Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCCCATCTCTGCAGCTTTCGGCGCTCCGGTGTCGGTAGACCGTTCACGCCACCCTCCTCCGCTCACGGTAAAGCCACAAACGCCCTTTAGAATTTGAAACTTTGTCCATACCCTTCTTCCTATTGTTTTACTCGATCTCAGACATATGTTTTAACTTTTAAAAGTGAGATGATTTATGTGATGTAGATGTTAGGAATCACGATCCTCGTGATGGTATGATATTATCCACTTTAAGTATAAGCTCTCACACGAATGGAAGGAGTATTCTTTATTTATAAACCCAAGATCACTCTCTAAATTAGTCAATGTGGGACTTACACCATACAACAATAGATAGAGATGGTTTTCCATTAAAAAAAATTTAATTTTTTTTTCTTTATAGAATTTAGGTTAATGTTATTTTTAAATTTTTATAGGTATTTTTTAAATATGAAACTACCCATTTTAATTTTAATTTTTTTTTTAAAGTTGGAAGATTATTAAAAATTTGAGGGTATTTTTTAAAATGGGTTTAAATCCAAAACTAAAAGTAAAAAAGTATTTAGGCTAATACAAAATTTAAGAATATTGTAGTTAATTTAGGTATTTTGGTTAATTTGGCGTGGATTTTGCAGGGTATGCAATGTGCCGGAGGAGACGGCCGCAACGGCGGTGGAGAGAGGAAAGAGAAGGGCGGAGAGAGATAGAGGCATGTATTGAGAAGAAAGAAATGAAGAAGGAGTATATGTCTTTGGAGGAGTTGCTGTTGGCTTCTCCGGCAGCGCCATCGGAGCGAGCTTTTGGAAATGGCGGCCATGGCGGATTCAAGAGAAAAGTGCATCCGACCAGGATGTCGCAGTGTTCCTCGTTTTGTCAGAGATCCGGTGTGGTTAGTGAATCAGTTGCAGAGGATCATGAGAACATTTGCAGACCCCAAACTGGTAAATTGAGGAAGAAAGTAAGCTTTAGGCTGCCGGAGGTGTCGGACGTTATTTTAATTTACTCGCCGGAGGGTGATGCCGCGGCCGACGGCGGGATTGTTGCTTCCTAG
mRNA sequence
ATGGGAGCCCATCTCTGCAGCTTTCGGCGCTCCGGTGTCGGTAGACCGTTCACGCCACCCTCCTCCGCTCACGGGCGGAGAGAGATAGAGGCATGTATTGAGAAGAAAGAAATGAAGAAGGAGTATATGTCTTTGGAGGAGTTGCTGTTGGCTTCTCCGGCAGCGCCATCGGAGCGAGCTTTTGGAAATGGCGGCCATGGCGGATTCAAGAGAAAAGTGCATCCGACCAGGATGTCGCAGTGTTCCTCGTTTTGTCAGAGATCCGGTGTGGTTAGTGAATCAGTTGCAGAGGATCATGAGAACATTTGCAGACCCCAAACTGGTAAATTGAGGAAGAAAGTAAGCTTTAGGCTGCCGGAGGTGTCGGACGTTATTTTAATTTACTCGCCGGAGGGTGATGCCGCGGCCGACGGCGGGATTGTTGCTTCCTAG
Coding sequence (CDS)
ATGGGAGCCCATCTCTGCAGCTTTCGGCGCTCCGGTGTCGGTAGACCGTTCACGCCACCCTCCTCCGCTCACGGGCGGAGAGAGATAGAGGCATGTATTGAGAAGAAAGAAATGAAGAAGGAGTATATGTCTTTGGAGGAGTTGCTGTTGGCTTCTCCGGCAGCGCCATCGGAGCGAGCTTTTGGAAATGGCGGCCATGGCGGATTCAAGAGAAAAGTGCATCCGACCAGGATGTCGCAGTGTTCCTCGTTTTGTCAGAGATCCGGTGTGGTTAGTGAATCAGTTGCAGAGGATCATGAGAACATTTGCAGACCCCAAACTGGTAAATTGAGGAAGAAAGTAAGCTTTAGGCTGCCGGAGGTGTCGGACGTTATTTTAATTTACTCGCCGGAGGGTGATGCCGCGGCCGACGGCGGGATTGTTGCTTCCTAG
Protein sequence
MGAHLCSFRRSGVGRPFTPPSSAHGRREIEACIEKKEMKKEYMSLEELLLASPAAPSERAFGNGGHGGFKRKVHPTRMSQCSSFCQRSGVVSESVAEDHENICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS
Homology
BLAST of Carg25130 vs. NCBI nr
Match:
KAG7019397.1 (hypothetical protein SDJN02_18358, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 291.6 bits (745), Expect = 3.7e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
Query: 1 MGAHLCSFRRSGVGRPFTPPSSAHGRREIEACIEKKEMKKEYMSLEELLLASPAAPSERA 60
MGAHLCSFRRSGVGRPFTPPSSAHGRREIEACIEKKEMKKEYMSLEELLLASPAAPSERA
Sbjct: 1 MGAHLCSFRRSGVGRPFTPPSSAHGRREIEACIEKKEMKKEYMSLEELLLASPAAPSERA 60
Query: 61 FGNGGHGGFKRKVHPTRMSQCSSFCQRSGVVSESVAEDHENICRPQTGKLRKKVSFRLPE 120
FGNGGHGGFKRKVHPTRMSQCSSFCQRSGVVSESVAEDHENICRPQTGKLRKKVSFRLPE
Sbjct: 61 FGNGGHGGFKRKVHPTRMSQCSSFCQRSGVVSESVAEDHENICRPQTGKLRKKVSFRLPE 120
Query: 121 VSDVILIYSPEGDAAADGGIVAS 144
VSDVILIYSPEGDAAADGGIVAS
Sbjct: 121 VSDVILIYSPEGDAAADGGIVAS 143
BLAST of Carg25130 vs. NCBI nr
Match:
KAG6583758.1 (hypothetical protein SDJN03_19690, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 276.2 bits (705), Expect = 1.6e-70
Identity = 141/162 (87.04%), Postives = 141/162 (87.04%), Query Frame = 0
Query: 1 MGAHLCSFRRSGVGRPFTPPSSAH-------------------GRREIEACIEKKEMKKE 60
MGAHLCSFRRSGVGRPFTPPSSAH GRREIEACIEKKEMKKE
Sbjct: 1 MGAHLCSFRRSGVGRPFTPPSSAHGYAMCRRRRPQRRWREEREGRREIEACIEKKEMKKE 60
Query: 61 YMSLEELLLASPAAPSERAFGNGGHGGFKRKVHPTRMSQCSSFCQRSGVVSESVAEDHEN 120
YMSLEELLLASP APSERAFGNGGHGGFKRKVHPTRMSQCSSFCQRSGVVSESVAEDHEN
Sbjct: 61 YMSLEELLLASPGAPSERAFGNGGHGGFKRKVHPTRMSQCSSFCQRSGVVSESVAEDHEN 120
Query: 121 ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAAD GIVAS
Sbjct: 121 ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADSGIVAS 162
BLAST of Carg25130 vs. NCBI nr
Match:
XP_023519070.1 (uncharacterized protein LOC111782536 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 256.5 bits (654), Expect = 1.3e-64
Identity = 132/162 (81.48%), Postives = 134/162 (82.72%), Query Frame = 0
Query: 1 MGAHLCSFRRSGVGRPFTPPS-------------------SAHGRREIEACIEKKEMKKE 60
MGAHLCSFRR GV RPFTP S GRRE+E IEKKEMKKE
Sbjct: 1 MGAHLCSFRRFGVSRPFTPASPGDGYAMCRRRRPQRRWREEREGRREMETSIEKKEMKKE 60
Query: 61 YMSLEELLLASPAAPSERAFGNGGHGGFKRKVHPTRMSQCSSFCQRSGVVSESVAEDHEN 120
YMSLEELLLASP APSERAFGNGGHGGFKRKVHPTRMSQCSSFC+RSGVVSESVAEDHEN
Sbjct: 61 YMSLEELLLASPGAPSERAFGNGGHGGFKRKVHPTRMSQCSSFCERSGVVSESVAEDHEN 120
Query: 121 ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS
Sbjct: 121 ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 162
BLAST of Carg25130 vs. NCBI nr
Match:
XP_022142601.1 (uncharacterized protein LOC111012677 [Momordica charantia])
HSP 1 Score: 160.6 bits (405), Expect = 9.9e-36
Identity = 97/175 (55.43%), Postives = 112/175 (64.00%), Query Frame = 0
Query: 1 MGAHLCSFRRSGVGRPFTPPSSAHGR-------------------REIEACIEKKEMKKE 60
MGA+LCSFR S V P T S GR RE EA IEK+E K+E
Sbjct: 1 MGANLCSFRSSCVRGPTTAAPSGDGRGISEWRRLQWWRREEIEVKREKEASIEKQETKRE 60
Query: 61 YMSLEELLLASPAAPSERAFGNGG------HGGFKRKVHPTRMSQCSSFCQRS-GVVSES 120
Y+SLEELLLASP SE+ FGNGG HGGFKRKVHPTR+ SS C+RS G V ES
Sbjct: 61 YLSLEELLLASPGPSSEQGFGNGGKFNVSRHGGFKRKVHPTRICNSSSICERSGGAVGES 120
Query: 121 VAEDHE------NICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
VA+ E +ICR ++GKL+KKVSFRLPEVS+VI+IYSPE A+AD VAS
Sbjct: 121 VADQDEFSGGSFSICRSESGKLKKKVSFRLPEVSEVIVIYSPEEGASADDANVAS 175
BLAST of Carg25130 vs. NCBI nr
Match:
XP_008458959.1 (PREDICTED: uncharacterized protein LOC103498217 isoform X3 [Cucumis melo])
HSP 1 Score: 139.8 bits (351), Expect = 1.8e-29
Identity = 92/175 (52.57%), Postives = 107/175 (61.14%), Query Frame = 0
Query: 1 MGAHLCSFRRSGVGRPFTPPSSAHG-------------------RREIEACIEKKEMKKE 60
MGA+LC+ R RP T +S G +RE+EA IEKKE KE
Sbjct: 37 MGANLCTIR-----RPATADASGDGYEICGWRRRQWWRRERNEVKRELEASIEKKE-TKE 96
Query: 61 YMSLEELLLASPAAPSERAFGNGG------HGGFKRKVHPTRMSQCSSFC-QRSGVVSES 120
+MSLEELLLASP APSER GN G HGGFKRKVHP R+ + SS C +RSG V ES
Sbjct: 97 FMSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGES 156
Query: 121 VAEDHEN------ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
VA+D + ICR ++GKL+KKVSFRLPEVSDVI+I S E D AD V S
Sbjct: 157 VAKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 205
BLAST of Carg25130 vs. ExPASy TrEMBL
Match:
A0A6J1CMN8 (uncharacterized protein LOC111012677 OS=Momordica charantia OX=3673 GN=LOC111012677 PE=4 SV=1)
HSP 1 Score: 160.6 bits (405), Expect = 4.8e-36
Identity = 97/175 (55.43%), Postives = 112/175 (64.00%), Query Frame = 0
Query: 1 MGAHLCSFRRSGVGRPFTPPSSAHGR-------------------REIEACIEKKEMKKE 60
MGA+LCSFR S V P T S GR RE EA IEK+E K+E
Sbjct: 1 MGANLCSFRSSCVRGPTTAAPSGDGRGISEWRRLQWWRREEIEVKREKEASIEKQETKRE 60
Query: 61 YMSLEELLLASPAAPSERAFGNGG------HGGFKRKVHPTRMSQCSSFCQRS-GVVSES 120
Y+SLEELLLASP SE+ FGNGG HGGFKRKVHPTR+ SS C+RS G V ES
Sbjct: 61 YLSLEELLLASPGPSSEQGFGNGGKFNVSRHGGFKRKVHPTRICNSSSICERSGGAVGES 120
Query: 121 VAEDHE------NICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
VA+ E +ICR ++GKL+KKVSFRLPEVS+VI+IYSPE A+AD VAS
Sbjct: 121 VADQDEFSGGSFSICRSESGKLKKKVSFRLPEVSEVIVIYSPEEGASADDANVAS 175
BLAST of Carg25130 vs. ExPASy TrEMBL
Match:
A0A5D3CKA0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001340 PE=4 SV=1)
HSP 1 Score: 139.8 bits (351), Expect = 8.8e-30
Identity = 92/175 (52.57%), Postives = 107/175 (61.14%), Query Frame = 0
Query: 1 MGAHLCSFRRSGVGRPFTPPSSAHG-------------------RREIEACIEKKEMKKE 60
MGA+LC+ R RP T +S G +RE+EA IEKKE KE
Sbjct: 1 MGANLCTIR-----RPATADASGDGYEICGWRRRQWWRRERNEVKRELEASIEKKE-TKE 60
Query: 61 YMSLEELLLASPAAPSERAFGNGG------HGGFKRKVHPTRMSQCSSFC-QRSGVVSES 120
+MSLEELLLASP APSER GN G HGGFKRKVHP R+ + SS C +RSG V ES
Sbjct: 61 FMSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGES 120
Query: 121 VAEDHEN------ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
VA+D + ICR ++GKL+KKVSFRLPEVSDVI+I S E D AD V S
Sbjct: 121 VAKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 169
BLAST of Carg25130 vs. ExPASy TrEMBL
Match:
A0A1S3CAA9 (uncharacterized protein LOC103498217 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498217 PE=4 SV=1)
HSP 1 Score: 139.8 bits (351), Expect = 8.8e-30
Identity = 92/175 (52.57%), Postives = 107/175 (61.14%), Query Frame = 0
Query: 1 MGAHLCSFRRSGVGRPFTPPSSAHG-------------------RREIEACIEKKEMKKE 60
MGA+LC+ R RP T +S G +RE+EA IEKKE KE
Sbjct: 37 MGANLCTIR-----RPATADASGDGYEICGWRRRQWWRRERNEVKRELEASIEKKE-TKE 96
Query: 61 YMSLEELLLASPAAPSERAFGNGG------HGGFKRKVHPTRMSQCSSFC-QRSGVVSES 120
+MSLEELLLASP APSER GN G HGGFKRKVHP R+ + SS C +RSG V ES
Sbjct: 97 FMSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGES 156
Query: 121 VAEDHEN------ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
VA+D + ICR ++GKL+KKVSFRLPEVSDVI+I S E D AD V S
Sbjct: 157 VAKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 205
BLAST of Carg25130 vs. ExPASy TrEMBL
Match:
A0A1S3C9M5 (uncharacterized protein LOC103498217 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498217 PE=4 SV=1)
HSP 1 Score: 137.9 bits (346), Expect = 3.3e-29
Identity = 92/180 (51.11%), Postives = 107/180 (59.44%), Query Frame = 0
Query: 1 MGAHLCSFRRSGVGRPFTPPSSAHG------------------------RREIEACIEKK 60
MGA+LC+ R RP T +S G +RE+EA IEKK
Sbjct: 37 MGANLCTIR-----RPATADASGDGLGFAGYEICGWRRRQWWRRERNEVKRELEASIEKK 96
Query: 61 EMKKEYMSLEELLLASPAAPSERAFGNGG------HGGFKRKVHPTRMSQCSSFC-QRSG 120
E KE+MSLEELLLASP APSER GN G HGGFKRKVHP R+ + SS C +RSG
Sbjct: 97 E-TKEFMSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSG 156
Query: 121 VVSESVAEDHEN------ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
V ESVA+D + ICR ++GKL+KKVSFRLPEVSDVI+I S E D AD V S
Sbjct: 157 FVGESVAKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 210
BLAST of Carg25130 vs. ExPASy TrEMBL
Match:
A0A5A7ULA6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G00430 PE=4 SV=1)
HSP 1 Score: 136.3 bits (342), Expect = 9.7e-29
Identity = 86/155 (55.48%), Postives = 101/155 (65.16%), Query Frame = 0
Query: 2 GAHLCSFRRSGVGRPFTPPSSAHGRREIEACIEKKEMKKEYMSLEELLLASPAAPSERAF 61
G +C +RR R + +RE+EA IEKKE KE+MSLEELLLASP APSER
Sbjct: 28 GYEICGWRR----RQWWRRERNEVKRELEASIEKKE-TKEFMSLEELLLASPGAPSERGE 87
Query: 62 GNGG------HGGFKRKVHPTRMSQCSSFC-QRSGVVSESVAEDHEN------ICRPQTG 121
GN G HGGFKRKVHP R+ + SS C +RSG V ESVA+D + ICR ++G
Sbjct: 88 GNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGESVAKDEYSSHSGFPICRRESG 147
Query: 122 KLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
KL+KKVSFRLPEVSDVI+I S E D AD V S
Sbjct: 148 KLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 177
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7019397.1 | 3.7e-75 | 100.00 | hypothetical protein SDJN02_18358, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6583758.1 | 1.6e-70 | 87.04 | hypothetical protein SDJN03_19690, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_023519070.1 | 1.3e-64 | 81.48 | uncharacterized protein LOC111782536 [Cucurbita pepo subsp. pepo] | [more] |
XP_022142601.1 | 9.9e-36 | 55.43 | uncharacterized protein LOC111012677 [Momordica charantia] | [more] |
XP_008458959.1 | 1.8e-29 | 52.57 | PREDICTED: uncharacterized protein LOC103498217 isoform X3 [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1CMN8 | 4.8e-36 | 55.43 | uncharacterized protein LOC111012677 OS=Momordica charantia OX=3673 GN=LOC111012... | [more] |
A0A5D3CKA0 | 8.8e-30 | 52.57 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3CAA9 | 8.8e-30 | 52.57 | uncharacterized protein LOC103498217 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
A0A1S3C9M5 | 3.3e-29 | 51.11 | uncharacterized protein LOC103498217 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
A0A5A7ULA6 | 9.7e-29 | 55.48 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |