Carg25130 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25130
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr13: 5497138 .. 5498173 (-)
RNA-Seq ExpressionCarg25130
SyntenyCarg25130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCCCATCTCTGCAGCTTTCGGCGCTCCGGTGTCGGTAGACCGTTCACGCCACCCTCCTCCGCTCACGGTAAAGCCACAAACGCCCTTTAGAATTTGAAACTTTGTCCATACCCTTCTTCCTATTGTTTTACTCGATCTCAGACATATGTTTTAACTTTTAAAAGTGAGATGATTTATGTGATGTAGATGTTAGGAATCACGATCCTCGTGATGGTATGATATTATCCACTTTAAGTATAAGCTCTCACACGAATGGAAGGAGTATTCTTTATTTATAAACCCAAGATCACTCTCTAAATTAGTCAATGTGGGACTTACACCATACAACAATAGATAGAGATGGTTTTCCATTAAAAAAAATTTAATTTTTTTTTCTTTATAGAATTTAGGTTAATGTTATTTTTAAATTTTTATAGGTATTTTTTAAATATGAAACTACCCATTTTAATTTTAATTTTTTTTTTAAAGTTGGAAGATTATTAAAAATTTGAGGGTATTTTTTAAAATGGGTTTAAATCCAAAACTAAAAGTAAAAAAGTATTTAGGCTAATACAAAATTTAAGAATATTGTAGTTAATTTAGGTATTTTGGTTAATTTGGCGTGGATTTTGCAGGGTATGCAATGTGCCGGAGGAGACGGCCGCAACGGCGGTGGAGAGAGGAAAGAGAAGGGCGGAGAGAGATAGAGGCATGTATTGAGAAGAAAGAAATGAAGAAGGAGTATATGTCTTTGGAGGAGTTGCTGTTGGCTTCTCCGGCAGCGCCATCGGAGCGAGCTTTTGGAAATGGCGGCCATGGCGGATTCAAGAGAAAAGTGCATCCGACCAGGATGTCGCAGTGTTCCTCGTTTTGTCAGAGATCCGGTGTGGTTAGTGAATCAGTTGCAGAGGATCATGAGAACATTTGCAGACCCCAAACTGGTAAATTGAGGAAGAAAGTAAGCTTTAGGCTGCCGGAGGTGTCGGACGTTATTTTAATTTACTCGCCGGAGGGTGATGCCGCGGCCGACGGCGGGATTGTTGCTTCCTAG

mRNA sequence

ATGGGAGCCCATCTCTGCAGCTTTCGGCGCTCCGGTGTCGGTAGACCGTTCACGCCACCCTCCTCCGCTCACGGGCGGAGAGAGATAGAGGCATGTATTGAGAAGAAAGAAATGAAGAAGGAGTATATGTCTTTGGAGGAGTTGCTGTTGGCTTCTCCGGCAGCGCCATCGGAGCGAGCTTTTGGAAATGGCGGCCATGGCGGATTCAAGAGAAAAGTGCATCCGACCAGGATGTCGCAGTGTTCCTCGTTTTGTCAGAGATCCGGTGTGGTTAGTGAATCAGTTGCAGAGGATCATGAGAACATTTGCAGACCCCAAACTGGTAAATTGAGGAAGAAAGTAAGCTTTAGGCTGCCGGAGGTGTCGGACGTTATTTTAATTTACTCGCCGGAGGGTGATGCCGCGGCCGACGGCGGGATTGTTGCTTCCTAG

Coding sequence (CDS)

ATGGGAGCCCATCTCTGCAGCTTTCGGCGCTCCGGTGTCGGTAGACCGTTCACGCCACCCTCCTCCGCTCACGGGCGGAGAGAGATAGAGGCATGTATTGAGAAGAAAGAAATGAAGAAGGAGTATATGTCTTTGGAGGAGTTGCTGTTGGCTTCTCCGGCAGCGCCATCGGAGCGAGCTTTTGGAAATGGCGGCCATGGCGGATTCAAGAGAAAAGTGCATCCGACCAGGATGTCGCAGTGTTCCTCGTTTTGTCAGAGATCCGGTGTGGTTAGTGAATCAGTTGCAGAGGATCATGAGAACATTTGCAGACCCCAAACTGGTAAATTGAGGAAGAAAGTAAGCTTTAGGCTGCCGGAGGTGTCGGACGTTATTTTAATTTACTCGCCGGAGGGTGATGCCGCGGCCGACGGCGGGATTGTTGCTTCCTAG

Protein sequence

MGAHLCSFRRSGVGRPFTPPSSAHGRREIEACIEKKEMKKEYMSLEELLLASPAAPSERAFGNGGHGGFKRKVHPTRMSQCSSFCQRSGVVSESVAEDHENICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS
Homology
BLAST of Carg25130 vs. NCBI nr
Match: KAG7019397.1 (hypothetical protein SDJN02_18358, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 291.6 bits (745), Expect = 3.7e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0

Query: 1   MGAHLCSFRRSGVGRPFTPPSSAHGRREIEACIEKKEMKKEYMSLEELLLASPAAPSERA 60
           MGAHLCSFRRSGVGRPFTPPSSAHGRREIEACIEKKEMKKEYMSLEELLLASPAAPSERA
Sbjct: 1   MGAHLCSFRRSGVGRPFTPPSSAHGRREIEACIEKKEMKKEYMSLEELLLASPAAPSERA 60

Query: 61  FGNGGHGGFKRKVHPTRMSQCSSFCQRSGVVSESVAEDHENICRPQTGKLRKKVSFRLPE 120
           FGNGGHGGFKRKVHPTRMSQCSSFCQRSGVVSESVAEDHENICRPQTGKLRKKVSFRLPE
Sbjct: 61  FGNGGHGGFKRKVHPTRMSQCSSFCQRSGVVSESVAEDHENICRPQTGKLRKKVSFRLPE 120

Query: 121 VSDVILIYSPEGDAAADGGIVAS 144
           VSDVILIYSPEGDAAADGGIVAS
Sbjct: 121 VSDVILIYSPEGDAAADGGIVAS 143

BLAST of Carg25130 vs. NCBI nr
Match: KAG6583758.1 (hypothetical protein SDJN03_19690, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 276.2 bits (705), Expect = 1.6e-70
Identity = 141/162 (87.04%), Postives = 141/162 (87.04%), Query Frame = 0

Query: 1   MGAHLCSFRRSGVGRPFTPPSSAH-------------------GRREIEACIEKKEMKKE 60
           MGAHLCSFRRSGVGRPFTPPSSAH                   GRREIEACIEKKEMKKE
Sbjct: 1   MGAHLCSFRRSGVGRPFTPPSSAHGYAMCRRRRPQRRWREEREGRREIEACIEKKEMKKE 60

Query: 61  YMSLEELLLASPAAPSERAFGNGGHGGFKRKVHPTRMSQCSSFCQRSGVVSESVAEDHEN 120
           YMSLEELLLASP APSERAFGNGGHGGFKRKVHPTRMSQCSSFCQRSGVVSESVAEDHEN
Sbjct: 61  YMSLEELLLASPGAPSERAFGNGGHGGFKRKVHPTRMSQCSSFCQRSGVVSESVAEDHEN 120

Query: 121 ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
           ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAAD GIVAS
Sbjct: 121 ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADSGIVAS 162

BLAST of Carg25130 vs. NCBI nr
Match: XP_023519070.1 (uncharacterized protein LOC111782536 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.5 bits (654), Expect = 1.3e-64
Identity = 132/162 (81.48%), Postives = 134/162 (82.72%), Query Frame = 0

Query: 1   MGAHLCSFRRSGVGRPFTPPS-------------------SAHGRREIEACIEKKEMKKE 60
           MGAHLCSFRR GV RPFTP S                      GRRE+E  IEKKEMKKE
Sbjct: 1   MGAHLCSFRRFGVSRPFTPASPGDGYAMCRRRRPQRRWREEREGRREMETSIEKKEMKKE 60

Query: 61  YMSLEELLLASPAAPSERAFGNGGHGGFKRKVHPTRMSQCSSFCQRSGVVSESVAEDHEN 120
           YMSLEELLLASP APSERAFGNGGHGGFKRKVHPTRMSQCSSFC+RSGVVSESVAEDHEN
Sbjct: 61  YMSLEELLLASPGAPSERAFGNGGHGGFKRKVHPTRMSQCSSFCERSGVVSESVAEDHEN 120

Query: 121 ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
           ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS
Sbjct: 121 ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 162

BLAST of Carg25130 vs. NCBI nr
Match: XP_022142601.1 (uncharacterized protein LOC111012677 [Momordica charantia])

HSP 1 Score: 160.6 bits (405), Expect = 9.9e-36
Identity = 97/175 (55.43%), Postives = 112/175 (64.00%), Query Frame = 0

Query: 1   MGAHLCSFRRSGVGRPFTPPSSAHGR-------------------REIEACIEKKEMKKE 60
           MGA+LCSFR S V  P T   S  GR                   RE EA IEK+E K+E
Sbjct: 1   MGANLCSFRSSCVRGPTTAAPSGDGRGISEWRRLQWWRREEIEVKREKEASIEKQETKRE 60

Query: 61  YMSLEELLLASPAAPSERAFGNGG------HGGFKRKVHPTRMSQCSSFCQRS-GVVSES 120
           Y+SLEELLLASP   SE+ FGNGG      HGGFKRKVHPTR+   SS C+RS G V ES
Sbjct: 61  YLSLEELLLASPGPSSEQGFGNGGKFNVSRHGGFKRKVHPTRICNSSSICERSGGAVGES 120

Query: 121 VAEDHE------NICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
           VA+  E      +ICR ++GKL+KKVSFRLPEVS+VI+IYSPE  A+AD   VAS
Sbjct: 121 VADQDEFSGGSFSICRSESGKLKKKVSFRLPEVSEVIVIYSPEEGASADDANVAS 175

BLAST of Carg25130 vs. NCBI nr
Match: XP_008458959.1 (PREDICTED: uncharacterized protein LOC103498217 isoform X3 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 1.8e-29
Identity = 92/175 (52.57%), Postives = 107/175 (61.14%), Query Frame = 0

Query: 1   MGAHLCSFRRSGVGRPFTPPSSAHG-------------------RREIEACIEKKEMKKE 60
           MGA+LC+ R     RP T  +S  G                   +RE+EA IEKKE  KE
Sbjct: 37  MGANLCTIR-----RPATADASGDGYEICGWRRRQWWRRERNEVKRELEASIEKKE-TKE 96

Query: 61  YMSLEELLLASPAAPSERAFGNGG------HGGFKRKVHPTRMSQCSSFC-QRSGVVSES 120
           +MSLEELLLASP APSER  GN G      HGGFKRKVHP R+ + SS C +RSG V ES
Sbjct: 97  FMSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGES 156

Query: 121 VAEDHEN------ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
           VA+D  +      ICR ++GKL+KKVSFRLPEVSDVI+I S E D  AD   V S
Sbjct: 157 VAKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 205

BLAST of Carg25130 vs. ExPASy TrEMBL
Match: A0A6J1CMN8 (uncharacterized protein LOC111012677 OS=Momordica charantia OX=3673 GN=LOC111012677 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.8e-36
Identity = 97/175 (55.43%), Postives = 112/175 (64.00%), Query Frame = 0

Query: 1   MGAHLCSFRRSGVGRPFTPPSSAHGR-------------------REIEACIEKKEMKKE 60
           MGA+LCSFR S V  P T   S  GR                   RE EA IEK+E K+E
Sbjct: 1   MGANLCSFRSSCVRGPTTAAPSGDGRGISEWRRLQWWRREEIEVKREKEASIEKQETKRE 60

Query: 61  YMSLEELLLASPAAPSERAFGNGG------HGGFKRKVHPTRMSQCSSFCQRS-GVVSES 120
           Y+SLEELLLASP   SE+ FGNGG      HGGFKRKVHPTR+   SS C+RS G V ES
Sbjct: 61  YLSLEELLLASPGPSSEQGFGNGGKFNVSRHGGFKRKVHPTRICNSSSICERSGGAVGES 120

Query: 121 VAEDHE------NICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
           VA+  E      +ICR ++GKL+KKVSFRLPEVS+VI+IYSPE  A+AD   VAS
Sbjct: 121 VADQDEFSGGSFSICRSESGKLKKKVSFRLPEVSEVIVIYSPEEGASADDANVAS 175

BLAST of Carg25130 vs. ExPASy TrEMBL
Match: A0A5D3CKA0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001340 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 8.8e-30
Identity = 92/175 (52.57%), Postives = 107/175 (61.14%), Query Frame = 0

Query: 1   MGAHLCSFRRSGVGRPFTPPSSAHG-------------------RREIEACIEKKEMKKE 60
           MGA+LC+ R     RP T  +S  G                   +RE+EA IEKKE  KE
Sbjct: 1   MGANLCTIR-----RPATADASGDGYEICGWRRRQWWRRERNEVKRELEASIEKKE-TKE 60

Query: 61  YMSLEELLLASPAAPSERAFGNGG------HGGFKRKVHPTRMSQCSSFC-QRSGVVSES 120
           +MSLEELLLASP APSER  GN G      HGGFKRKVHP R+ + SS C +RSG V ES
Sbjct: 61  FMSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGES 120

Query: 121 VAEDHEN------ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
           VA+D  +      ICR ++GKL+KKVSFRLPEVSDVI+I S E D  AD   V S
Sbjct: 121 VAKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 169

BLAST of Carg25130 vs. ExPASy TrEMBL
Match: A0A1S3CAA9 (uncharacterized protein LOC103498217 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498217 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 8.8e-30
Identity = 92/175 (52.57%), Postives = 107/175 (61.14%), Query Frame = 0

Query: 1   MGAHLCSFRRSGVGRPFTPPSSAHG-------------------RREIEACIEKKEMKKE 60
           MGA+LC+ R     RP T  +S  G                   +RE+EA IEKKE  KE
Sbjct: 37  MGANLCTIR-----RPATADASGDGYEICGWRRRQWWRRERNEVKRELEASIEKKE-TKE 96

Query: 61  YMSLEELLLASPAAPSERAFGNGG------HGGFKRKVHPTRMSQCSSFC-QRSGVVSES 120
           +MSLEELLLASP APSER  GN G      HGGFKRKVHP R+ + SS C +RSG V ES
Sbjct: 97  FMSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGES 156

Query: 121 VAEDHEN------ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
           VA+D  +      ICR ++GKL+KKVSFRLPEVSDVI+I S E D  AD   V S
Sbjct: 157 VAKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 205

BLAST of Carg25130 vs. ExPASy TrEMBL
Match: A0A1S3C9M5 (uncharacterized protein LOC103498217 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498217 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.3e-29
Identity = 92/180 (51.11%), Postives = 107/180 (59.44%), Query Frame = 0

Query: 1   MGAHLCSFRRSGVGRPFTPPSSAHG------------------------RREIEACIEKK 60
           MGA+LC+ R     RP T  +S  G                        +RE+EA IEKK
Sbjct: 37  MGANLCTIR-----RPATADASGDGLGFAGYEICGWRRRQWWRRERNEVKRELEASIEKK 96

Query: 61  EMKKEYMSLEELLLASPAAPSERAFGNGG------HGGFKRKVHPTRMSQCSSFC-QRSG 120
           E  KE+MSLEELLLASP APSER  GN G      HGGFKRKVHP R+ + SS C +RSG
Sbjct: 97  E-TKEFMSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSG 156

Query: 121 VVSESVAEDHEN------ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
            V ESVA+D  +      ICR ++GKL+KKVSFRLPEVSDVI+I S E D  AD   V S
Sbjct: 157 FVGESVAKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 210

BLAST of Carg25130 vs. ExPASy TrEMBL
Match: A0A5A7ULA6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G00430 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 9.7e-29
Identity = 86/155 (55.48%), Postives = 101/155 (65.16%), Query Frame = 0

Query: 2   GAHLCSFRRSGVGRPFTPPSSAHGRREIEACIEKKEMKKEYMSLEELLLASPAAPSERAF 61
           G  +C +RR    R +        +RE+EA IEKKE  KE+MSLEELLLASP APSER  
Sbjct: 28  GYEICGWRR----RQWWRRERNEVKRELEASIEKKE-TKEFMSLEELLLASPGAPSERGE 87

Query: 62  GNGG------HGGFKRKVHPTRMSQCSSFC-QRSGVVSESVAEDHEN------ICRPQTG 121
           GN G      HGGFKRKVHP R+ + SS C +RSG V ESVA+D  +      ICR ++G
Sbjct: 88  GNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGESVAKDEYSSHSGFPICRRESG 147

Query: 122 KLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
           KL+KKVSFRLPEVSDVI+I S E D  AD   V S
Sbjct: 148 KLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 177

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7019397.13.7e-75100.00hypothetical protein SDJN02_18358, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6583758.11.6e-7087.04hypothetical protein SDJN03_19690, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023519070.11.3e-6481.48uncharacterized protein LOC111782536 [Cucurbita pepo subsp. pepo][more]
XP_022142601.19.9e-3655.43uncharacterized protein LOC111012677 [Momordica charantia][more]
XP_008458959.11.8e-2952.57PREDICTED: uncharacterized protein LOC103498217 isoform X3 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CMN84.8e-3655.43uncharacterized protein LOC111012677 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A5D3CKA08.8e-3052.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CAA98.8e-3052.57uncharacterized protein LOC103498217 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3C9M53.3e-2951.11uncharacterized protein LOC103498217 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5A7ULA69.7e-2955.48Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25130-RACarg25130-RAmRNA