Carg25396 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25396
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like
Location	Carg_Chr18: 3587435 .. 3587938 (+)
RNA-Seq Expression	Carg25396
Synteny	Carg25396

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCTGCCGTCGCCGCCGCCGCTGCCGCCGCCCTCAGACGCCGGAGCTCCTCCAACTCCACCGCCTCCGATGGTTTATACACTCAATATTACCCCTCTCTCTCTCTGCCAAAGATGCCTCTCCGACAGCCGCCATTGTTCAGCCGATACGAGACCCAGAAACGGAAGGACTGGAACAACTTCCGGCAGTACTTCAGAACCCACTTCCCGAAATTAAGCCTCGCTCGCTGCAGCGGAGAGAATGTCGTGGAATTCCTCAGCTACCTCGACGGATTCGGCCAAACAAAAATCCACGCCGCCACCTGCAGCAACTCCGGCCACCGCTACCCAGCAGATATCTGCTGCGATTGCCCCACCCGGCAGCCGTGGACCAGCCTCAACGCACTCATCGGCCGCCTCAAAGTCGCCTTCGTGGAAAACGGCGGAAATCCGGTGACCAACCCGTTTAACGCCGTCGACGTCAAAGCTTACCTCATCGATCTCAAGGACTCTCAAAGCTAA

mRNA sequence

ATGTCAGCTGCCGTCGCCGCCGCCGCTGCCGCCGCCCTCAGACGCCGGAGCTCCTCCAACTCCACCGCCTCCGATGGTTTATACACTCAATATTACCCCTCTCTCTCTCTGCCAAAGATGCCTCTCCGACAGCCGCCATTGTTCAGCCGATACGAGACCCAGAAACGGAAGGACTGGAACAACTTCCGGCAGTACTTCAGAACCCACTTCCCGAAATTAAGCCTCGCTCGCTGCAGCGGAGAGAATGTCGTGGAATTCCTCAGCTACCTCGACGGATTCGGCCAAACAAAAATCCACGCCGCCACCTGCAGCAACTCCGGCCACCGCTACCCAGCAGATATCTGCTGCGATTGCCCCACCCGGCAGCCGTGGACCAGCCTCAACGCACTCATCGGCCGCCTCAAAGTCGCCTTCGTGGAAAACGGCGGAAATCCGGTGACCAACCCGTTTAACGCCGTCGACGTCAAAGCTTACCTCATCGATCTCAAGGACTCTCAAAGCTAA

Coding sequence (CDS)

ATGTCAGCTGCCGTCGCCGCCGCCGCTGCCGCCGCCCTCAGACGCCGGAGCTCCTCCAACTCCACCGCCTCCGATGGTTTATACACTCAATATTACCCCTCTCTCTCTCTGCCAAAGATGCCTCTCCGACAGCCGCCATTGTTCAGCCGATACGAGACCCAGAAACGGAAGGACTGGAACAACTTCCGGCAGTACTTCAGAACCCACTTCCCGAAATTAAGCCTCGCTCGCTGCAGCGGAGAGAATGTCGTGGAATTCCTCAGCTACCTCGACGGATTCGGCCAAACAAAAATCCACGCCGCCACCTGCAGCAACTCCGGCCACCGCTACCCAGCAGATATCTGCTGCGATTGCCCCACCCGGCAGCCGTGGACCAGCCTCAACGCACTCATCGGCCGCCTCAAAGTCGCCTTCGTGGAAAACGGCGGAAATCCGGTGACCAACCCGTTTAACGCCGTCGACGTCAAAGCTTACCTCATCGATCTCAAGGACTCTCAAAGCTAA

Protein sequence

MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKDWNNFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPTRQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS

Homology

[Close]

BLAST of Carg25396 vs. NCBI nr
Match: KAG6573434.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012581.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 341.7 bits (875), Expect = 3.7e-90
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKDWN 60
           MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKDWN
Sbjct: 1   MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKDWN 60

Query: 61  NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPT 120
           NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPT
Sbjct: 61  NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPT 120

Query: 121 RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS 168
           RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS
Sbjct: 121 RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS 167

[Close]

BLAST of Carg25396 vs. NCBI nr
Match: XP_022954523.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita moschata])

HSP 1 Score: 340.9 bits (873), Expect = 6.3e-90
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKDWN 60
           MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKDWN
Sbjct: 1   MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKDWN 60

Query: 61  NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPT 120
           NFRQYFRTHFPKLSLARCSGENVVEFLSY+DGFGQTKIHAATCSNSGHRYPADICCDCPT
Sbjct: 61  NFRQYFRTHFPKLSLARCSGENVVEFLSYIDGFGQTKIHAATCSNSGHRYPADICCDCPT 120

Query: 121 RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS 168
           RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS
Sbjct: 121 RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS 167

[Close]

BLAST of Carg25396 vs. NCBI nr
Match: XP_022994903.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 339.0 bits (868), Expect = 2.4e-89
Identity = 165/167 (98.80%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKDWN 60
           MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKR+DWN
Sbjct: 1   MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRQDWN 60

Query: 61  NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPT 120
           NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPT
Sbjct: 61  NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPT 120

Query: 121 RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS 168
           RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLID+KDSQS
Sbjct: 121 RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDVKDSQS 167

[Close]

BLAST of Carg25396 vs. NCBI nr
Match: XP_022994902.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 339.0 bits (868), Expect = 2.4e-89
Identity = 165/167 (98.80%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKDWN 60
           MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKR+DWN
Sbjct: 1   MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRQDWN 60

Query: 61  NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPT 120
           NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPT
Sbjct: 61  NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPT 120

Query: 121 RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS 168
           RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLID+KDSQS
Sbjct: 121 RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDVKDSQS 167

[Close]

BLAST of Carg25396 vs. NCBI nr
Match: XP_023542040.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 339.0 bits (868), Expect = 2.4e-89
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKDWN 60
           MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKR+DWN
Sbjct: 1   MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRRDWN 60

Query: 61  NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPT 120
           NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYP DICCDCPT
Sbjct: 61  NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPTDICCDCPT 120

Query: 121 RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS 168
           RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS
Sbjct: 121 RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS 167

[Close]

BLAST of Carg25396 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.1e-36
Identity = 82/160 (51.25%), Postives = 99/160 (61.88%), Query Frame = 0


Query: 8   AAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKDWNNFRQYFR 67
           AAAA     SSS+S++S G  T                   SRYE QKR+DWN F QY R
Sbjct: 22  AAAATTTTTSSSSSSSSGGSGTNQ----------------LSRYENQKRRDWNTFGQYLR 81

Query: 68  THFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPTRQPWTSL 127
            H P LSL+RCSG +V+EFL YLD FG+TK+H   C   GH  P   C  CP RQ W SL
Sbjct: 82  NHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCA-CPLRQAWGSL 141

Query: 128 NALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS 168
           +ALIGRL+ AF ENGG+P TNPF A  V+ YL +++DSQ+
Sbjct: 142 DALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQA 164

[Close]

BLAST of Carg25396 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-35
Identity = 81/155 (52.26%), Postives = 96/155 (61.94%), Query Frame = 0


Query: 13  LRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKDWNNFRQYFRTHFPK 72
           +   SSS + A+ G  TQ   S S P          SRYE QKR+DWN F QY R H P 
Sbjct: 23  ISNNSSSVTGATGGEATQPLSSSSSPSAN------SSRYENQKRRDWNTFGQYLRNHRPP 82

Query: 73  LSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPTRQPWTSLNALIG 132
           LSL+RCSG +V+EFL YLD FG+TK+H   C   GH  P    C CP RQ W SL+ALIG
Sbjct: 83  LSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNP-PAPCPCPLRQAWGSLDALIG 142

Query: 133 RLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS 168
           RL+ AF ENGG P TNPF A  V+ YL +++D QS
Sbjct: 143 RLRAAFEENGGKPETNPFGARAVRLYLREVRDMQS 170

[Close]

BLAST of Carg25396 vs. ExPASy Swiss-Prot
Match: A2XVI8 (Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-35
Identity = 73/134 (54.48%), Postives = 89/134 (66.42%), Query Frame = 0


Query: 34  SLSLPKMPLRQPPLFSRYETQKRKDWNNFRQYFRTHFPKLSLARCSGENVVEFLSYLDGF 93
           S S P M    P   SRYE QKR+DWN F QY R H P LSLA+CSG +V+EFL YLD F
Sbjct: 25  SNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRYLDQF 84

Query: 94  GQTKIHAATCSNSGHRYPADICCDCPTRQPWTSLNALIGRLKVAFVENGGNPVTNPFNAV 153
           G+TK+H A C   GH  P    C CP RQ W SL+AL+GRL+ AF ENGG P +NPF A 
Sbjct: 85  GKTKVHTAACPFFGHPSP-PAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAAR 144

Query: 154 DVKAYLIDLKDSQS 168
            V+ YL ++++ Q+
Sbjct: 145 AVRLYLREVREHQA 157

[Close]

BLAST of Carg25396 vs. ExPASy Swiss-Prot
Match: Q7XRS1 (Protein G1-like4 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L4 PE=1 SV=2)

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-35
Identity = 73/134 (54.48%), Postives = 89/134 (66.42%), Query Frame = 0


Query: 34  SLSLPKMPLRQPPLFSRYETQKRKDWNNFRQYFRTHFPKLSLARCSGENVVEFLSYLDGF 93
           S S P M    P   SRYE QKR+DWN F QY R H P LSLA+CSG +V+EFL YLD F
Sbjct: 25  SNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRYLDQF 84

Query: 94  GQTKIHAATCSNSGHRYPADICCDCPTRQPWTSLNALIGRLKVAFVENGGNPVTNPFNAV 153
           G+TK+H A C   GH  P    C CP RQ W SL+AL+GRL+ AF ENGG P +NPF A 
Sbjct: 85  GKTKVHTAACPFFGHPSP-PAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAAR 144

Query: 154 DVKAYLIDLKDSQS 168
            V+ YL ++++ Q+
Sbjct: 145 AVRLYLREVREHQA 157

[Close]

BLAST of Carg25396 vs. ExPASy Swiss-Prot
Match: Q9LMK2 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.6e-35
Identity = 68/130 (52.31%), Postives = 89/130 (68.46%), Query Frame = 0


Query: 38  PKMPLRQPPLFSRYETQKRKDWNNFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTK 97
           P      P   SRYE+QKR+DWN F QY + H P L+L+RCSG +V+EFL YLD FG+TK
Sbjct: 19  PSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTK 78

Query: 98  IHAATCSNSGHRYPADICCDCPTRQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKA 157
           +H A C   GH+ P    C CP +Q W SL+ALIGRL+ A+ ENGG P +NPF A  V+ 
Sbjct: 79  VHVAACPYFGHQQPPS-PCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRI 138

Query: 158 YLIDLKDSQS 168
           YL ++++SQ+
Sbjct: 139 YLREVRESQA 147

[Close]

BLAST of Carg25396 vs. ExPASy TrEMBL
Match: A0A6J1GRB8 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita moschata OX=3662 GN=LOC111456765 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.0e-90
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKDWN 60
           MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKDWN
Sbjct: 1   MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKDWN 60

Query: 61  NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPT 120
           NFRQYFRTHFPKLSLARCSGENVVEFLSY+DGFGQTKIHAATCSNSGHRYPADICCDCPT
Sbjct: 61  NFRQYFRTHFPKLSLARCSGENVVEFLSYIDGFGQTKIHAATCSNSGHRYPADICCDCPT 120

Query: 121 RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS 168
           RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS
Sbjct: 121 RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS 167

[Close]

BLAST of Carg25396 vs. ExPASy TrEMBL
Match: A0A6J1K6D6 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111490488 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.2e-89
Identity = 165/167 (98.80%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKDWN 60
           MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKR+DWN
Sbjct: 1   MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRQDWN 60

Query: 61  NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPT 120
           NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPT
Sbjct: 61  NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPT 120

Query: 121 RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS 168
           RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLID+KDSQS
Sbjct: 121 RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDVKDSQS 167

[Close]

BLAST of Carg25396 vs. ExPASy TrEMBL
Match: A0A6J1JX76 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490488 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.2e-89
Identity = 165/167 (98.80%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKDWN 60
           MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKR+DWN
Sbjct: 1   MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRQDWN 60

Query: 61  NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPT 120
           NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPT
Sbjct: 61  NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPT 120

Query: 121 RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS 168
           RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLID+KDSQS
Sbjct: 121 RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDVKDSQS 167

[Close]

BLAST of Carg25396 vs. ExPASy TrEMBL
Match: A0A6J1K0K1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490488 PE=3 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 2.6e-89
Identity = 164/167 (98.20%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKDWN 60
           MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKR+DWN
Sbjct: 1   MSAAVAAAAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRQDWN 60

Query: 61  NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPT 120
           NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPT
Sbjct: 61  NFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPT 120

Query: 121 RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS 168
           RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLID+KDSQ+
Sbjct: 121 RQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDVKDSQA 167

[Close]

BLAST of Carg25396 vs. ExPASy TrEMBL
Match: A0A5D3E452 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold74574G00010 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.7e-56
Identity = 118/168 (70.24%), Postives = 130/168 (77.38%), Query Frame = 0


Query: 1   MSAAVAAAAAAALRRRSSSNST--ASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKD 60
           MSAAVAAAAAAAL RR+SS ST  +SD  Y+ YYPS S   + +R PPL SRYE  KR+D
Sbjct: 1   MSAAVAAAAAAALGRRTSSTSTPSSSDSFYSHYYPSAS---VSVRPPPLLSRYECLKRRD 60

Query: 61  WNNFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDC 120
           WN FRQY R+  P LSLA CSG NVVEFL YLD  GQ+KIH ATC N G RYP D  CDC
Sbjct: 61  WNRFRQYLRSRCPTLSLACCSGANVVEFLCYLDELGQSKIHGATCPNFGQRYPVDPYCDC 120

Query: 121 PTRQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQ 167
           PT+QPWT+L ALIGRL+VAF ENGGNPVTNPFN VDVK YL D+KDSQ
Sbjct: 121 PTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQ 165

[Close]

BLAST of Carg25396 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 151.8 bits (382), Expect = 5.0e-37
Identity = 82/160 (51.25%), Postives = 99/160 (61.88%), Query Frame = 0


Query: 8   AAAAALRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKDWNNFRQYFR 67
           AAAA     SSS+S++S G  T                   SRYE QKR+DWN F QY R
Sbjct: 22  AAAATTTTTSSSSSSSSGGSGTNQ----------------LSRYENQKRRDWNTFGQYLR 81

Query: 68  THFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPTRQPWTSL 127
            H P LSL+RCSG +V+EFL YLD FG+TK+H   C   GH  P   C  CP RQ W SL
Sbjct: 82  NHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCA-CPLRQAWGSL 141

Query: 128 NALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS 168
           +ALIGRL+ AF ENGG+P TNPF A  V+ YL +++DSQ+
Sbjct: 142 DALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQA 164

[Close]

BLAST of Carg25396 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 151.0 bits (380), Expect = 8.6e-37
Identity = 81/155 (52.26%), Postives = 96/155 (61.94%), Query Frame = 0


Query: 13  LRRRSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKDWNNFRQYFRTHFPK 72
           +   SSS + A+ G  TQ   S S P          SRYE QKR+DWN F QY R H P 
Sbjct: 23  ISNNSSSVTGATGGEATQPLSSSSSPSAN------SSRYENQKRRDWNTFGQYLRNHRPP 82

Query: 73  LSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPTRQPWTSLNALIG 132
           LSL+RCSG +V+EFL YLD FG+TK+H   C   GH  P    C CP RQ W SL+ALIG
Sbjct: 83  LSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNP-PAPCPCPLRQAWGSLDALIG 142

Query: 133 RLKVAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS 168
           RL+ AF ENGG P TNPF A  V+ YL +++D QS
Sbjct: 143 RLRAAFEENGGKPETNPFGARAVRLYLREVRDMQS 170

[Close]

BLAST of Carg25396 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 149.1 bits (375), Expect = 3.3e-36
Identity = 68/130 (52.31%), Postives = 89/130 (68.46%), Query Frame = 0


Query: 38  PKMPLRQPPLFSRYETQKRKDWNNFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTK 97
           P      P   SRYE+QKR+DWN F QY + H P L+L+RCSG +V+EFL YLD FG+TK
Sbjct: 19  PSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTK 78

Query: 98  IHAATCSNSGHRYPADICCDCPTRQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKA 157
           +H A C   GH+ P    C CP +Q W SL+ALIGRL+ A+ ENGG P +NPF A  V+ 
Sbjct: 79  VHVAACPYFGHQQPPS-PCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRI 138

Query: 158 YLIDLKDSQS 168
           YL ++++SQ+
Sbjct: 139 YLREVRESQA 147

[Close]

BLAST of Carg25396 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 139.8 bits (351), Expect = 2.0e-33
Identity = 72/152 (47.37%), Postives = 94/152 (61.84%), Query Frame = 0


Query: 16  RSSSNSTASDGLYTQYYPSLSLPKMPLRQPPLFSRYETQKRKDWNNFRQYFRTHFPKLSL 75
           ++ +N   +  L TQ   S S        PP  SRYE QKR+DWN F QY R H P LSL
Sbjct: 6   QNHNNRNPNTSLSTQTPSSFS-------SPPSSSRYENQKRRDWNTFCQYLRNHHPPLSL 65

Query: 76  ARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPADICCDCPTRQPWTSLNALIGRLK 135
           A CSG +V++FL YLD FG+TK+H   C+  G   P    C CP RQ W SL+ALIGRL+
Sbjct: 66  ASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNP-PAPCPCPLRQAWGSLDALIGRLR 125

Query: 136 VAFVENGGNPVTNPFNAVDVKAYLIDLKDSQS 168
            A+ ENGG P T+PF +  V+ +L +++D Q+
Sbjct: 126 AAYEENGGAPETSPFGSRSVRIFLREVRDFQA 149

[Close]

BLAST of Carg25396 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 138.7 bits (348), Expect = 4.4e-33
Identity = 66/123 (53.66%), Postives = 82/123 (66.67%), Query Frame = 0


Query: 45  PPLFSRYETQKRKDWNNFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCS 104
           PP  SRYE QKR+DWN F QY R H P LSL  CSG +V+EFL YLD FG+TK+H   C+
Sbjct: 20  PPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCA 79

Query: 105 NSGHRYPADICCDCPTRQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDLKD 164
             G   P    C CP RQ W SL+ALIGRL+ A+ ENGG P  NPF +  V+ +L +++D
Sbjct: 80  FFGLPNP-PAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRD 139

Query: 165 SQS 168
            Q+
Sbjct: 140 FQA 141

The following BLAST results are available for this feature:

BLAST of Carg25396 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573434.1	3.7e-90	100.00	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subs...	[more]
XP_022954523.1	6.3e-90	99.40	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita moschata]	[more]
XP_022994903.1	2.4e-89	98.80	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like isoform X3 [Cucurbita maxima]	[more]
XP_022994902.1	2.4e-89	98.80	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like isoform X2 [Cucurbita maxima]	[more]
XP_023542040.1	2.4e-89	98.80	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg25396 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW68	7.1e-36	51.25	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
O82268	1.2e-35	52.26	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XVI8	2.7e-35	54.48	Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1	[more]
Q7XRS1	2.7e-35	54.48	Protein G1-like4 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L4 PE=1 SV=2	[more]
Q9LMK2	4.6e-35	52.31	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]

BLAST of Carg25396 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GRB8	3.0e-90	99.40	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1K6D6	1.2e-89	98.80	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like isoform X3 OS=Cucurbita maxima O...	[more]
A0A6J1JX76	1.2e-89	98.80	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like isoform X2 OS=Cucurbita maxima O...	[more]
A0A6J1K0K1	2.6e-89	98.20	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like isoform X1 OS=Cucurbita maxima O...	[more]
A0A5D3E452	3.7e-56	70.24	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Carg25396 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23290.2	5.0e-37	51.25	Protein of unknown function (DUF640)	[more]
AT2G31160.1	8.6e-37	52.26	Protein of unknown function (DUF640)	[more]
AT1G07090.1	3.3e-36	52.31	Protein of unknown function (DUF640)	[more]
AT3G04510.1	2.0e-33	47.37	Protein of unknown function (DUF640)	[more]
AT5G28490.1	4.4e-33	53.66	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 43..164 e-value: 5.0E-42 score: 143.0
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 50..167 score: 38.852566
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 17..167
None	No IPR available	PANTHER	PTHR31165:SF41	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 4	coord: 17..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25396-RA	Carg25396-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus