Carg25663 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25663
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr06: 9691327 .. 9691724 (-)
RNA-Seq Expression	Carg25663
Synteny	Carg25663

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATATATATATACTCTTGTCTACGTGCATCATCGTTCTCGTTGGTAATGGCTTCTTGGAAGAAAACCATAACTTCTCCTATTAGAAAGGCTTGCACCATCTTCAACCAACACCCGAGAGACTCGAAGAAGTCCCACTCCGACTCCGACTCAGGTGAGCTCTCGGGTTTTCTTTTGAATTTTCAACGACGGAGCAAAAAACAAAGAAAACGGTCTTATTTTAAGTTTCTTTTGTAGAGCAAGAGAAGCGAGTAGACGTGAGAGACCTGCAAGGAGAGGTGATGGCATGTGGGTATGAAGACGTGCAAGTTATGTGGTCTATTTTAGACAAGACTAACTCTACTACTGCCGCCACCGCCGCCGCCGCCACCACCACCGTCTATAATGTGTCTTCTTAA

mRNA sequence

TATATATATATATACTCTTGTCTACGTGCATCATCGTTCTCGTTGGTAATGGCTTCTTGGAAGAAAACCATAACTTCTCCTATTAGAAAGGCTTGCACCATCTTCAACCAACACCCGAGAGACTCGAAGAAGTCCCACTCCGACTCCGACTCAGAGCAAGAGAAGCGAGTAGACGTGAGAGACCTGCAAGGAGAGGTGATGGCATGTGGGTATGAAGACGTGCAAGTTATGTGGTCTATTTTAGACAAGACTAACTCTACTACTGCCGCCACCGCCGCCGCCGCCACCACCACCGTCTATAATGTGTCTTCTTAA

Coding sequence (CDS)

ATGGCTTCTTGGAAGAAAACCATAACTTCTCCTATTAGAAAGGCTTGCACCATCTTCAACCAACACCCGAGAGACTCGAAGAAGTCCCACTCCGACTCCGACTCAGAGCAAGAGAAGCGAGTAGACGTGAGAGACCTGCAAGGAGAGGTGATGGCATGTGGGTATGAAGACGTGCAAGTTATGTGGTCTATTTTAGACAAGACTAACTCTACTACTGCCGCCACCGCCGCCGCCGCCACCACCACCGTCTATAATGTGTCTTCTTAA

Protein sequence

MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTAATAAAATTTVYNVSS

Homology

[Close]

BLAST of Carg25663 vs. NCBI nr
Match: KAG6597600.1 (hypothetical protein SDJN03_10780, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029043.1 hypothetical protein SDJN02_10226 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.4 bits (433), Expect = 3.5e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV
Sbjct: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60

Query: 61 MWSILDKTNSTTAATAAAATTTVYNVSS 89
          MWSILDKTNSTTAATAAAATTTVYNVSS
Sbjct: 61 MWSILDKTNSTTAATAAAATTTVYNVSS 88

[Close]

BLAST of Carg25663 vs. NCBI nr
Match: XP_022935724.1 (uncharacterized protein LOC111442547 [Cucurbita moschata])

HSP 1 Score: 160.6 bits (405), Expect = 6.1e-36
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV
Sbjct: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60

Query: 61 MWSILDKTNSTTAATAAAATTTVYNVSS 89
          MWSILDKTNSTT A AAA T+TVYNVSS
Sbjct: 61 MWSILDKTNSTTTA-AAATTSTVYNVSS 87

[Close]

BLAST of Carg25663 vs. NCBI nr
Match: XP_022138108.1 (uncharacterized protein LOC111009357 [Momordica charantia])

HSP 1 Score: 127.9 bits (320), Expect = 4.4e-26
Identity = 71/88 (80.68%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 1   MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
           MASWKKTI SP RKACTIFNQ PRD KKSH  SDSEQEKRVDVRDLQGEVMACGYEDV V
Sbjct: 58  MASWKKTIISPFRKACTIFNQQPRDPKKSH--SDSEQEKRVDVRDLQGEVMACGYEDVHV 117

Query: 61  MWSILDKTNSTTAATAAAATTTVYNVSS 89
           MWSILDK NS  AATAA       NVSS
Sbjct: 118 MWSILDKANSGAAATAAC------NVSS 137

[Close]

BLAST of Carg25663 vs. NCBI nr
Match: XP_022980000.1 (uncharacterized protein LOC111479526 [Cucurbita maxima] >XP_023527753.1 uncharacterized protein LOC111790878 [Cucurbita pepo subsp. pepo] >KAG6582137.1 hypothetical protein SDJN03_22139, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.8 bits (312), Expect = 3.7e-25
Identity = 69/88 (78.41%), Postives = 70/88 (79.55%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTI SP RKACTIFNQHPRD KK  S SDSEQEKRVDVR+LQGEVMACGYEDV V
Sbjct: 1  MASWKKTIISPFRKACTIFNQHPRDPKK--SPSDSEQEKRVDVRNLQGEVMACGYEDVHV 60

Query: 61 MWSILDKTNSTTAATAAAATTTVYNVSS 89
          MWSILDK NSTT A  A       NVSS
Sbjct: 61 MWSILDKANSTTTAATAC------NVSS 80

[Close]

BLAST of Carg25663 vs. NCBI nr
Match: KAG7018537.1 (putative GTP diphosphokinase CRSH, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.4 bits (311), Expect = 4.9e-25
Identity = 64/77 (83.12%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTI SP RKACTIFNQHPRD KK  S SDSEQEKRVDVR+LQGEVMACGYEDV V
Sbjct: 1  MASWKKTIISPFRKACTIFNQHPRDPKK--SPSDSEQEKRVDVRNLQGEVMACGYEDVHV 60

Query: 61 MWSILDKTNSTTAATAA 78
          MWSILDK NSTT    A
Sbjct: 61 MWSILDKANSTTTTATA 75

[Close]

BLAST of Carg25663 vs. ExPASy TrEMBL
Match: A0A6J1F683 (uncharacterized protein LOC111442547 OS=Cucurbita moschata OX=3662 GN=LOC111442547 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.0e-36
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV
Sbjct: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60

Query: 61 MWSILDKTNSTTAATAAAATTTVYNVSS 89
          MWSILDKTNSTT A AAA T+TVYNVSS
Sbjct: 61 MWSILDKTNSTTTA-AAATTSTVYNVSS 87

[Close]

BLAST of Carg25663 vs. ExPASy TrEMBL
Match: A0A6J1CC51 (uncharacterized protein LOC111009357 OS=Momordica charantia OX=3673 GN=LOC111009357 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.1e-26
Identity = 71/88 (80.68%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 1   MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
           MASWKKTI SP RKACTIFNQ PRD KKSH  SDSEQEKRVDVRDLQGEVMACGYEDV V
Sbjct: 58  MASWKKTIISPFRKACTIFNQQPRDPKKSH--SDSEQEKRVDVRDLQGEVMACGYEDVHV 117

Query: 61  MWSILDKTNSTTAATAAAATTTVYNVSS 89
           MWSILDK NS  AATAA       NVSS
Sbjct: 118 MWSILDKANSGAAATAAC------NVSS 137

[Close]

BLAST of Carg25663 vs. ExPASy TrEMBL
Match: A0A6J1IUX8 (uncharacterized protein LOC111479526 OS=Cucurbita maxima OX=3661 GN=LOC111479526 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.8e-25
Identity = 69/88 (78.41%), Postives = 70/88 (79.55%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTI SP RKACTIFNQHPRD KK  S SDSEQEKRVDVR+LQGEVMACGYEDV V
Sbjct: 1  MASWKKTIISPFRKACTIFNQHPRDPKK--SPSDSEQEKRVDVRNLQGEVMACGYEDVHV 60

Query: 61 MWSILDKTNSTTAATAAAATTTVYNVSS 89
          MWSILDK NSTT A  A       NVSS
Sbjct: 61 MWSILDKANSTTTAATAC------NVSS 80

[Close]

BLAST of Carg25663 vs. ExPASy TrEMBL
Match: A0A5A7U9W0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold60158G00010 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.8e-24
Identity = 68/84 (80.95%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTI SP RKACTIFNQ+PRD KKSH  SDSEQEKRVDVR+LQGEVMACGYEDV V
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSH--SDSEQEKRVDVRNLQGEVMACGYEDVHV 60

Query: 61 MWSILD-KTNSTTAATAAAATTTV 84
          MWSILD K NS  AAT A AT  V
Sbjct: 61 MWSILDHKANS--AATTATATCNV 80

[Close]

BLAST of Carg25663 vs. ExPASy TrEMBL
Match: A0A1S3AXS6 (uncharacterized protein LOC103483930 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483930 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.8e-24
Identity = 68/84 (80.95%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTI SP RKACTIFNQ+PRD KKSH  SDSEQEKRVDVR+LQGEVMACGYEDV V
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSH--SDSEQEKRVDVRNLQGEVMACGYEDVHV 60

Query: 61 MWSILD-KTNSTTAATAAAATTTV 84
          MWSILD K NS  AAT A AT  V
Sbjct: 61 MWSILDHKANS--AATTATATCNV 80

[Close]

BLAST of Carg25663 vs. TAIR 10
Match: AT1G48330.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17580.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-17
Identity = 42/71 (59.15%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTI +P +KA T FNQ  + ++ +++ +  E EKR  V++LQG+VMACGYEDV V
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQTNRHANAKAREEHEKRT-VQELQGDVMACGYEDVLV 60

Query: 61 MWSILDKTNST 72
          MWSILDK+NS+
Sbjct: 61 MWSILDKSNSS 70

[Close]

BLAST of Carg25663 vs. TAIR 10
Match: AT3G17580.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48330.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 82.4 bits (202), Expect = 2.0e-16
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKS-----HSDSDSEQEKRVDVRDLQGEVMACGY 60
          MASWKKTI +P +KA T FNQ  +  KK       + +  E EKR+ V++LQGEVMACGY
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQSPKKGCRGRMDAQAREEHEKRM-VQELQGEVMACGY 60

Query: 61 EDVQVMWSILDKTNST 72
          +DV VMWSILDK+NS+
Sbjct: 61 DDVLVMWSILDKSNSS 75

The following BLAST results are available for this feature:

BLAST of Carg25663 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597600.1	3.5e-39	100.00	hypothetical protein SDJN03_10780, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022935724.1	6.1e-36	95.45	uncharacterized protein LOC111442547 [Cucurbita moschata]	[more]
XP_022138108.1	4.4e-26	80.68	uncharacterized protein LOC111009357 [Momordica charantia]	[more]
XP_022980000.1	3.7e-25	78.41	uncharacterized protein LOC111479526 [Cucurbita maxima] >XP_023527753.1 uncharac...	[more]
KAG7018537.1	4.9e-25	83.12	putative GTP diphosphokinase CRSH, chloroplastic [Cucurbita argyrosperma subsp. ...	[more]

BLAST of Carg25663 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25663 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F683	3.0e-36	95.45	uncharacterized protein LOC111442547 OS=Cucurbita moschata OX=3662 GN=LOC1114425...	[more]
A0A6J1CC51	2.1e-26	80.68	uncharacterized protein LOC111009357 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1IUX8	1.8e-25	78.41	uncharacterized protein LOC111479526 OS=Cucurbita maxima OX=3661 GN=LOC111479526...	[more]
A0A5A7U9W0	5.8e-24	80.95	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AXS6	5.8e-24	80.95	uncharacterized protein LOC103483930 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Carg25663 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48330.1	1.8e-17	59.15	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G17580.1	2.0e-16	57.89	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..43
None	No IPR available	PANTHER	PTHR33181:SF43	SUBFAMILY NOT NAMED	coord: 1..73
None	No IPR available	PANTHER	PTHR33181	OS01G0778500 PROTEIN	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25663-RA	Carg25663-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane