Carg25656 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25656
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-type domain-containing protein
LocationCarg_Chr06: 9657704 .. 9659089 (-)
RNA-Seq ExpressionCarg25656
SyntenyCarg25656
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCGTCTCGGCAACATTGATCAGATGAAGCTCTCCATTGCCGTCCTTGGCAATGGTGGTTTTGTCATGTGGGTCGAGAGAGCCTTTAGTTCCTTCTAAGTCTCCCTCATGGCCACCTAAACAAAAAAAAATTAAAACCCTAAATTTTCACACGTAGAATTGATAAACTTTCGTGGAATTCATCATTGCATAAAATGAAGATAATAATAGTTATAGTACGTCAAGACACTTCTTCAACGGTCTCACCAGCTCTGAAGAATTCACTAGAGGCGAGCACAAGTAAACCCTAAAGTATATATATATTATATATATATATATATAATAAAATCTAAAATAATTTAAAATTTTAAAAAATAAATCTATATTCTCCTCTAAAAAAGAGATATAAAAAGAAATAAAAGATAAGTTTAAAAATTGGAATTTTAGAAGAAAATCCGTCTAAACTTATAAAAGACGTTATTCTGAGTTCAAAATTCAAACCAAGAGGGCCAAATCGCCTTTCTTCTTCTTCTTCTTCTTCTTCAGGTCAATCTCGATTCCTCCATTTCTTTCTGAGGAGGTTTCTCTCTCTTCAACAAAGTTTCTCTTTCTCTCTCTCTTCTTCAAGGTTCAGAACCCAAAGCCTCCTGTCGTTCTGATTCTCTCTCCGGCTCCGATTCTAGGGTTTCTGTTACGGCGAATGCTGTTCCTCCTCATCCGATGCAATCCAATTCTATTTCTCACTGCCAAGAATGCGGCATCACTCAATCCGAGTGTTGGATCCTCCACAATGTCCGTGTCAAAGCGTCCTTCCGTCGTCTCTGTACCAATTGCGTCCTCAGGAACAATATCTCCCGTTTCTGTCCCGTGTGCTTCGATGTTTATGACGATTCGACTGCGCCGCCGTCTCATCAGCGAGTTATGTGCTTCAGATGTCCTTCGATCTCTCATCTCTCTTGCATTTCTTTTCGTTTTTCTTCTACCTTCCTTTGCCCTCTCTGCTCTGATCCTTCTTTTACCTTCTTCGACTGTTTCGGCTCCGGCGGCCTTGGCCTTTGCCAATCGGAGTACGCCGTCGCTACTTTGGCCGGGAGAGACATTAGTGGTAAATCGGCTAAGGCGGTTGTCGCAGCGGCTCGTGTCGCCGCACAATCCATGCGGCGAGCGGCAGCCGACGCTAGGGCTATAGCGGAGATGAAGATCAAGAATGCTGCATTTGCCAAGAAGCAGGCTACTCTCGCATTGGAGCGGCTTGCTTATCTTGAGCTAGAGGAGAAAGATGGAAATGAACATGCTAATAGTAACGGAGATGCTGTGGCCGGTGAGATGACGGTGGAAGAACAGAAGCTGCAGGACTGGATATCTTCGATTCTCGAGCCTAAGATGCGGAATCAAACTCAGTAG

