Carg25790 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25790
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L12-like
Location	Carg_Chr07: 5038378 .. 5038878 (+)
RNA-Seq Expression	Carg25790
Synteny	Carg25790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCCAAGTTCGATCCTTCTCAGGTTGTCGATGTTTTTGTCCGAGTTACCGGAGGTGAGGTCGGAGCGGCCAGTTCTCTCGCTCCTAAAATCGGTCCTCTAGGTCTCTCACCAAAGAAGATCGGAGAGGACATTGCTAAGGAGACGGCTAAGGAATGGAAGGGTCTTAGGGTTACTGTTAAGCTTACTGTCCAGAACCGTCAAGCCAAGGTCTCGGTTGTTCCCTCTGCTGCTGCTTTGGTCATCAAGGCTCTCAAGGAGCCTGAGCGCGACCGCAAGAAGACTAAGAACATCAAGCACAATGGTAACATCTCGCTTGATGATGTGATTGAGATCGCTAGGGTTATGAGTCCCAGGTCTATGGCTAAAGATCTCAGTGGAACCGTCAAGGAGATCCTCGGTACTTGCGTTTCTGTTGGCTGTACGGTCGATGGTAAGGACCCGAAGGACTTACAGCAGGAAATTACTGATGGGGATGTTGAAATTCCCCAGAATTGA

mRNA sequence

ATGCCTCCCAAGTTCGATCCTTCTCAGGTTGTCGATGTTTTTGTCCGAGTTACCGGAGGTGAGGTCGGAGCGGCCAGTTCTCTCGCTCCTAAAATCGGTCCTCTAGGTCTCTCACCAAAGAAGATCGGAGAGGACATTGCTAAGGAGACGGCTAAGGAATGGAAGGGTCTTAGGGTTACTGTTAAGCTTACTGTCCAGAACCGTCAAGCCAAGGTCTCGGTTGTTCCCTCTGCTGCTGCTTTGGTCATCAAGGCTCTCAAGGAGCCTGAGCGCGACCGCAAGAAGACTAAGAACATCAAGCACAATGGTAACATCTCGCTTGATGATGTGATTGAGATCGCTAGGGTTATGAGTCCCAGGTCTATGGCTAAAGATCTCAGTGGAACCGTCAAGGAGATCCTCGGTACTTGCGTTTCTGTTGGCTGTACGGTCGATGGTAAGGACCCGAAGGACTTACAGCAGGAAATTACTGATGGGGATGTTGAAATTCCCCAGAATTGA

Coding sequence (CDS)

ATGCCTCCCAAGTTCGATCCTTCTCAGGTTGTCGATGTTTTTGTCCGAGTTACCGGAGGTGAGGTCGGAGCGGCCAGTTCTCTCGCTCCTAAAATCGGTCCTCTAGGTCTCTCACCAAAGAAGATCGGAGAGGACATTGCTAAGGAGACGGCTAAGGAATGGAAGGGTCTTAGGGTTACTGTTAAGCTTACTGTCCAGAACCGTCAAGCCAAGGTCTCGGTTGTTCCCTCTGCTGCTGCTTTGGTCATCAAGGCTCTCAAGGAGCCTGAGCGCGACCGCAAGAAGACTAAGAACATCAAGCACAATGGTAACATCTCGCTTGATGATGTGATTGAGATCGCTAGGGTTATGAGTCCCAGGTCTATGGCTAAAGATCTCAGTGGAACCGTCAAGGAGATCCTCGGTACTTGCGTTTCTGTTGGCTGTACGGTCGATGGTAAGGACCCGAAGGACTTACAGCAGGAAATTACTGATGGGGATGTTGAAATTCCCCAGAATTGA

Protein sequence

MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQN

Homology

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BLAST of Carg25790 vs. NCBI nr
Match: XP_022926062.1 (60S ribosomal protein L12-1 [Cucurbita moschata] >XP_022963090.1 60S ribosomal protein L12-1 [Cucurbita moschata] >XP_022972656.1 60S ribosomal protein L12-1 [Cucurbita maxima] >XP_022978596.1 60S ribosomal protein L12-1 [Cucurbita maxima] >XP_023518910.1 60S ribosomal protein L12-1 [Cucurbita pepo subsp. pepo] >XP_023545072.1 60S ribosomal protein L12-1 [Cucurbita pepo subsp. pepo] >KAG6595253.1 60S ribosomal protein L12-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027269.1 60S ribosomal protein L12-1, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG6604424.1 60S ribosomal protein L12-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034571.1 60S ribosomal protein L12-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 322.8 bits (826), Expect = 1.8e-84
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR 120

Query: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQN 167
           SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQN
Sbjct: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQN 166

[Close]

BLAST of Carg25790 vs. NCBI nr
Match: XP_038883892.1 (60S ribosomal protein L12-1-like [Benincasa hispida])

HSP 1 Score: 317.4 bits (812), Expect = 7.4e-83
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVM PR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQN 167
           SMAKDLSG+VKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQ+
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]

BLAST of Carg25790 vs. NCBI nr
Match: XP_022143990.1 (60S ribosomal protein L12-like [Momordica charantia])

HSP 1 Score: 317.4 bits (812), Expect = 7.4e-83
Identity = 163/166 (98.19%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVM PR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQN 167
           SMAKDL GTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQ+
Sbjct: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]

BLAST of Carg25790 vs. NCBI nr
Match: XP_022935531.1 (60S ribosomal protein L12-1-like [Cucurbita moschata] >XP_022983536.1 60S ribosomal protein L12-1-like [Cucurbita maxima] >XP_038903166.1 60S ribosomal protein L12-1 [Benincasa hispida] >KAG6580604.1 60S ribosomal protein L12-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017359.1 60S ribosomal protein L12-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 315.8 bits (808), Expect = 2.1e-82
Identity = 162/166 (97.59%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVM PR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQN 167
           SMAKDLSG+VKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQ+
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]

BLAST of Carg25790 vs. NCBI nr
Match: KAF7805590.1 (60S ribosomal protein L12 [Senna tora])

HSP 1 Score: 315.8 bits (808), Expect = 2.1e-82
Identity = 161/166 (96.99%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDP+QVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKFDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIA+VM PR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKVMKPR 120

Query: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQN 167
           SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQ+
Sbjct: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

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BLAST of Carg25790 vs. ExPASy Swiss-Prot
Match: P50883 (60S ribosomal protein L12-1 OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=2)

HSP 1 Score: 298.9 bits (764), Expect = 3.6e-80
Identity = 149/166 (89.76%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+M PR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQN 167
           S+AK+LSGTV+EILGTCVSVGCTVDGKDPKD+QQEI DG+VEIP+N
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166

[Close]

BLAST of Carg25790 vs. ExPASy Swiss-Prot
Match: Q9LFH5 (60S ribosomal protein L12-2 OS=Arabidopsis thaliana OX=3702 GN=RPL12B PE=1 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 7.9e-80
Identity = 148/166 (89.16%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+M PR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQN 167
           S+AK+LSGTV+EILGTCVSVGCTVDGKDPKDLQQEI +G++EIP+N
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166

[Close]

BLAST of Carg25790 vs. ExPASy Swiss-Prot
Match: O50003 (60S ribosomal protein L12 OS=Prunus armeniaca OX=36596 GN=RPL12 PE=2 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.8e-79
Identity = 151/164 (92.07%), Postives = 159/164 (96.95%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETA +WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKH+G+ISLDDVIEIA++M  R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHR 120

Query: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 165
           SMAK+L+GTVKEIL TCVSVGCTVDGKDPKDLQQEI DGDVEIP
Sbjct: 121 SMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEIP 164

[Close]

BLAST of Carg25790 vs. ExPASy Swiss-Prot
Match: Q9FF52 (60S ribosomal protein L12-3 OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 3.0e-79
Identity = 147/164 (89.63%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDVIEIA++M PR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 165
           S+AK+LSGTVKEILGTCVSVGCTVDGKDPKDLQ+EI  GD++IP
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIP 164

[Close]

BLAST of Carg25790 vs. ExPASy Swiss-Prot
Match: P0CT83 (60S ribosomal protein L12-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl1201 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.6e-64
Identity = 121/165 (73.33%), Postives = 145/165 (87.88%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDP++V  +F+R  GGEV   S+LAPKIGPLGLSPKK+GEDIAK T K+WKGLRVT
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKAT-KDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR 120
           VKLT+QNRQA VSVVPSA+ALVIKALKEP RDRKK KN+ H+GN+SLD++IE+AR M  +
Sbjct: 61  VKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFK 120

Query: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQ 166
           S+AK+LSGTVKEILGT  SVGCTVDGK+P D+Q+EI +G++EIPQ
Sbjct: 121 SLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQ 164

[Close]

BLAST of Carg25790 vs. ExPASy TrEMBL
Match: A0A6J1IN58 (60S ribosomal protein L12-1 OS=Cucurbita maxima OX=3661 GN=LOC111478533 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 8.5e-85
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR 120

Query: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQN 167
           SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQN
Sbjct: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQN 166

[Close]

BLAST of Carg25790 vs. ExPASy TrEMBL
Match: A0A6J1EDD6 (60S ribosomal protein L12-1 OS=Cucurbita moschata OX=3662 GN=LOC111433294 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 8.5e-85
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR 120

Query: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQN 167
           SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQN
Sbjct: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQN 166

[Close]

BLAST of Carg25790 vs. ExPASy TrEMBL
Match: A0A6J1CQD9 (60S ribosomal protein L12-like OS=Momordica charantia OX=3673 GN=LOC111013771 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.6e-83
Identity = 163/166 (98.19%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVM PR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQN 167
           SMAKDL GTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQ+
Sbjct: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]

BLAST of Carg25790 vs. ExPASy TrEMBL
Match: A0A218WB45 (60S ribosomal protein L12-1 OS=Punica granatum OX=22663 GN=LOC116196589 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.0e-82
Identity = 161/166 (96.99%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVM PR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQN 167
           SMAK+LSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP+N
Sbjct: 121 SMAKELSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPEN 166

[Close]

BLAST of Carg25790 vs. ExPASy TrEMBL
Match: A0A6J1J2K8 (60S ribosomal protein L12-1-like OS=Cucurbita maxima OX=3661 GN=LOC111482107 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.0e-82
Identity = 162/166 (97.59%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVM PR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQN 167
           SMAKDLSG+VKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQ+
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]

BLAST of Carg25790 vs. TAIR 10
Match: AT2G37190.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 298.9 bits (764), Expect = 2.5e-81
Identity = 149/166 (89.76%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+M PR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQN 167
           S+AK+LSGTV+EILGTCVSVGCTVDGKDPKD+QQEI DG+VEIP+N
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166

[Close]

BLAST of Carg25790 vs. TAIR 10
Match: AT3G53430.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 297.7 bits (761), Expect = 5.6e-81
Identity = 148/166 (89.16%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+M PR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQN 167
           S+AK+LSGTV+EILGTCVSVGCTVDGKDPKDLQQEI +G++EIP+N
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166

[Close]

BLAST of Carg25790 vs. TAIR 10
Match: AT5G60670.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 295.8 bits (756), Expect = 2.1e-80
Identity = 147/164 (89.63%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMSPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDVIEIA++M PR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 165
           S+AK+LSGTVKEILGTCVSVGCTVDGKDPKDLQ+EI  GD++IP
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIP 164

The following BLAST results are available for this feature:

BLAST of Carg25790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926062.1	1.8e-84	100.00	60S ribosomal protein L12-1 [Cucurbita moschata] >XP_022963090.1 60S ribosomal p...	[more]
XP_038883892.1	7.4e-83	98.19	60S ribosomal protein L12-1-like [Benincasa hispida]	[more]
XP_022143990.1	7.4e-83	98.19	60S ribosomal protein L12-like [Momordica charantia]	[more]
XP_022935531.1	2.1e-82	97.59	60S ribosomal protein L12-1-like [Cucurbita moschata] >XP_022983536.1 60S riboso...	[more]
KAF7805590.1	2.1e-82	96.99	60S ribosomal protein L12 [Senna tora]	[more]

BLAST of Carg25790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P50883	3.6e-80	89.76	60S ribosomal protein L12-1 OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=2	[more]
Q9LFH5	7.9e-80	89.16	60S ribosomal protein L12-2 OS=Arabidopsis thaliana OX=3702 GN=RPL12B PE=1 SV=1	[more]
O50003	1.8e-79	92.07	60S ribosomal protein L12 OS=Prunus armeniaca OX=36596 GN=RPL12 PE=2 SV=1	[more]
Q9FF52	3.0e-79	89.63	60S ribosomal protein L12-3 OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=1	[more]
P0CT83	3.6e-64	73.33	60S ribosomal protein L12-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484...	[more]

BLAST of Carg25790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IN58	8.5e-85	100.00	60S ribosomal protein L12-1 OS=Cucurbita maxima OX=3661 GN=LOC111478533 PE=3 SV=...	[more]
A0A6J1EDD6	8.5e-85	100.00	60S ribosomal protein L12-1 OS=Cucurbita moschata OX=3662 GN=LOC111433294 PE=3 S...	[more]
A0A6J1CQD9	3.6e-83	98.19	60S ribosomal protein L12-like OS=Momordica charantia OX=3673 GN=LOC111013771 PE...	[more]
A0A218WB45	1.0e-82	96.99	60S ribosomal protein L12-1 OS=Punica granatum OX=22663 GN=LOC116196589 PE=3 SV=...	[more]
A0A6J1J2K8	1.0e-82	97.59	60S ribosomal protein L12-1-like OS=Cucurbita maxima OX=3661 GN=LOC111482107 PE=...	[more]

BLAST of Carg25790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37190.1	2.5e-81	89.76	Ribosomal protein L11 family protein	[more]
AT3G53430.1	5.6e-81	89.16	Ribosomal protein L11 family protein	[more]
AT5G60670.1	2.1e-80	89.63	Ribosomal protein L11 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000911	Ribosomal protein L11/L12	SMART	SM00649	rl11c	coord: 13..145 e-value: 3.3E-57 score: 206.1
IPR000911	Ribosomal protein L11/L12	PANTHER	PTHR11661	60S RIBOSOMAL PROTEIN L12	coord: 1..166
IPR000911	Ribosomal protein L11/L12	HAMAP	MF_00736	Ribosomal_L11	coord: 9..146 score: 15.55382
IPR000911	Ribosomal protein L11/L12	CDD	cd00349	Ribosomal_L11	coord: 13..144 e-value: 3.79759E-52 score: 160.694
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily	GENE3D	3.30.1550.10		coord: 1..81 e-value: 2.2E-35 score: 122.5
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily	SUPERFAMILY	54747	Ribosomal L11/L12e N-terminal domain	coord: 1..87
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	GENE3D	1.10.10.250		coord: 82..164 e-value: 5.1E-41 score: 140.7
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	SUPERFAMILY	46906	Ribosomal protein L11, C-terminal domain	coord: 76..149
IPR020784	Ribosomal protein L11, N-terminal	PFAM	PF03946	Ribosomal_L11_N	coord: 12..70 e-value: 1.5E-19 score: 69.5
IPR020783	Ribosomal protein L11, C-terminal	PFAM	PF00298	Ribosomal_L11	coord: 75..144 e-value: 2.3E-16 score: 60.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..166
None	No IPR available	PANTHER	PTHR11661:SF27	60S RIBOSOMAL PROTEIN L12	coord: 1..166
IPR020785	Ribosomal protein L11, conserved site	PROSITE	PS00359	RIBOSOMAL_L11	coord: 131..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25790-RA	Carg25790-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070180	large ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome