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Carg25585 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTTGATTTTATAACCCCCGCAGACTCTAGAATCTGGCCAGAGTTTCAAGGAGTCGAAGAAGCAGCAATGGCGGGAAGTTCATCGAGATCGGCATTCTGGTGGCCGGAATTCGAATTTTCCATCAGATCTTCCATATTCCGGTGGACCGATGTCCTCTCCTCGCTTTTCTCATGGAACTGGAGCTCCGCCTGGTTTCGCCGTTTGCCTCGCGGCCTTCTCAACACTCCGGTTGTCGACGACCTCGTCTGGTCCGTCATGACCGCCTTCGAATCCGTCGCCTTAGTCTCCATGATCGGCTTCTTCTTCGTCTTCTACGGCTGCAACTTGTAA ATGCTTGATTTTATAACCCCCGCAGACTCTAGAATCTGGCCAGAGTTTCAAGGAGTCGAAGAAGCAGCAATGGCGGGAAGTTCATCGAGATCGGCATTCTGGTGGCCGGAATTCGAATTTTCCATCAGATCTTCCATATTCCGGTGGACCGATGTCCTCTCCTCGCTTTTCTCATGGAACTGGAGCTCCGCCTGGTTTCGCCGTTTGCCTCGCGGCCTTCTCAACACTCCGGTTGTCGACGACCTCGTCTGGTCCGTCATGACCGCCTTCGAATCCGTCGCCTTAGTCTCCATGATCGGCTTCTTCTTCGTCTTCTACGGCTGCAACTTGTAA ATGCTTGATTTTATAACCCCCGCAGACTCTAGAATCTGGCCAGAGTTTCAAGGAGTCGAAGAAGCAGCAATGGCGGGAAGTTCATCGAGATCGGCATTCTGGTGGCCGGAATTCGAATTTTCCATCAGATCTTCCATATTCCGGTGGACCGATGTCCTCTCCTCGCTTTTCTCATGGAACTGGAGCTCCGCCTGGTTTCGCCGTTTGCCTCGCGGCCTTCTCAACACTCCGGTTGTCGACGACCTCGTCTGGTCCGTCATGACCGCCTTCGAATCCGTCGCCTTAGTCTCCATGATCGGCTTCTTCTTCGTCTTCTACGGCTGCAACTTGTAA MLDFITPADSRIWPEFQGVEEAAMAGSSSRSAFWWPEFEFSIRSSIFRWTDVLSSLFSWNWSSAWFRRLPRGLLNTPVVDDLVWSVMTAFESVALVSMIGFFFVFYGCNL Homology
BLAST of Carg25585 vs. NCBI nr
Match: KAG6586209.1 (hypothetical protein SDJN03_18942, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021036.1 hypothetical protein SDJN02_17724, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 230.3 bits (586), Expect = 7.9e-57 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0
BLAST of Carg25585 vs. NCBI nr
Match: XP_038890638.1 (uncharacterized protein LOC120080142 [Benincasa hispida]) HSP 1 Score: 160.2 bits (404), Expect = 1.0e-35 Identity = 76/87 (87.36%), Postives = 80/87 (91.95%), Query Frame = 0
BLAST of Carg25585 vs. NCBI nr
Match: KAG7030114.1 (hypothetical protein SDJN02_08461, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 115.5 bits (288), Expect = 2.8e-22 Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 0
BLAST of Carg25585 vs. NCBI nr
Match: KAG8648322.1 (hypothetical protein MANES_09G177901v8 [Manihot esculenta]) HSP 1 Score: 81.3 bits (199), Expect = 5.9e-12 Identity = 53/105 (50.48%), Postives = 64/105 (60.95%), Query Frame = 0
BLAST of Carg25585 vs. NCBI nr
Match: XP_034707279.1 (uncharacterized protein LOC117930725 [Vitis riparia]) HSP 1 Score: 76.6 bits (187), Expect = 1.5e-10 Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 0
BLAST of Carg25585 vs. ExPASy TrEMBL
Match: A0A2C9VC06 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G177900 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 2.4e-11 Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 0
BLAST of Carg25585 vs. ExPASy TrEMBL
Match: A0A6A4NKY2 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr21g0310201 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 7.0e-11 Identity = 43/82 (52.44%), Postives = 57/82 (69.51%), Query Frame = 0
BLAST of Carg25585 vs. ExPASy TrEMBL
Match: A0A059B3V1 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H03298 PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 9.2e-11 Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 0
BLAST of Carg25585 vs. ExPASy TrEMBL
Match: A0A6A4QE70 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr06g0167441 PE=4 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 1.6e-10 Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 0
BLAST of Carg25585 vs. ExPASy TrEMBL
Match: A0A068TTT5 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00025640001 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10 Identity = 40/85 (47.06%), Postives = 57/85 (67.06%), Query Frame = 0
BLAST of Carg25585 vs. TAIR 10
Match: AT5G26790.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 58.5 bits (140), Expect = 3.8e-09 Identity = 36/78 (46.15%), Postives = 45/78 (57.69%), Query Frame = 0
BLAST of Carg25585 vs. TAIR 10
Match: AT5G49525.1 (unknown protein; Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 46.2 bits (108), Expect = 2.0e-05 Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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