mRNA sequence

ATGGAGCGTCTCGGCAACATTGATCAGATGAAGCTCTCCATTGCCGTCCTTGGCAATGGTGGTTTTGTCATGGTTTCTGTTACGGCGAATGCTGTTCCTCCTCATCCGATGCAATCCAATTCTATTTCTCACTGCCAAGAATGCGGCATCACTCAATCCGAGTGTTGGATCCTCCACAATGTCCGTGTCAAAGCGTCCTTCCGTCGTCTCTGTACCAATTGCGTCCTCAGGAACAATATCTCCCGTTTCTGTCCCGTGTGCTTCGATGTTTATGACGATTCGACTGCGCCGCCGTCTCATCAGCGAGTTATGTGCTTCAGATGTCCTTCGATCTCTCATCTCTCTTGCATTTCTTTTCGTTTTTCTTCTACCTTCCTTTGCCCTCTCTGCTCTGATCCTTCTTTTACCTTCTTCGACTGTTTCGGCTCCGGCGGCCTTGGCCTTTGCCAATCGGAGTACGCCGTCGCTACTTTGGCCGGGAGAGACATTAGTGGTAAATCGGCTAAGGCGGTTGTCGCAGCGGCTCGTGTCGCCGCACAATCCATGCGGCGAGCGGCAGCCGACGCTAGGGCTATAGCGGAGATGAAGATCAAGAATGCTGCATTTGCCAAGAAGCAGGCTACTCTCGCATTGGAGCGGCTTGCTTATCTTGAGCTAGAGGAGAAAGATGGAAATGAACATGCTAATAGTAACGGAGATGCTGTGGCCGGTGAGATGACGGTGGAAGAACAGAAGCTGCAGGACTGGATATCTTCGATTCTCGAGCCTAAGATGCGGAATCAAACTCAGTAG

Coding sequence (CDS)

ATGGAGCGTCTCGGCAACATTGATCAGATGAAGCTCTCCATTGCCGTCCTTGGCAATGGTGGTTTTGTCATGGTTTCTGTTACGGCGAATGCTGTTCCTCCTCATCCGATGCAATCCAATTCTATTTCTCACTGCCAAGAATGCGGCATCACTCAATCCGAGTGTTGGATCCTCCACAATGTCCGTGTCAAAGCGTCCTTCCGTCGTCTCTGTACCAATTGCGTCCTCAGGAACAATATCTCCCGTTTCTGTCCCGTGTGCTTCGATGTTTATGACGATTCGACTGCGCCGCCGTCTCATCAGCGAGTTATGTGCTTCAGATGTCCTTCGATCTCTCATCTCTCTTGCATTTCTTTTCGTTTTTCTTCTACCTTCCTTTGCCCTCTCTGCTCTGATCCTTCTTTTACCTTCTTCGACTGTTTCGGCTCCGGCGGCCTTGGCCTTTGCCAATCGGAGTACGCCGTCGCTACTTTGGCCGGGAGAGACATTAGTGGTAAATCGGCTAAGGCGGTTGTCGCAGCGGCTCGTGTCGCCGCACAATCCATGCGGCGAGCGGCAGCCGACGCTAGGGCTATAGCGGAGATGAAGATCAAGAATGCTGCATTTGCCAAGAAGCAGGCTACTCTCGCATTGGAGCGGCTTGCTTATCTTGAGCTAGAGGAGAAAGATGGAAATGAACATGCTAATAGTAACGGAGATGCTGTGGCCGGTGAGATGACGGTGGAAGAACAGAAGCTGCAGGACTGGATATCTTCGATTCTCGAGCCTAAGATGCGGAATCAAACTCAGTAG

Protein sequence

MERLGNIDQMKLSIAVLGNGGFVMVSVTANAVPPHPMQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLALERLAYLELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ
Homology
BLAST of Carg25656 vs. NCBI nr
Match: KAG7029036.1 (hypothetical protein SDJN02_10219, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 517.7 bits (1332), Expect = 5.9e-143
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0

Query: 1   MERLGNIDQMKLSIAVLGNGGFVMVSVTANAVPPHPMQSNSISHCQECGITQSECWILHN 60
           MERLGNIDQMKLSIAVLGNGGFVMVSVTANAVPPHPMQSNSISHCQECGITQSECWILHN
Sbjct: 1   MERLGNIDQMKLSIAVLGNGGFVMVSVTANAVPPHPMQSNSISHCQECGITQSECWILHN 60

Query: 61  VRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQRVMCFRCPSISHLSCISFR 120
           VRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQRVMCFRCPSISHLSCISFR
Sbjct: 61  VRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQRVMCFRCPSISHLSCISFR 120

Query: 121 FSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATLAGRDISGKSAKAVVAAARVAAQ 180
           FSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATLAGRDISGKSAKAVVAAARVAAQ
Sbjct: 121 FSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATLAGRDISGKSAKAVVAAARVAAQ 180

Query: 181 SMRRAAADARAIAEMKIKNAAFAKKQATLALERLAYLELEEKDGNEHANSNGDAVAGEMT 240
           SMRRAAADARAIAEMKIKNAAFAKKQATLALERLAYLELEEKDGNEHANSNGDAVAGEMT
Sbjct: 181 SMRRAAADARAIAEMKIKNAAFAKKQATLALERLAYLELEEKDGNEHANSNGDAVAGEMT 240

Query: 241 VEEQKLQDWISSILEPKMRNQTQ 264
           VEEQKLQDWISSILEPKMRNQTQ
Sbjct: 241 VEEQKLQDWISSILEPKMRNQTQ 263

BLAST of Carg25656 vs. NCBI nr
Match: KAG6597592.1 (hypothetical protein SDJN03_10772, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 446.8 bits (1148), Expect = 1.3e-121
Identity = 226/227 (99.56%), Postives = 227/227 (100.00%), Query Frame = 0

Query: 37  MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
           MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA
Sbjct: 1   MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 60

Query: 97  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 156
           PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA
Sbjct: 61  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 120

Query: 157 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLALERLAY 216
           TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARA+AEMKIKNAAFAKKQATLALERLAY
Sbjct: 121 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAY 180

Query: 217 LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ 264
           LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ
Sbjct: 181 LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ 227

BLAST of Carg25656 vs. NCBI nr
Match: XP_022943680.1 (uncharacterized protein LOC111448356 [Cucurbita moschata])

HSP 1 Score: 444.5 bits (1142), Expect = 6.3e-121
Identity = 225/227 (99.12%), Postives = 226/227 (99.56%), Query Frame = 0

Query: 37  MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
           MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA
Sbjct: 1   MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 60

Query: 97  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 156
           PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA
Sbjct: 61  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 120

Query: 157 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLALERLAY 216
           TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARA+AEMKIKNAAFAKKQATLALERLAY
Sbjct: 121 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAY 180

Query: 217 LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ 264
           LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPK RNQTQ
Sbjct: 181 LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKTRNQTQ 227

BLAST of Carg25656 vs. NCBI nr
Match: XP_023540291.1 (uncharacterized protein LOC111800711 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 443.4 bits (1139), Expect = 1.4e-120
Identity = 224/227 (98.68%), Postives = 226/227 (99.56%), Query Frame = 0

Query: 37  MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
           MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA
Sbjct: 1   MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 60

Query: 97  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 156
           PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLG+CQSEYAVA
Sbjct: 61  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGVCQSEYAVA 120

Query: 157 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLALERLAY 216
           TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARA+AEMKIKNAAFAKKQATLALERLAY
Sbjct: 121 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAY 180

Query: 217 LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ 264
           LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPK RNQTQ
Sbjct: 181 LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKTRNQTQ 227

BLAST of Carg25656 vs. NCBI nr
Match: XP_022972158.1 (uncharacterized protein LOC111470781 [Cucurbita maxima])

HSP 1 Score: 436.8 bits (1122), Expect = 1.3e-118
Identity = 220/227 (96.92%), Postives = 224/227 (98.68%), Query Frame = 0

Query: 37  MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
           MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNC+LRNNISRFCPVCFDVYDDSTA
Sbjct: 1   MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCILRNNISRFCPVCFDVYDDSTA 60

Query: 97  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 156
           PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA
Sbjct: 61  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 120

Query: 157 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLALERLAY 216
           TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARA+AEMKIKNAAFAKKQATLALERLAY
Sbjct: 121 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAY 180

Query: 217 LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ 264
           LELEEKDGNE+ NSNGDAVAGEMTVEE KLQ+WISSILEPK RNQTQ
Sbjct: 181 LELEEKDGNEYGNSNGDAVAGEMTVEEHKLQEWISSILEPKTRNQTQ 227

BLAST of Carg25656 vs. ExPASy TrEMBL
Match: A0A6J1FY52 (uncharacterized protein LOC111448356 OS=Cucurbita moschata OX=3662 GN=LOC111448356 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 3.1e-121
Identity = 225/227 (99.12%), Postives = 226/227 (99.56%), Query Frame = 0

Query: 37  MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
           MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA
Sbjct: 1   MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 60

Query: 97  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 156
           PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA
Sbjct: 61  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 120

Query: 157 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLALERLAY 216
           TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARA+AEMKIKNAAFAKKQATLALERLAY
Sbjct: 121 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAY 180

Query: 217 LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ 264
           LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPK RNQTQ
Sbjct: 181 LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKTRNQTQ 227

BLAST of Carg25656 vs. ExPASy TrEMBL
Match: A0A6J1I928 (uncharacterized protein LOC111470781 OS=Cucurbita maxima OX=3661 GN=LOC111470781 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 6.4e-119
Identity = 220/227 (96.92%), Postives = 224/227 (98.68%), Query Frame = 0

Query: 37  MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
           MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNC+LRNNISRFCPVCFDVYDDSTA
Sbjct: 1   MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCILRNNISRFCPVCFDVYDDSTA 60

Query: 97  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 156
           PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA
Sbjct: 61  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 120

Query: 157 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLALERLAY 216
           TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARA+AEMKIKNAAFAKKQATLALERLAY
Sbjct: 121 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAY 180

Query: 217 LELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ 264
           LELEEKDGNE+ NSNGDAVAGEMTVEE KLQ+WISSILEPK RNQTQ
Sbjct: 181 LELEEKDGNEYGNSNGDAVAGEMTVEEHKLQEWISSILEPKTRNQTQ 227

BLAST of Carg25656 vs. ExPASy TrEMBL
Match: A0A0A0L5G4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171130 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 2.5e-86
Identity = 178/255 (69.80%), Postives = 205/255 (80.39%), Query Frame = 0

Query: 3   RLGNIDQMKLSIAVLGNGGFVMVSVTANA-VPP------HPMQSNSISHCQECGITQSEC 62
           ++ NID  +  I    +     VSV ANA VPP      + +QSNSISHCQ+CGI+QS C
Sbjct: 33  KIMNIDPHRAFIGFSLSVSHSRVSVPANATVPPMNRQHSNHLQSNSISHCQQCGISQSAC 92

Query: 63  WILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQRVMCFRCPSISHLS 122
           WILHNVR KA+FRRLCTNCVL++N+SRFCP+CFDVY+DST PPSH RVMCFRCPSISHLS
Sbjct: 93  WILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYEDSTPPPSHHRVMCFRCPSISHLS 152

Query: 123 CISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATLAGRDISGKSAKAVVAAA 182
           C+SFRFSSTFLCPLCSDP F FFD F SGG  LCQSE  VA LAG+++  KS KA+VAAA
Sbjct: 153 CVSFRFSSTFLCPLCSDPRFVFFDGFDSGG-SLCQSESTVAFLAGKNVDAKSGKAIVAAA 212

Query: 183 RVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLALERLAYLELEEKDGNEHANSNGDAV 242
           RV+AQSMRRAA DARA+AEMKIKNAAFAKKQATLALE+LAYL L+EKD N ++ SNGDAV
Sbjct: 213 RVSAQSMRRAALDARAVAEMKIKNAAFAKKQATLALEQLAYLVLQEKDKNGYSKSNGDAV 272

Query: 243 AGEMTVEEQ--KLQD 249
             E  VEE+  KLQ+
Sbjct: 273 DSERKVEEEEYKLQE 286

BLAST of Carg25656 vs. ExPASy TrEMBL
Match: A0A6J1GVZ7 (uncharacterized protein LOC111457661 OS=Cucurbita moschata OX=3662 GN=LOC111457661 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 2.3e-84
Identity = 179/256 (69.92%), Postives = 205/256 (80.08%), Query Frame = 0

