSHLSSPRSSFSDSPQRVSYD 60

Query: 61  CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN 120
           CGYLSGVGHARFFSVDV HMPTIEDSKLQNAFKDLMAASWDNLPE VVYDVK ALSGSTN
Sbjct: 61  CGYLSGVGHARFFSVDVAHMPTIEDSKLQNAFKDLMAASWDNLPESVVYDVKVALSGSTN 120

Query: 121 DEAGKEIVEN-------------------------------DVKPLSNELKNALQTVHDR 180
           DEAGKEIVEN                               DVKPLS+ELKNALQTVHDR
Sbjct: 121 DEAGKEIVENVFRAAEASEEFGGILTSLKMKIDDSIGLSGEDVKPLSDELKNALQTVHDR 180

Query: 181 YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 211
           YT+YLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YTSYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240

[Close]
BLAST of Carg25834 vs. NCBI nr
Match: XP_023537918.1 (succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384.8 bits (987), Expect = 4.8e-103
Identity = 202/241 (83.82%), Postives = 206/241 (85.48%), Query Frame = 0 

Query: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRVSYD 60
           MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFS +SSPRSSFSDSP RVSYD
Sbjct: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSNLSSPRSSFSDSPQRVSYD 60

Query: 61  CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN 120
           CGYLSG GHARFFSVDV HMPTIEDSKL+NAFKDLMAASWD+LPEPVVYDVKAALSGSTN
Sbjct: 61  CGYLSGAGHARFFSVDVAHMPTIEDSKLRNAFKDLMAASWDDLPEPVVYDVKAALSGSTN 120

Query: 121 DEAGKEIVEN-------------------------------DVKPLSNELKNALQTVHDR 180
           DEAGKEIVEN                               DVKPLS+ELKNALQTVHDR
Sbjct: 121 DEAGKEIVENVFRAAEAAEEFGGILTSLKMKIDDSIGLSGEDVKPLSDELKNALQTVHDR 180

Query: 181 YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 211
           YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240

[Close]
BLAST of Carg25834 vs. ExPASy Swiss-Prot
Match: Q9SX77 (Succinate dehydrogenase subunit 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH5 PE=1 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 8.6e-47
Identity = 115/222 (51.80%), Postives = 135/222 (60.81%), Query Frame = 0 

Query: 25  RHRSLLQSHYQAARNFSYISS---PRSSFSDSPLRVSYDCGY--LSGVGHARFFSVDVVH 84
           RHR+L+      A N S I      + SF  S   VS D  Y    G+G  R FS DV H
Sbjct: 41  RHRTLI----TVAPNASVIGDVQINKGSFI-SYASVSRDLQYPRAMGMGQVRRFSEDVSH 100

Query: 85  MPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTNDEAGKEIVEN--------- 144
           MP +EDS + NAFKDLMAA W  LP  VV D K A+S +T+D+AG+E ++N         
Sbjct: 101 MPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKNVFRAAEAVE 160

Query: 145 ----------------------DVKPLSNELKNALQTVHDRYTAYLDAFGPEENYLKKKV 204
                                  VKPL N++ +AL+T + RY  YLD+F PEE YLKKKV
Sbjct: 161 EFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYLDSFEPEEVYLKKKV 220

Query: 205 ETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 211
           E ELGTKMIHLKMRCSGLGSEWGKV+VLGTSGLSGSYVEQRA
Sbjct: 221 EMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257

[Close]
BLAST of Carg25834 vs. ExPASy Swiss-Prot
Match: Q0JDA2 (Succinate dehydrogenase subunit 5, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH5 PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.7e-39
Identity = 83/171 (48.54%), Postives = 113/171 (66.08%), Query Frame = 0 

Query: 71  RFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTNDEAGKEIVEN 130
           R FS +  H+P I D ++++AFKDLMAASW  LP+ +V + K A S +T+D+AGKE + N
Sbjct: 61  RLFSSNEKHLPAISDPEVESAFKDLMAASWTGLPDSLVIEAKKAASKATDDKAGKEALLN 120

Query: 131 -------------------------------DVKPLSNELKNALQTVHDRYTAYLDAFGP 190
                                          +V PL   +++A+++ + RY  YL++FGP
Sbjct: 121 VFRAAEACEEFGGVLVTLRMALDDLCGITGENVGPLPGYIEDAVKSAYKRYMKYLESFGP 180

Query: 191 EENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 211
           EENYL+KKVE ELGTKMIHLKMRCSG+GSEWGK++++GTSG+SGSYVE RA
Sbjct: 181 EENYLRKKVENELGTKMIHLKMRCSGVGSEWGKITLIGTSGISGSYVELRA 231

[Close]
BLAST of Carg25834 vs. ExPASy TrEMBL
Match: A0A6J1GHW5 (succinate dehydrogenase subunit 5, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111454085 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 3.4e-107
Identity = 209/241 (86.72%), Postives = 210/241 (87.14%), Query Frame = 0 

Query: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRVSYD 60
           MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQS+YQAARNFSYISSPRSSFSDSPLRVSYD
Sbjct: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSYYQAARNFSYISSPRSSFSDSPLRVSYD 60

Query: 61  CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN 120
           CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN
Sbjct: 61  CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN 120

Query: 121 DEAGKEIVEN-------------------------------DVKPLSNELKNALQTVHDR 180
           DEAGKEIVEN                               DVKPLSNELKNALQTVHDR
Sbjct: 121 DEAGKEIVENVFRAAEAAEEFGGILTSLKMKIDDSIGLSGEDVKPLSNELKNALQTVHDR 180

Query: 181 YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 211
           YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240

[Close]
BLAST of Carg25834 vs. ExPASy TrEMBL
Match: A0A6J1KS18 (succinate dehydrogenase subunit 5, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111495971 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.4e-103
Identity = 202/241 (83.82%), Postives = 206/241 (85.48%), Query Frame = 0 

Query: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRVSYD 60
           MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFS++SSPRSSFSDSP RVSYD
Sbjct: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSHLSSPRSSFSDSPQRVSYD 60

Query: 61  CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN 120
           CGYLSGVGHARFFSVDV HMPTIEDSKLQNAFKDLMAASWDNLPE VVYDVK ALSGSTN
Sbjct: 61  CGYLSGVGHARFFSVDVAHMPTIEDSKLQNAFKDLMAASWDNLPESVVYDVKVALSGSTN 120

Query: 121 DEAGKEIVEN-------------------------------DVKPLSNELKNALQTVHDR 180
           DEAGKEIVEN                               DVKPLS+ELKNALQTVHDR
Sbjct: 121 DEAGKEIVENVFRAAEASEEFGGILTSLKMKIDDSIGLSGEDVKPLSDELKNALQTVHDR 180

Query: 181 YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 211
           YT+YLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YTSYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240

[Close]
BLAST of Carg25834 vs. ExPASy TrEMBL
Match: A0A6J1CS25 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014059 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.2e-88
Identity = 176/241 (73.03%), Postives = 191/241 (79.25%), Query Frame = 0 

Query: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRVSYD 60
           MEKM++LRSLLRSVR GSY +AGVRHR+LLQSH+QAAR+  ++SS RSS SDS  RVS D
Sbjct: 1   MEKMMILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSSD 60

Query: 61  CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN 120
           CGY SGVG  RFFSVDVVHMPTIEDSKLQN FKDLMA SWD LP  +VYDVKAALSGST+
Sbjct: 61  CGYPSGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD 120

Query: 121 DEAGKEIVEN-------------------------------DVKPLSNELKNALQTVHDR 180
           D+AGKE+VEN                               DVKPLS+ELKNAL TVHDR
Sbjct: 121 DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180

Query: 181 YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 211
           YT YLDAFGPEENYL+KKVETELGTKMI+LKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240

[Close]
BLAST of Carg25834 vs. ExPASy TrEMBL
Match: A0A6J1C282 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007602 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 8.0e-88
Identity = 176/241 (73.03%), Postives = 190/241 (78.84%), Query Frame = 0 

Query: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRVSYD 60
           MEKMV+LRSLLRSVR GSY +AGVRHR+LLQSH+QAAR+F Y+SS RSS SD P RVS D
Sbjct: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSSD 60

Query: 61  CGYLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTN 120
           C YLSGVG AR FSVDVV M TIEDSKLQN FKDLMA SWD LP  VVYDVKAALSGST+
Sbjct: 61  CCYLSGVGRARLFSVDVVRMATIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD 120

Query: 121 DEAGKEIVEN-------------------------------DVKPLSNELKNALQTVHDR 180
           D+AGKE+VEN                               DVKPLS+ELKNAL TVHDR
Sbjct: 121 DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180

Query: 181 YTAYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 211
           YT YLDAFGPEENYL+KKVET+LGTKMI+LK+RCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YTTYLDAFGPEENYLRKKVETDLGTKMIYLKIRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240

[Close]
BLAST of Carg25834 vs. ExPASy TrEMBL
Match: A0A6J1HCU3 (succinate dehydrogenase subunit 5, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111462814 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.8e-87
Identity = 181/239 (75.73%), Postives = 193/239 (80.75%), Query Frame = 0 

Query: 4   MVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSYISSPRSSFSDSPLRV-SYDCG 63
           MV+LRSLLRSVRA SY IAGV HR+LLQSH+QAAR+F  +SS RSSFSD P RV S DCG
Sbjct: 1   MVILRSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFPPRVSSADCG 60

Query: 64  YLSGVGHARFFSVDVVHMPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTNDE 123
           YLSGV HARFFSVDVV+MPTI D+KLQNAFKDLMAASWDNLPE VVYDVKAALSGST D+
Sbjct: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120

Query: 124 AGKEIVEN-------------------------------DVKPLSNELKNALQTVHDRYT 183
           AGKEIVEN                               DVKPLS+ELK ALQTV+DRYT
Sbjct: 121 AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180

Query: 184 AYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 211
           AYLDAFGPEENYL+KKVETELGTKMI+LKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239

[Close]
BLAST of Carg25834 vs. TAIR 10
Match: AT1G47420.1 (succinate dehydrogenase 5 )

HSP 1 Score: 188.3 bits (477), Expect = 6.1e-48
Identity = 115/222 (51.80%), Postives = 135/222 (60.81%), Query Frame = 0 

Query: 25  RHRSLLQSHYQAARNFSYISS---PRSSFSDSPLRVSYDCGY--LSGVGHARFFSVDVVH 84
           RHR+L+      A N S I      + SF  S   VS D  Y    G+G  R FS DV H
Sbjct: 41  RHRTLI----TVAPNASVIGDVQINKGSFI-SYASVSRDLQYPRAMGMGQVRRFSEDVSH 100

Query: 85  MPTIEDSKLQNAFKDLMAASWDNLPEPVVYDVKAALSGSTNDEAGKEIVEN--------- 144
           MP +EDS + NAFKDLMAA W  LP  VV D K A+S +T+D+AG+E ++N         
Sbjct: 101 MPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKNVFRAAEAVE 160

Query: 145 ----------------------DVKPLSNELKNALQTVHDRYTAYLDAFGPEENYLKKKV 204
                                  VKPL N++ +AL+T + RY  YLD+F PEE YLKKKV
Sbjct: 161 EFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYLDSFEPEEVYLKKKV 220

Query: 205 ETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 211
           E ELGTKMIHLKMRCSGLGSEWGKV+VLGTSGLSGSYVEQRA
Sbjct: 221 EMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257

The following BLAST results are available for this feature:
BLAST of Carg25834 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7020560.11.9e-112100.00Succinate dehydrogenase subunit 5, mitochondrial [Cucurbita argyrosperma subsp. ... [more]
KAG6585649.17.6e-10998.07Succinate dehydrogenase subunit 5, mitochondrial, partial [Cucurbita argyrosperm... [more]
XP_022951155.17.1e-10786.72succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita moschata][more]
XP_023001943.12.8e-10383.82succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita maxima][more]
XP_023537918.14.8e-10383.82succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita pepo subsp. pep... [more]
BLAST of Carg25834 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SX778.6e-4751.80Succinate dehydrogenase subunit 5, mitochondrial OS=Arabidopsis thaliana OX=3702... [more]
Q0JDA21.7e-3948.54Succinate dehydrogenase subunit 5, mitochondrial OS=Oryza sativa subsp. japonica... [more]
BLAST of Carg25834 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GHW53.4e-10786.72succinate dehydrogenase subunit 5, mitochondrial-like OS=Cucurbita moschata OX=3... [more]
A0A6J1KS181.4e-10383.82succinate dehydrogenase subunit 5, mitochondrial-like OS=Cucurbita maxima OX=366... [more]
A0A6J1CS251.2e-8873.03succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 OS=Momordica ch... [more]
A0A6J1C2828.0e-8873.03succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 OS=Momordica ch... [more]
A0A6J1HCU31.8e-8775.73succinate dehydrogenase subunit 5, mitochondrial-like OS=Cucurbita moschata OX=3... [more]
BLAST of Carg25834 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G47420.16.1e-4851.80succinate dehydrogenase 5 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025397Succinate dehydrogenase subunit 5, mitochondrialPFAMPF14290DUF4370coord: 1..130
e-value: 1.1E-29
score: 104.0
coord: 130..210
e-value: 1.9E-46
score: 158.9
IPR025397Succinate dehydrogenase subunit 5, mitochondrialPANTHERPTHR36139SUCCINATE DEHYDROGENASE SUBUNIT 5, MITOCHONDRIALcoord: 131..210
IPR025397Succinate dehydrogenase subunit 5, mitochondrialPANTHERPTHR36139SUCCINATE DEHYDROGENASE SUBUNIT 5, MITOCHONDRIALcoord: 1..130
NoneNo IPR availablePANTHERPTHR36139:SF1SUCCINATE DEHYDROGENASE SUBUNIT 5, MITOCHONDRIALcoord: 1..130
NoneNo IPR availablePANTHERPTHR36139:SF1SUCCINATE DEHYDROGENASE SUBUNIT 5, MITOCHONDRIALcoord: 131..210

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25834-RACarg25834-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006099 tricarboxylic acid cycle
cellular_component GO:0045273 respiratory chain complex II