Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCGTCTCGGCAACATTGATCAGATGAAGCTCTCCATTGCCGTCCTTGGCAATGGTGGTTTTGTCATGTGGGTCGAGAGAGCCTTTAGTTCCTTCTAAGTCTCCCTCATGGCCACCTAAACAAAAAAAAATTAAAACCCTAAATTTTCACACGTAGAATTGATAAACTTTCGTGGAATTCATCATTGCATAAAATGAAGATAATAATAGTTATAGTACGTCAAGACACTTCTTCAACGGTCTCACCAGCTCTGAAGAATTCACTAGAGGCGAGCACAAGTAAACCCTAAAGTATATATATATTATATATATATATATATAATAAAATCTAAAATAATTTAAAATTTTAAAAAATAAATCTATATTCTCCTCTAAAAAAGAGATATAAAAAGAAATAAAAGATAAGTTTAAAAATTGGAATTTTAGAAGAAAATCCGTCTAAACTTATAAAAGACGTTATTCTGAGTTCAAAATTCAAACCAAGAGGGCCAAATCGCCTTTCTTCTTCTTCTTCTTCTTCTTCAGGTCAATCTCGATTCCTCCATTTCTTTCTGAGGAGGTTTCTCTCTCTTCAACAAAGTTTCTCTTTCTCTCTCTCTTCTTCAAGGTTCAGAACCCAAAGCCTCCTGTCGTTCTGATTCTCTCTCCGGCTCCGATTCTAGGGTTTCTGTTACGGCGAATGCTGTTCCTCCTCATCCGATGCAATCCAATTCTATTTCTCACTGCCAAGAATGCGGCATCACTCAATCCGAGTGTTGGATCCTCCACAATGTCCGTGTCAAAGCGTCCTTCCGTCGTCTCTGTACCAATTGCGTCCTCAGGAACAATATCTCCCGTTTCTGTCCCGTGTGCTTCGATGTTTATGACGATTCGACTGCGCCGCCGTCTCATCAGCGAGTTATGTGCTTCAGATGTCCTTCGATCTCTCATCTCTCTTGCATTTCTTTTCGTTTTTCTTCTACCTTCCTTTGCCCTCTCTGCTCTGATCCTTCTTTTACCTTCTTCGACTGTTTCGGCTCCGGCGGCCTTGGCCTTTGCCAATCGGAGTACGCCGTCGCTACTTTGGCCGGGAGAGACATTAGTGGTAAATCGGCTAAGGCGGTTGTCGCAGCGGCTCGTGTCGCCGCACAATCCATGCGGCGAGCGGCAGCCGACGCTAGGGCTATAGCGGAGATGAAGATCAAGAATGCTGCATTTGCCAAGAAGCAGGCTACTCTCGCATTGGAGCGGCTTGCTTATCTTGAGCTAGAGGAGAAAGATGGAAATGAACATGCTAATAGTAACGGAGATGCTGTGGCCGGTGAGATGACGGTGGAAGAACAGAAGCTGCAGGACTGGATATCTTCGATTCTCGAGCCTAAGATGCGGAATCAAACTCAGTAG
mRNA sequence
ATGGAGCGTCTCGGCAACATTGATCAGATGAAGCTCTCCATTGCCGTCCTTGGCAATGGTGGTTTTGTCATGGTTTCTGTTACGGCGAATGCTGTTCCTCCTCATCCGATGCAATCCAATTCTATTTCTCACTGCCAAGAATGCGGCATCACTCAATCCGAGTGTTGGATCCTCCACAATGTCCGTGTCAAAGCGTCCTTCCGTCGTCTCTGTACCAATTGCGTCCTCAGGAACAATATCTCCCGTTTCTGTCCCGTGTGCTTCGATGTTTATGACGATTCGACTGCGCCGCCGTCTCATCAGCGAGTTATGTGCTTCAGATGTCCTTCGATCTCTCATCTCTCTTGCATTTCTTTTCGTTTTTCTTCTACCTTCCTTTGCCCTCTCTGCTCTGATCCTTCTTTTACCTTCTTCGACTGTTTCGGCTCCGGCGGCCTTGGCCTTTGCCAATCGGAGTACGCCGTCGCTACTTTGGCCGGGAGAGACATTAGTGGTAAATCGGCTAAGGCGGTTGTCGCAGCGGCTCGTGTCGCCGCACAATCCATGCGGCGAGCGGCAGCCGACGCTAGGGCTATAGCGGAGATGAAGATCAAGAATGCTGCATTTGCCAAGAAGCAGGCTACTCTCGCATTGGAGCGGCTTGCTTATCTTGAGCTAGAGGAGAAAGATGGAAATGAACATGCTAATAGTAACGGAGATGCTGTGGCCGGTGAGATGACGGTGGAAGAACAGAAGCTGCAGGACTGGATATCTTCGATTCTCGAGCCTAAGATGCGGAATCAAACTCAGTAG
Coding sequence (CDS)
ATGGAGCGTCTCGGCAACATTGATCAGATGAAGCTCTCCATTGCCGTCCTTGGCAATGGTGGTTTTGTCATGGTTTCTGTTACGGCGAATGCTGTTCCTCCTCATCCGATGCAATCCAATTCTATTTCTCACTGCCAAGAATGCGGCATCACTCAATCCGAGTGTTGGATCCTCCACAATGTCCGTGTCAAAGCGTCCTTCCGTCGTCTCTGTACCAATTGCGTCCTCAGGAACAATATCTCCCGTTTCTGTCCCGTGTGCTTCGATGTTTATGACGATTCGACTGCGCCGCCGTCTCATCAGCGAGTTATGTGCTTCAGATGTCCTTCGATCTCTCATCTCTCTTGCATTTCTTTTCGTTTTTCTTCTACCTTCCTTTGCCCTCTCTGCTCTGATCCTTCTTTTACCTTCTTCGACTGTTTCGGCTCCGGCGGCCTTGGCCTTTGCCAATCGGAGTACGCCGTCGCTACTTTGGCCGGGAGAGACATTAGTGGTAAATCGGCTAAGGCGGTTGTCGCAGCGGCTCGTGTCGCCGCACAATCCATGCGGCGAGCGGCAGCCGACGCTAGGGCTATAGCGGAGATGAAGATCAAGAATGCTGCATTTGCCAAGAAGCAGGCTACTCTCGCATTGGAGCGGCTTGCTTATCTTGAGCTAGAGGAGAAAGATGGAAATGAACATGCTAATAGTAACGGAGATGCTGTGGCCGGTGAGATGACGGTGGAAGAACAGAAGCTGCAGGACTGGATATCTTCGATTCTCGAGCCTAAGATGCGGAATCAAACTCAGTAG