Query: 16  VLGNGGFVMVSVTANAVPP------HPMQSNSISHCQECGITQSECWILHNVRVKASFRR 75
           V G+   V V   A AVPP      + +QSNSIS+C ECGI+QS CWILHNVR KASFRR
Sbjct: 36  VAGSDSRVSVPANAAAVPPMNRPHYNHLQSNSISNCHECGISQSVCWILHNVRFKASFRR 95

Query: 76  LCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQRVMCFRCPSISHLSCISFRFSSTFLCPL 135
           LCTNCVL+NN+SRFCP+CFD+YDDST P SHQRVMCFRCPSISH+SC SFRFSSTFLCP+
Sbjct: 96  LCTNCVLKNNLSRFCPLCFDIYDDSTPPSSHQRVMCFRCPSISHVSCASFRFSSTFLCPV 155

Query: 136 CSDPSFTFFDCFGSGGLGLCQSEYAVATLAGRDISGKSAKAVVAAARVAAQSMRRAAADA 195
           CSDP F FFD F S GL   QSE AVA LAGRD  GKSAKA+VAAARVAAQSMRRAAADA
Sbjct: 156 CSDPCFAFFDGFDSDGLR--QSEPAVAVLAGRD--GKSAKAIVAAARVAAQSMRRAAADA 215

Query: 196 RAIAEMKIKNAAFAKKQATLALERLAYLELEEKDGNEHANSNGDAVAGEMTVEEQ-KLQ- 255
           RA+AEMKI+NA FAKKQATLALERLA+L L+EKD N +A +NG+A AG +  EE+ +LQ 
Sbjct: 216 RAVAEMKIRNAVFAKKQATLALERLAFLVLQEKDRNGYAKTNGNAAAGAVEEEEETELQG 275

Query: 256 DWISSILEPKMRNQTQ 264
           + +++ILE    N TQ
Sbjct: 276 EVVTAILERMKANHTQ 287

BLAST of Carg25656 vs. ExPASy TrEMBL
Match: A0A6J1IXP5 (uncharacterized protein LOC111479468 OS=Cucurbita maxima OX=3661 GN=LOC111479468 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 5.7e-83
Identity = 170/229 (74.24%), Postives = 193/229 (84.28%), Query Frame = 0

Query: 37  MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
           +QSNSIS+C ECGI+QS CWILHNVR KASFRRLCTNCVL+NN+SRFCP+CFD+YDDST 
Sbjct: 9   LQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCFDIYDDSTP 68

Query: 97  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 156
           P SHQRVMCFRCPSISH+SC SFRFSSTFLCPLCSDP F FFD F SG L   QSE AV+
Sbjct: 69  PSSHQRVMCFRCPSISHISCTSFRFSSTFLCPLCSDPCFAFFDGFDSGSLR--QSELAVS 128

Query: 157 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLALERLAY 216
            LAGRD  GKSAKA+VAAARV AQSMRRAAADARA+AEMK +NA FAKKQATLALERLAY
Sbjct: 129 VLAGRD--GKSAKAIVAAARVVAQSMRRAAADARAVAEMKFRNAVFAKKQATLALERLAY 188

Query: 217 LELEEKDGNEHANSNGDAVAGEMTVEEQ-KLQ-DWISSILEPKMRNQTQ 264
           L L+EKD N +A +NG+A AG +  EE+ +LQ + +++ILE    NQTQ
Sbjct: 189 LVLQEKDRNGYAKTNGNAAAGAVEEEEETELQGEVVTAILERMKANQTQ 233

BLAST of Carg25656 vs. TAIR 10
Match: AT1G09520.1 (LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 112.1 bits (279), Expect = 6.9e-25
Identity = 71/187 (37.97%), Postives = 105/187 (56.15%), Query Frame = 0

