Carg25172 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCGACCATTCCGATGATTTACACGAACTTCTTGACAGTATGCCTTCAAACTTCATGCAATACGTAGTGGGTTTCCATTTCTTTAACGTTTTTCTTCATGTTTGTTATGAATTTGTCTCGGATTGTCTCAGGTGCTTTGGACGATTTTCAGAAAATCGACCTTAACCATTCCGTTTCGAGGTTTATATCAATCAATTTCTGTGTTGGAAGCTTTGTTTTGTAGCGTATTTAGTTGGATTCTTGATGTTTTTAGTTGTGTGGTGTTGTAGAAATGGAGATGGTGCGGAGAGTAGAGGGACTCTTCCTTCTGGGGTTCAAGGTTTAGGGATGGGTTTGCCTGACTTGAGGAGCATGAAAAAAGGGAAGCAGAAGGTTTCGAAGGAATCTCATGTGTCTGAGGCTCTTGATAAGCTTAGAGAACAGACCAGAGAGGCCGTCAAGGGGCTTGAATCGGTCACTGGCCCTAAAGCTGGTGGTGATGATTTTGGTCAAGATGCTTTGATGGAAGATTGGGTGAAGCAGTTCGAGGAGATGGCTGGCTCTCAGGTACATTGCTTGAAAAGCCTTTGGAACTTTTCAACGTTGAATTTGGCCTTTAATGGAAATACTTTTCCTAGTTTTGATGCGGCTTGAACATAATAATTTTTGTTAGGAATCACGCCCCCATTCGGTAGTGGTATGATATTGTCAATTTGAGCTTTCATGACTTTGCTTTTGACTTCTCCAAAAGGTCTCATACCAATGGAGATGTATTCCTTACTTATATATGAACTTATGATCCACCCTTAATTAGCCAATGTGGGACTCCTCCGATAATCCTCCCCTCGAACAAAGTACACCATAGATCCTCTCCTGAGGTCTATGGATGGAGGATTCGAACAACCTCCCCTTAATCTAGGCTCGACTCCTTCTCTGAAGCCTTTGAACAAAGTACACCATTTGTTCGATACTTGAGTCACTTTTGACTACACTTTCAAGGGTCTCAACTTCTTTGTTCGACATTTGAGGATTCTATTGACATGACTAAGTTAAGGGCATGACTTTGATACCATGTTTAGGAATCACGACCCTCTACAATGGTATGATATTGTCCACTTTGAGCATAACTTCTCCTGGCTTTGCTTTTGGCTTCTCCAAAAAGCCTCATACCAAGAGAGATATATTCCTTACTTATATATAAACCCATAATCAATCCCTTAATTAGTGGAGGCGAAACTCCTCTACCAACAATCCTCAACAATTTTGTAATGTTATGTGTTTAGATGCCGACTTTAAGGTGAGTTTGGCATGAAGTTTGAACACTGGGAAGTACTTTTAGCCGATTAAACTCTTTTCAAGGTCTTTTAGGAATACTTTTATGCTATTTGGTTTTCAGTTTTGAGGCCTTTCTTCTGAAAATGCTCATAGAAAAGTGCAGAGAATAAAGATACTTGGAGTTTCCATTGTTCCCATCAGAATCTTCTTTCTTGATCCGTTATCTTAAATTACCTCCATATCACTTGTTTTATTGCAAGATTGCCTTTAGAAGGACAATATGTTTTTTAGTTATTCTTTTTCATATTTTGCTTTAGGTCCCTCAATTATTGTATATCAGCCCAACCCCACCCCATCGTTAGTAGATATTGTCCTCTTTGGGCTTCCCCTCAAGATTTTTAAAATGTCTCTACTAGGAAGAGGTTTCCACACCCTTATAAAGGGTGTTTCGATCTCCTCCCCAATCAATGTGGGATCTCACGGGGCCCAGCGTCCTCGCTAGCACTCGTTCCCTTCTTCAATCAATGTGGGACCTCCCAATCAACCCCCTTCGGGCCCAGCGTCCTTGCTGGCACACCGCCTTGTGTCCACCTCCTTCAGGGCTCAGCCTTCTCGCTGGCACATCGCCCAGTGTCTAACTCTGATACCATTTGTAACGGCTTAAGCCCACCGCCAGCAGATACTGTTCTCTTTGGATTTTTCCTTAAGGTTTTTAAAACGCGTATGCTAGGGAGAGGTTTCCACAGCCTTATAAAGGGTGTTCCATTTTCCTCTCCAATCGATGTGAGATCTTTTTTCCTTCCGACCTTTAGACCCTTGAGATTCCTATTTATATAGTGCAGTTACATGGAGTCTTAACTTGTATTAAGGAGTTCAAATGTTTTACGTATTAAGTTTGTCTTTGGAATCAATCACTGCTTTGCTTTATTAATGTGTTATACAATGTGTTGGCTGTGGATACCAAATTTTCCTCCTTAATAACGCGTAGCTTAGGTCTCTTTGGGACATCCGATAAAATTGGAACGTTACAGAGAGATGATAACACATAAAATGGTGGAAGGTATTCACAGAGGAACATTCACGCCTTCTAGTTCTCAATCGAGCTTTTTTGATACTCATTTTTCATATCTCCCTCCTTGTATTGATACTCACCCTCCCATTAATCTCTTGGAACGTTTCGCTCGCTTCAAGGCCAGCTACCGAGACATCAAAGGCAAGGTTTTAAGTTGGGGTATTGCATTGGGGCACCCTTTGGGATCATTTTTGTGGAGTCTTGATCACTCTTTTCTGATCCTAATCTGACTTATGTGTAGCTAGTTTTTATGTGTTTTATCCCATCAAAATCTTACCATGAACTCCAACGTGCACTATTTCTTCAACCGTAGAACATGGAGTCGATGGTCGAGACGATGATGCAACAGCTTCTATCCAAAGAGATTCTCCTTGAACCAGTGAAGGAAATAGGAGAAAGATATCCCAAATGGTTGGAGGAGCATAAAGCAAGTTTGAGCAAAGAAGACTACGAACGCTATTCTCAGCAACACGAACTGATAAAAGATCTCAACATCGTGTATGAAAACGAACCCGATAACTTCGACAAAATTGTCGAGCTGATGCAGAAAATGCAAGAATGTGGTCAGCCACCAAATGATATTGTGCAAGAGCTGGGACCTGATTTCGATTTAACTAATCTCGCACAATTGTGAGTTTGTTCTTCTCATGTTGTGAATTAGCTGATTATTTGTGCTGTCAATAATTAACATATTATTTGCTTGCAGATCTCCTGAGATGTTGGAGTCTCAGACAAATTGCTGTATAATGTGAGGTAAGGCTTTTGGATGCTCTAATTTGTGGTGCTTCCTTCCATTTATTCTCATATTTGCTCAGAAATATTGTTGTTTCAAACAAATTACTTTGTCCAATAATCATGTGTTCAATTTCAATGTTTATTGGACTCGGAATGGATATCTCTCCCTCACGCACACATACACATGAGATTTTTGTTGTATCAGAAGTGATTTCTTCTATCTTCTCTGTTGTGCCATTGCTTTGGCTTCAATCTTGCACTCTCTCCATCTCTCATGCATGCATGCACGCACGCATACACACAATATTTCTGTAGTATCAGAAATGATCTCTATCTTGTCTGTCGTACATTTAGTTTGGTTTGAATCTTGCACTATCTCGATCTCTCGTGCCCTTGCATATGCCTTTTCTGTAGTATAAAAAATTATTTCTACTTCATTTGTTGTGGATCATGTACTGTCTTGATTTCTCATACACGCATGCGCGCTCTCACACTCGATAGTGTTTGTATTACTTGTTTATATGTGTAAGTTTTGTT ATGGCCGACCATTCCGATGATTTACACGAACTTCTTGACAGTGCTTTGGACGATTTTCAGAAAATCGACCTTAACCATTCCGTTTCGAGAAATGGAGATGGTGCGGAGAGTAGAGGGACTCTTCCTTCTGGGGTTCAAGGTTTAGGGATGGGTTTGCCTGACTTGAGGAGCATGAAAAAAGGGAAGCAGAAGGTTTCGAAGGAATCTCATGTGTCTGAGGCTCTTGATAAGCTTAGAGAACAGACCAGAGAGGCCGTCAAGGGGCTTGAATCGGTCACTGGCCCTAAAGCTGGTGGTGATGATTTTGGTCAAGATGCTTTGATGGAAGATTGGGTGAAGCAGTTCGAGGAGATGGCTGGCTCTCAGAACATGGAGTCGATGGTCGAGACGATGATGCAACAGCTTCTATCCAAAGAGATTCTCCTTGAACCAGTGAAGGAAATAGGAGAAAGATATCCCAAATGGTTGGAGGAGCATAAAGCAAGTTTGAGCAAAGAAGACTACGAACGCTATTCTCAGCAACACGAACTGATAAAAGATCTCAACATCGTGTATGAAAACGAACCCGATAACTTCGACAAAATTGTCGAGCTGATGCAGAAAATGCAAGAATGTGGTCAGCCACCAAATGATATTGTGCAAGAGCTGGGACCTGATTTCGATTTAACTAATCTCGCACAATTATCTCCTGAGATGTTGGAGTCTCAGACAAATTGCTGTATAATGTGAGGTAAGGCTTTTGGATGCTCTAATTTGTGGTGCTTCCTTCCATTTATTCTCATATTTGCTCAGAAATATTGTTGTTTCAAACAAATTACTTTGTCCAATAATCATGTGTTCAATTTCAATGTTTATTGGACTCGGAATGGATATCTCTCCCTCACGCACACATACACATGAGATTTTTGTTGTATCAGAAGTGATTTCTTCTATCTTCTCTGTTGTGCCATTGCTTTGGCTTCAATCTTGCACTCTCTCCATCTCTCATGCATGCATGCACGCACGCATACACACAATATTTCTGTAGTATCAGAAATGATCTCTATCTTGTCTGTCGTACATTTAGTTTGGTTTGAATCTTGCACTATCTCGATCTCTCGTGCCCTTGCATATGCCTTTTCTGTAGTATAAAAAATTATTTCTACTTCATTTGTTGTGGATCATGTACTGTCTTGATTTCTCATACACGCATGCGCGCTCTCACACTCGATAGTGTTTGTATTACTTGTTTATATGTGTAAGTTTTGTT ATGGCCGACCATTCCGATGATTTACACGAACTTCTTGACAGTGCTTTGGACGATTTTCAGAAAATCGACCTTAACCATTCCGTTTCGAGAAATGGAGATGGTGCGGAGAGTAGAGGGACTCTTCCTTCTGGGGTTCAAGGTTTAGGGATGGGTTTGCCTGACTTGAGGAGCATGAAAAAAGGGAAGCAGAAGGTTTCGAAGGAATCTCATGTGTCTGAGGCTCTTGATAAGCTTAGAGAACAGACCAGAGAGGCCGTCAAGGGGCTTGAATCGGTCACTGGCCCTAAAGCTGGTGGTGATGATTTTGGTCAAGATGCTTTGATGGAAGATTGGGTGAAGCAGTTCGAGGAGATGGCTGGCTCTCAGAACATGGAGTCGATGGTCGAGACGATGATGCAACAGCTTCTATCCAAAGAGATTCTCCTTGAACCAGTGAAGGAAATAGGAGAAAGATATCCCAAATGGTTGGAGGAGCATAAAGCAAGTTTGAGCAAAGAAGACTACGAACGCTATTCTCAGCAACACGAACTGATAAAAGATCTCAACATCGTGTATGAAAACGAACCCGATAACTTCGACAAAATTGTCGAGCTGATGCAGAAAATGCAAGAATGTGGTCAGCCACCAAATGATATTGTGCAAGAGCTGGGACCTGATTTCGATTTAACTAATCTCGCACAATTATCTCCTGAGATGTTGGAGTCTCAGACAAATTGCTGTATAATGTGA MADHSDDLHELLDSALDDFQKIDLNHSVSRNGDGAESRGTLPSGVQGLGMGLPDLRSMKKGKQKVSKESHVSEALDKLREQTREAVKGLESVTGPKAGGDDFGQDALMEDWVKQFEEMAGSQNMESMVETMMQQLLSKEILLEPVKEIGERYPKWLEEHKASLSKEDYERYSQQHELIKDLNIVYENEPDNFDKIVELMQKMQECGQPPNDIVQELGPDFDLTNLAQLSPEMLESQTNCCIM Homology
BLAST of Carg25172 vs. NCBI nr
Match: KAG7028388.1 (Peroxisome biogenesis protein 19-1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 473.8 bits (1218), Expect = 9.0e-130 Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0
BLAST of Carg25172 vs. NCBI nr
Match: KAG6596860.1 (Peroxisome biogenesis protein 19-1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 469.5 bits (1207), Expect = 1.7e-128 Identity = 240/242 (99.17%), Postives = 240/242 (99.17%), Query Frame = 0
BLAST of Carg25172 vs. NCBI nr
Match: XP_022958076.1 (peroxisome biogenesis protein 19-1-like [Cucurbita moschata]) HSP 1 Score: 464.9 bits (1195), Expect = 4.2e-127 Identity = 237/242 (97.93%), Postives = 239/242 (98.76%), Query Frame = 0
BLAST of Carg25172 vs. NCBI nr
Match: XP_023539043.1 (peroxisome biogenesis protein 19-2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 460.3 bits (1183), Expect = 1.0e-125 Identity = 235/242 (97.11%), Postives = 238/242 (98.35%), Query Frame = 0
BLAST of Carg25172 vs. NCBI nr
Match: XP_038906370.1 (peroxisome biogenesis protein 19-1-like [Benincasa hispida]) HSP 1 Score: 427.2 bits (1097), Expect = 9.6e-116 Identity = 218/242 (90.08%), Postives = 230/242 (95.04%), Query Frame = 0
BLAST of Carg25172 vs. ExPASy Swiss-Prot
Match: Q94EI3 (Peroxisome biogenesis protein 19-2 OS=Arabidopsis thaliana OX=3702 GN=PEX19-2 PE=1 SV=1) HSP 1 Score: 309.7 bits (792), Expect = 2.9e-83 Identity = 157/244 (64.34%), Postives = 201/244 (82.38%), Query Frame = 0
BLAST of Carg25172 vs. ExPASy Swiss-Prot
Match: Q9SRQ3 (Peroxisome biogenesis protein 19-1 OS=Arabidopsis thaliana OX=3702 GN=PEX19-1 PE=1 SV=1) HSP 1 Score: 307.8 bits (787), Expect = 1.1e-82 Identity = 162/248 (65.32%), Postives = 202/248 (81.45%), Query Frame = 0
BLAST of Carg25172 vs. ExPASy Swiss-Prot
Match: Q9QYU1 (Peroxisomal biogenesis factor 19 OS=Rattus norvegicus OX=10116 GN=Pex19 PE=1 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 3.8e-14 Identity = 78/284 (27.46%), Postives = 131/284 (46.13%), Query Frame = 0
BLAST of Carg25172 vs. ExPASy Swiss-Prot
Match: P40855 (Peroxisomal biogenesis factor 19 OS=Homo sapiens OX=9606 GN=PEX19 PE=1 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 6.5e-14 Identity = 77/289 (26.64%), Postives = 131/289 (45.33%), Query Frame = 0
BLAST of Carg25172 vs. ExPASy Swiss-Prot
Match: Q5R7U2 (Peroxisomal biogenesis factor 19 OS=Pongo abelii OX=9601 GN=PEX19 PE=2 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 6.5e-14 Identity = 78/289 (26.99%), Postives = 131/289 (45.33%), Query Frame = 0
BLAST of Carg25172 vs. ExPASy TrEMBL
Match: A0A6J1H106 (peroxisome biogenesis protein 19-1-like OS=Cucurbita moschata OX=3662 GN=LOC111459389 PE=4 SV=1) HSP 1 Score: 464.9 bits (1195), Expect = 2.0e-127 Identity = 237/242 (97.93%), Postives = 239/242 (98.76%), Query Frame = 0
BLAST of Carg25172 vs. ExPASy TrEMBL
Match: A0A6J1HN20 (peroxisome biogenesis protein 19-2-like OS=Cucurbita maxima OX=3661 GN=LOC111465099 PE=4 SV=1) HSP 1 Score: 424.9 bits (1091), Expect = 2.3e-115 Identity = 219/242 (90.50%), Postives = 228/242 (94.21%), Query Frame = 0
BLAST of Carg25172 vs. ExPASy TrEMBL
Match: A0A5D3CJA6 (Peroxisome biogenesis protein 19-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00320 PE=4 SV=1) HSP 1 Score: 424.5 bits (1090), Expect = 3.0e-115 Identity = 217/242 (89.67%), Postives = 229/242 (94.63%), Query Frame = 0
BLAST of Carg25172 vs. ExPASy TrEMBL
Match: A0A1S3BKN2 (peroxisome biogenesis protein 19-1-like OS=Cucumis melo OX=3656 GN=LOC103490885 PE=4 SV=1) HSP 1 Score: 424.5 bits (1090), Expect = 3.0e-115 Identity = 217/242 (89.67%), Postives = 229/242 (94.63%), Query Frame = 0
BLAST of Carg25172 vs. ExPASy TrEMBL
Match: A0A6J1E6H4 (peroxisome biogenesis protein 19-2-like OS=Cucurbita moschata OX=3662 GN=LOC111431048 PE=4 SV=1) HSP 1 Score: 422.2 bits (1084), Expect = 1.5e-114 Identity = 217/242 (89.67%), Postives = 228/242 (94.21%), Query Frame = 0
BLAST of Carg25172 vs. TAIR 10
Match: AT5G17550.1 (peroxin 19-2 ) HSP 1 Score: 309.7 bits (792), Expect = 2.1e-84 Identity = 157/244 (64.34%), Postives = 201/244 (82.38%), Query Frame = 0
BLAST of Carg25172 vs. TAIR 10
Match: AT3G03490.1 (peroxin 19-1 ) HSP 1 Score: 307.8 bits (787), Expect = 7.9e-84 Identity = 162/248 (65.32%), Postives = 202/248 (81.45%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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