Protein sequence
MERLGNIDQMKLSIAVLGNGGFVMVSVTANAVPPHPMQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLALERLAYLELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ
Homology
BLAST of Carg25656 vs. NCBI nr
Match:
KAG7029036.1 (hypothetical protein SDJN02_10219, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 517.7 bits (1332), Expect = 5.9e-143
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0
Query: 1 MERLGNIDQMKLSIAVLGNGGFVMVSVTANAVPPHPMQSNSISHCQECGITQSECWILHN 60
MERLGNIDQMKLSIAVLGNGGFVMVSVTANAVPPHPMQSNSISHCQECGITQSECWILHN
Sbjct: 1 MERLGNIDQMKLSIAVLGNGGFVMVSVTANAVPPHPMQSNSISHCQECGITQSECWILHN 60
Query: 61 VRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQRVMCFRCPSISHLSCISFR 120
VRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQRVMCFRCPSISHLSCISFR
Sbjct: 61 VRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQRVMCFRCPSISHLSCISFR 120
Query: 121 FSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATLAGRDISGKSAKAVVAAARVAAQ 180
FSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATLAGRDISGKSAKAVVAAARVAAQ
Sbjct: 121 FSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATLAGRDISGKSAKAVVAAARVAAQ 180
Query: 181 SMRRAAADARAIAEMKIKNAAFAKKQATLALERLAYLELEEKDGNEHANSNGDAVAGEMT 240
SMRRAAADARAIAEMKIKNAAFAKKQATLALERLAYLELEEKDGNEHANSNGDAVAGEMT
Sbjct: 181 SMRRAAADARAIAEMKIKNAAFAKKQATLALERLAYLELEEKDGNEHANSNGDAVAGEMT 240
Query: 241 VEEQKLQDWISSILEPKMRNQTQ 264
VEEQKLQDWISSILEPKMRNQTQ
Sbjct: 241 VEEQKLQDWISSILEPKMRNQTQ 263
BLAST of Carg25656 vs. NCBI nr
Match:
KAG6597592.1 (hypothetical protein SDJN03_10772, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 446.8 bits (1148), Expect = 1.3e-121
Identity = 226/227 (99.56%), Postives = 227/227 (100.00%), Query Frame = 0
Query: 37 MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA
Sbjct: 1 MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 60
Query: 97 PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 156
PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA
Sbjct: 61 PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 120
Query: 157 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLALERLAY 216
TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARA+AEMKIKNAAFAKKQATLALERLAY
Sbjct: 121 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAY 180
Query: 217 LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ 264
LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ
Sbjct: 181 LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ 227
BLAST of Carg25656 vs. NCBI nr
Match:
XP_022943680.1 (uncharacterized protein LOC111448356 [Cucurbita moschata])
HSP 1 Score: 444.5 bits (1142), Expect = 6.3e-121
Identity = 225/227 (99.12%), Postives = 226/227 (99.56%), Query Frame = 0