Query: 39  SNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPP 98
           +NS   C +CG   S+ W++H VR++AS R  CT+C+LRN+ + FCP CF +YD S  PP
Sbjct: 20  ANSTERCDDCG--SSDAWVIHTVRLRASLRFFCTHCLLRNHPASFCPGCFALYDSS--PP 79

Query: 99  SHQRVMCF--RCPSISHLSCISFRFSSTFLCPLCSDP-SFTFFDCFGSGGLGLCQSEYAV 158
           S +RV C    C S++H+ C       ++LCP C DP SF+FF                V
Sbjct: 80  SFRRVSCSIKGCHSLTHIHCAGDESHLSYLCPPCRDPNSFSFF-------------RPIV 139

Query: 159 ATLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLALERLA 218
                R +    ++A + AA++AA SM +A   A+   + + K AA AKK+A  ALE++ 
Sbjct: 140 DENGSRFVDKALSEAFLCAAKIAASSMNKAVMTAKCETDRRGKEAALAKKRAREALEQVV 189

Query: 219 YLELEEK 223
            L+ +EK
Sbjct: 200 MLDAKEK 189

BLAST of Carg25656 vs. TAIR 10
Match: AT3G17460.1 (PHD finger family protein )

HSP 1 Score: 76.3 bits (186), Expect = 4.2e-14
Identity = 62/184 (33.70%), Postives = 91/184 (49.46%), Query Frame = 0

Query: 46  QECGI-TQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQRVM 105
           +EC +  + E   +H V    +FRRLCT+C+L+     FC VCF+++D+  A P   R++
Sbjct: 8   RECIVCREKEPSFIHTVIKTGAFRRLCTDCLLKEYREHFCSVCFNLFDN--AVPPQARII 67

Query: 106 CFRCPSISHLSCISFRFS--------------STFLCPLCSDPSFTFFDCFGSGGLGLCQ 165
           C  CPS +HLSC +   S              S+F C  CS+P+FTFF           +
Sbjct: 68  CVNCPSSTHLSCSTQPPSSSAASSSSSAPPPASSFTCQPCSNPNFTFFP----------K 127

Query: 166 SEYAVATLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLA 215
           S           ++ KSA A+VAA  ++  +M +A A  +  A  KI  A  AK +A  A
Sbjct: 128 SRVNEDVPDETPLTPKSAMALVAAGNISVANMNKAVALLKEEALKKIIAAKTAKLRAKGA 179

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7029036.15.9e-143100.00hypothetical protein SDJN02_10219, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6597592.11.3e-12199.56hypothetical protein SDJN03_10772, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022943680.16.3e-12199.12uncharacterized protein LOC111448356 [Cucurbita moschata][more]
XP_023540291.11.4e-12098.68uncharacterized protein LOC111800711 [Cucurbita pepo subsp. pepo][more]
XP_022972158.11.3e-11896.92uncharacterized protein LOC111470781 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FY523.1e-12199.12uncharacterized protein LOC111448356 OS=Cucurbita moschata OX=3662 GN=LOC1114483... [more]
A0A6J1I9286.4e-11996.92uncharacterized protein LOC111470781 OS=Cucurbita maxima OX=3661 GN=LOC111470781... [more]
A0A0A0L5G42.5e-8669.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171130 PE=4 SV=1[more]
A0A6J1GVZ72.3e-8469.92uncharacterized protein LOC111457661 OS=Cucurbita moschata OX=3662 GN=LOC1114576... [more]
A0A6J1IXP55.7e-8374.24uncharacterized protein LOC111479468 OS=Cucurbita maxima OX=3661 GN=LOC111479468... [more]
Match NameE-valueIdentityDescription
AT1G09520.16.9e-2537.97LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12... [more]
AT3G17460.14.2e-1433.70PHD finger family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34451PHD FINGER FAMILY PROTEINcoord: 35..246
NoneNo IPR availablePANTHERPTHR34451:SF7PHD FINGER FAMILY PROTEINcoord: 35..246

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25656-RACarg25656-RAmRNA