Carg25676 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25676
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr04: 1459192 .. 1459576 (-)
RNA-Seq Expression	Carg25676
Synteny	Carg25676

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACACAGTATCTATAGAGAATGAGGGGAAGCAGAGGCAGGTCCTCCACAAGGGCACACCATCATATGAAGAATACAAAAGAAAAGCAGTAAAAGAGGGAAGGTGGGGGCAGACCCATATGCATTTCTTCCATGTTTACTGTTCTTGATGGTAGCAGAGCAGTAGAATTCCATCATCTTCTTCTTCTCTCTTCCTTTTTAGTGTTATAAATTTGAATTTTATAGGTTAAAAGTAAGAAGAAAAAGAACACACAGAAAGAAAGAAAGCATGTTTTTTTTTTTTCTTTTTTTTTTTTTTAGGGTTTTTTCACAGAGTACTTCAAAATGGCAGAGGTTGAAGAAGAAGATGATGATGATGGAGAGACTGTAATATTCCATTTTTAA

mRNA sequence

ATGAACACAGTATCTATAGAGAATGAGGGGAAGCAGAGGCAGGTCCTCCACAAGGGCACACCATCATATGAAGAATACAAAAGAAAAGCAGTTAAAAGTAAGAAGAAAAAGAACACACAGAAAGAAAGAAAGCATGGTTTTTTCACAGAGTACTTCAAAATGGCAGAGGTTGAAGAAGAAGATGATGATGATGGAGAGACTGTAATATTCCATTTTTAA

Coding sequence (CDS)

ATGAACACAGTATCTATAGAGAATGAGGGGAAGCAGAGGCAGGTCCTCCACAAGGGCACACCATCATATGAAGAATACAAAAGAAAAGCAGTTAAAAGTAAGAAGAAAAAGAACACACAGAAAGAAAGAAAGCATGGTTTTTTCACAGAGTACTTCAAAATGGCAGAGGTTGAAGAAGAAGATGATGATGATGGAGAGACTGTAATATTCCATTTTTAA

Protein sequence

MNTVSIENEGKQRQVLHKGTPSYEEYKRKAVKSKKKKNTQKERKHGFFTEYFKMAEVEEEDDDDGETVIFHF

Homology

[Close]

BLAST of Carg25676 vs. NCBI nr
Match: KAG7030782.1 (hypothetical protein SDJN02_04819, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.4 bits (355), Expect = 3.1e-30
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MNTVSIENEGKQRQVLHKGTPSYEEYKRKAVKSKKKKNTQKERKHGFFTEYFKMAEVEEE 60
          MNTVSIENEGKQRQVLHKGTPSYEEYKRKAVKSKKKKNTQKERKHGFFTEYFKMAEVEEE
Sbjct: 1  MNTVSIENEGKQRQVLHKGTPSYEEYKRKAVKSKKKKNTQKERKHGFFTEYFKMAEVEEE 60

Query: 61 DDDDGETVIFHF 73
          DDDDGETVIFHF
Sbjct: 61 DDDDGETVIFHF 72

[Close]

BLAST of Carg25676 vs. NCBI nr
Match: KAG6600112.1 (Zinc finger CCCH domain-containing protein 53, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.7 bits (156), Expect = 3.7e-07
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1   MNTVSIENEGKQRQVLHKGTPSYEEYKRKAVK 33
           MNTVSIENEGKQRQVLHKGTPSYEEYKRKAVK
Sbjct: 711 MNTVSIENEGKQRQVLHKGTPSYEEYKRKAVK 742

The following BLAST results are available for this feature:

BLAST of Carg25676 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030782.1	3.1e-30	100.00	hypothetical protein SDJN02_04819, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6600112.1	3.7e-07	100.00	Zinc finger CCCH domain-containing protein 53, partial [Cucurbita argyrosperma s...	[more]

BLAST of Carg25676 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25676 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25676 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 23..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25676-RA	Carg25676-RA	mRNA