Query: 37 MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA
Sbjct: 1 MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 60
Query: 97 PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 156
PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA
Sbjct: 61 PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 120
Query: 157 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLALERLAY 216
TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARA+AEMKIKNAAFAKKQATLALERLAY
Sbjct: 121 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAY 180
Query: 217 LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ 264
LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPK RNQTQ
Sbjct: 181 LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKTRNQTQ 227
BLAST of Carg25656 vs. NCBI nr
Match:
XP_023540291.1 (uncharacterized protein LOC111800711 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 443.4 bits (1139), Expect = 1.4e-120
Identity = 224/227 (98.68%), Postives = 226/227 (99.56%), Query Frame = 0
Query: 37 MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA
Sbjct: 1 MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 60
Query: 97 PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 156
PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLG+CQSEYAVA
Sbjct: 61 PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGVCQSEYAVA 120
Query: 157 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLALERLAY 216
TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARA+AEMKIKNAAFAKKQATLALERLAY
Sbjct: 121 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAY 180
Query: 217 LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ 264
LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPK RNQTQ
Sbjct: 181 LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKTRNQTQ 227
BLAST of Carg25656 vs. NCBI nr
Match:
XP_022972158.1 (uncharacterized protein LOC111470781 [Cucurbita maxima])
HSP 1 Score: 436.8 bits (1122), Expect = 1.3e-118
Identity = 220/227 (96.92%), Postives = 224/227 (98.68%), Query Frame = 0
Query: 37 MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNC+LRNNISRFCPVCFDVYDDSTA
Sbjct: 1 MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCILRNNISRFCPVCFDVYDDSTA 60
Query: 97 PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 156
PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA
Sbjct: 61 PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 120
Query: 157 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLALERLAY 216
TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARA+AEMKIKNAAFAKKQATLALERLAY
Sbjct: 121 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAY 180
Query: 217 LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ 264
LELEEKDGNE+ NSNGDAVAGEMTVEE KLQ+WISSILEPK RNQTQ
Sbjct: 181 LELEEKDGNEYGNSNGDAVAGEMTVEEHKLQEWISSILEPKTRNQTQ 227
BLAST of Carg25656 vs. ExPASy TrEMBL
Match:
A0A6J1FY52 (uncharacterized protein LOC111448356 OS=Cucurbita moschata OX=3662 GN=LOC111448356 PE=4 SV=1)
HSP 1 Score: 444.5 bits (1142), Expect = 3.1e-121
Identity = 225/227 (99.12%), Postives = 226/227 (99.56%), Query Frame = 0
Query: 37 MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA
Sbjct: 1 MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 60
Query: 97 PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 156
PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA
Sbjct: 61 PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 120
Query: 157 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLALERLAY 216
TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARA+AEMKIKNAAFAKKQATLALERLAY
Sbjct: 121 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAY 180
Query: 217 LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ 264
LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPK RNQTQ
Sbjct: 181 LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKTRNQTQ 227
BLAST of Carg25656 vs. ExPASy TrEMBL
Match:
A0A6J1I928 (uncharacterized protein LOC111470781 OS=Cucurbita maxima OX=3661 GN=LOC111470781 PE=4 SV=1)
HSP 1 Score: 436.8 bits (1122), Expect = 6.4e-119
Identity = 220/227 (96.92%), Postives = 224/227 (98.68%), Query Frame = 0
Query: 37 MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNC+LRNNISRFCPVCFDVYDDSTA
Sbjct: 1 MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCILRNNISRFCPVCFDVYDDSTA 60
Query: 97 PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 156
PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA
Sbjct: 61 PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 120
Query: 157 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLALERLAY 216
TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARA+AEMKIKNAAFAKKQATLALERLAY
Sbjct: 121 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAY 180
Query: 217 LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ 264
LELEEKDGNE+ NSNGDAVAGEMTVEE KLQ+WISSILEPK RNQTQ
Sbjct: 181 LELEEKDGNEYGNSNGDAVAGEMTVEEHKLQEWISSILEPKTRNQTQ 227
BLAST of Carg25656 vs. ExPASy TrEMBL
Match:
A0A0A0L5G4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171130 PE=4 SV=1)
HSP 1 Score: 328.6 bits (841), Expect = 2.5e-86
Identity = 178/255 (69.80%), Postives = 205/255 (80.39%), Query Frame = 0
Query: 3 RLGNIDQMKLSIAVLGNGGFVMVSVTANA-VPP------HPMQSNSISHCQECGITQSEC 62
++ NID + I + VSV ANA VPP + +QSNSISHCQ+CGI+QS C
Sbjct: 33 KIMNIDPHRAFIGFSLSVSHSRVSVPANATVPPMNRQHSNHLQSNSISHCQQCGISQSAC 92
Query: 63 WILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQRVMCFRCPSISHLS 122
WILHNVR KA+FRRLCTNCVL++N+SRFCP+CFDVY+DST PPSH RVMCFRCPSISHLS
Sbjct: 93 WILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYEDSTPPPSHHRVMCFRCPSISHLS 152
Query: 123 CISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATLAGRDISGKSAKAVVAAA 182
C+SFRFSSTFLCPLCSDP F FFD F SGG LCQSE VA LAG+++ KS KA+VAAA
Sbjct: 153 CVSFRFSSTFLCPLCSDPRFVFFDGFDSGG-SLCQSESTVAFLAGKNVDAKSGKAIVAAA 212
Query: 183 RVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLALERLAYLELEEKDGNEHANSNGDAV 242
RV+AQSMRRAA DARA+AEMKIKNAAFAKKQATLALE+LAYL L+EKD N ++ SNGDAV
Sbjct: 213 RVSAQSMRRAALDARAVAEMKIKNAAFAKKQATLALEQLAYLVLQEKDKNGYSKSNGDAV 272
Query: 243 AGEMTVEEQ--KLQD 249
E VEE+ KLQ+
Sbjct: 273 DSERKVEEEEYKLQE 286
BLAST of Carg25656 vs. ExPASy TrEMBL
Match:
A0A6J1GVZ7 (uncharacterized protein LOC111457661 OS=Cucurbita moschata OX=3662 GN=LOC111457661 PE=4 SV=1)
HSP 1 Score: 322.0 bits (824), Expect = 2.3e-84
Identity = 179/256 (69.92%), Postives = 205/256 (80.08%), Query Frame = 0
Query: 16 VLGNGGFVMVSVTANAVPP------HPMQSNSISHCQECGITQSECWILHNVRVKASFRR 75
V G+ V V A AVPP + +QSNSIS+C ECGI+QS CWILHNVR KASFRR
Sbjct: 36 VAGSDSRVSVPANAAAVPPMNRPHYNHLQSNSISNCHECGISQSVCWILHNVRFKASFRR 95
Query: 76 LCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQRVMCFRCPSISHLSCISFRFSSTFLCPL 135
LCTNCVL+NN+SRFCP+CFD+YDDST P SHQRVMCFRCPSISH+SC SFRFSSTFLCP+
Sbjct: 96 LCTNCVLKNNLSRFCPLCFDIYDDSTPPSSHQRVMCFRCPSISHVSCASFRFSSTFLCPV 155
Query: 136 CSDPSFTFFDCFGSGGLGLCQSEYAVATLAGRDISGKSAKAVVAAARVAAQSMRRAAADA 195
CSDP F FFD F S GL QSE AVA LAGRD GKSAKA+VAAARVAAQSMRRAAADA
Sbjct: 156 CSDPCFAFFDGFDSDGLR--QSEPAVAVLAGRD--GKSAKAIVAAARVAAQSMRRAAADA 215
Query: 196 RAIAEMKIKNAAFAKKQATLALERLAYLELEEKDGNEHANSNGDAVAGEMTVEEQ-KLQ- 255
RA+AEMKI+NA FAKKQATLALERLA+L L+EKD N +A +NG+A AG + EE+ +LQ
Sbjct: 216 RAVAEMKIRNAVFAKKQATLALERLAFLVLQEKDRNGYAKTNGNAAAGAVEEEEETELQG 275
Query: 256 DWISSILEPKMRNQTQ 264
+ +++ILE N TQ
Sbjct: 276 EVVTAILERMKANHTQ 287
BLAST of Carg25656 vs. ExPASy TrEMBL
Match:
A0A6J1IXP5 (uncharacterized protein LOC111479468 OS=Cucurbita maxima OX=3661 GN=LOC111479468 PE=4 SV=1)
HSP 1 Score: 317.4 bits (812), Expect = 5.7e-83
Identity = 170/229 (74.24%), Postives = 193/229 (84.28%), Query Frame = 0
Query: 37 MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
+QSNSIS+C ECGI+QS CWILHNVR KASFRRLCTNCVL+NN+SRFCP+CFD+YDDST
Sbjct: 9 LQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCFDIYDDSTP 68
Query: 97 PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 156
P SHQRVMCFRCPSISH+SC SFRFSSTFLCPLCSDP F FFD F SG L QSE AV+
Sbjct: 69 PSSHQRVMCFRCPSISHISCTSFRFSSTFLCPLCSDPCFAFFDGFDSGSLR--QSELAVS 128
Query: 157 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLALERLAY 216
LAGRD GKSAKA+VAAARV AQSMRRAAADARA+AEMK +NA FAKKQATLALERLAY
Sbjct: 129 VLAGRD--GKSAKAIVAAARVVAQSMRRAAADARAVAEMKFRNAVFAKKQATLALERLAY 188
Query: 217 LELEEKDGNEHANSNGDAVAGEMTVEEQ-KLQ-DWISSILEPKMRNQTQ 264
L L+EKD N +A +NG+A AG + EE+ +LQ + +++ILE NQTQ
Sbjct: 189 LVLQEKDRNGYAKTNGNAAAGAVEEEEETELQGEVVTAILERMKANQTQ 233
BLAST of Carg25656 vs. TAIR 10
Match:
AT1G09520.1 (LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )
HSP 1 Score: 112.1 bits (279), Expect = 6.9e-25
Identity = 71/187 (37.97%), Postives = 105/187 (56.15%), Query Frame = 0
Query: 39 SNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPP 98
+NS C +CG S+ W++H VR++AS R CT+C+LRN+ + FCP CF +YD S PP
Sbjct: 20 ANSTERCDDCG--SSDAWVIHTVRLRASLRFFCTHCLLRNHPASFCPGCFALYDSS--PP 79
Query: 99 SHQRVMCF--RCPSISHLSCISFRFSSTFLCPLCSDP-SFTFFDCFGSGGLGLCQSEYAV 158
S +RV C C S++H+ C ++LCP C DP SF+FF V
Sbjct: 80 SFRRVSCSIKGCHSLTHIHCAGDESHLSYLCPPCRDPNSFSFF-------------RPIV 139
Query: 159 ATLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLALERLA 218
R + ++A + AA++AA SM +A A+ + + K AA AKK+A ALE++
Sbjct: 140 DENGSRFVDKALSEAFLCAAKIAASSMNKAVMTAKCETDRRGKEAALAKKRAREALEQVV 189
Query: 219 YLELEEK 223
L+ +EK
Sbjct: 200 MLDAKEK 189
BLAST of Carg25656 vs. TAIR 10
Match:
AT3G17460.1 (PHD finger family protein )
HSP 1 Score: 76.3 bits (186), Expect = 4.2e-14
Identity = 62/184 (33.70%), Postives = 91/184 (49.46%), Query Frame = 0
Query: 46 QECGI-TQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQRVM 105
+EC + + E +H V +FRRLCT+C+L+ FC VCF+++D+ A P R++
Sbjct: 8 RECIVCREKEPSFIHTVIKTGAFRRLCTDCLLKEYREHFCSVCFNLFDN--AVPPQARII 67
Query: 106 CFRCPSISHLSCISFRFS--------------STFLCPLCSDPSFTFFDCFGSGGLGLCQ 165
C CPS +HLSC + S S+F C CS+P+FTFF +
Sbjct: 68 CVNCPSSTHLSCSTQPPSSSAASSSSSAPPPASSFTCQPCSNPNFTFFP----------K 127
Query: 166 SEYAVATLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLA 215
S ++ KSA A+VAA ++ +M +A A + A KI A AK +A A
Sbjct: 128 SRVNEDVPDETPLTPKSAMALVAAGNISVANMNKAVALLKEEALKKIIAAKTAKLRAKGA 179
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7029036.1 | 5.9e-143 | 100.00 | hypothetical protein SDJN02_10219, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6597592.1 | 1.3e-121 | 99.56 | hypothetical protein SDJN03_10772, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022943680.1 | 6.3e-121 | 99.12 | uncharacterized protein LOC111448356 [Cucurbita moschata] | [more] |
XP_023540291.1 | 1.4e-120 | 98.68 | uncharacterized protein LOC111800711 [Cucurbita pepo subsp. pepo] | [more] |
XP_022972158.1 | 1.3e-118 | 96.92 | uncharacterized protein LOC111470781 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1FY52 | 3.1e-121 | 99.12 | uncharacterized protein LOC111448356 OS=Cucurbita moschata OX=3662 GN=LOC1114483... | [more] |
A0A6J1I928 | 6.4e-119 | 96.92 | uncharacterized protein LOC111470781 OS=Cucurbita maxima OX=3661 GN=LOC111470781... | [more] |
A0A0A0L5G4 | 2.5e-86 | 69.80 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171130 PE=4 SV=1 | [more] |
A0A6J1GVZ7 | 2.3e-84 | 69.92 | uncharacterized protein LOC111457661 OS=Cucurbita moschata OX=3662 GN=LOC1114576... | [more] |
A0A6J1IXP5 | 5.7e-83 | 74.24 | uncharacterized protein LOC111479468 OS=Cucurbita maxima OX=3661 GN=LOC111479468... | [more] |
Match Name | E-value | Identity | Description | |
AT1G09520.1 | 6.9e-25 | 37.97 | LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12... | [more] |
AT3G17460.1 | 4.2e-14 | 33.70 | PHD finger family protein | [more] |