Carg25021 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25021
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	serine/arginine-rich splicing factor SR30-like
Location	Carg_Chr11: 6341290 .. 6346094 (+)
RNA-Seq Expression	Carg25021
Synteny	Carg25021

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCGATCTTTCCAGAACTTCATAAATCTTCGAGGATCTGCTTCTCCATTTTCTATCTAGCCCTAAAATCACCAGGTATAGATTTCTCTCTTCTAATTTTCATTTTTTTTCGAATTGTTGATTTTGATTCTTGATTGAAGAAAGAACAAGAAAGAAAGCAAAAAGATCTCGTAATTTCGCGTGTTGATTTTCTTTTTCATTTCGATTTTGTGTTAATTTTGATAGCCATGGTGATGATTGATGACTATGGTTATGGCTCAATAGGTTATTCTCCTCCATCCTCCTTTTAATCTATGCGATGTTGTTTCATTTTATGATGCAATTTTTATTAACATTTATTCTTATCCTTTTCAAGATTTTGTTTTTATTGTACACGAGAAACGAGACAATGAGCAGCAGAAATAGCCGCACCATCTATGTTGGTAACCTTCCTGGAGATATTCGTTTGAGAGAAGTAGAAGATCTGTTCTACAAGGTTTGATTTCCTCAAATAATTATCTTTATATAATCCTACTTGTTTGGGTGAAATTTTAGTGCTTAATAGTTTATTGAGATTTTTTTTTTTAAATTTGTTTTTTTAAGTGTTTTTGCGTCAGGTCTTTTTCCGCGAATTAATTCTATAGTTAATGATTGGCAATTATGGACCCATTGTCGACATTGATTTGAAGATTCCCCCACGCCCACCGGGCTATGCTTTTGTGGAGGTGAGGTTAAATCTTGACGCTTTTGGAACCCAGTCTCTCTGGCCGGAATATTTTTCATCGGAGTCCCTTCAAATTGGCGTCTTATCATTTTGGGTGTTTAACAAATTTAAATAGTTGCACTGAGCTGTTGGTGATCCTTAATGGAAAACCTTTATCGTCTTCTTATTTTTTCAGTTCGAAGATATTCGTGATGCTGAAGATGCAATTTATGGCCGAGATGGATACAAGTTTGATGGATGTCGTTTACGGGTAATTTGCAACACACGCCCGCTGAAATTATTCTCCAATGATGTCTTATCCACGTATCAAAATATGATGTTGCGATGCTTGTTTTGTAGGTGGAATTTGCGCATGGTGGAAGGGGACATTCCTCTTCAATAGATCATTATAGTCGTAGTGGGAGTAGCCGTGGTGGTGTTTCTCGGCGAACTGACTATCGTGGTATGTATTTTATTTACTTTTACTGTCAAAATGTGATGATACTGTTGTCATGATATTTTGTTTGTACAGTTTTGGTCACTGGATTACCTCCTTCTGCTTCATGGCAAGACCTGAAGGTAAGCACAATGTTTCAATTTCAGGAAATAACCTACTATTATGCTAAGTTCTCCATTTCTTTGTTCGATCATATCCACCTTGTTAAATAGAAGCAAAATACATGGCTTCACTCTCTTCTACTAATTGGTAGTTTGTTTTTTGAATTTAGGATCACATGCGTCGTGCTGGTGATGTCTGCTTCTCTGAAGTTTTCCGTGATCGTGGTGGTATGTCATGTTGACTTACTTGTCCTCCTATTCTCTCTAACATATGGCTCTGTGCAAGTTTCATTTGAACTCGTGGTATTATTATTATTTTTCTTTTGCTGGAATGGAATGCACGTTTAACCTTTAGAAATCCTCATGGATTGATAATAGTATTCCAATAGCAACCTTCATTTTTTCTTTCTCAAGAAAAGATCATTCTTATTTCTAAACACCTTCCAGCCTTGATTAAGATGAGGTCAGTACGGGGTGTCCTGATTGGTTCTGTCTCAAAAAAAAAAAAAAAAAAAAACAAAGGAAAAGAAAAAGGAAAAAAGAAAAAAGGGAATGAAATCTGGAATAACCACTCCACAACTAGTTTAGTTGTAAGGTCGATTGATCTGAATTCCACGACTCTCTTAAGTACATGGGGCCACAACTAAAAGTTCTTTTTTTTCATATTTGGATCAATAATGTCATAAAAATTACCGAACACGTTACTCAAATCTCGTGGTCAATTCTGGATTCTCTTGAAACTGCTTTAGCATTTTGGCCATTCCATGAAGTTACTGATATCCAATTTTTATTTTTACCTCCTGCTATTGAGATGGTCAAAATAGAAATTGGACAACAATGACTTGATGGATGGCGTAACTTTTATTTTTACTTCCTGCTACTGAGATGGTAGATCCTTTTTTCATTATTTATTTATTTTTATCAATTATATTTAATGAGATCTATAATTGTGTTTTGTTAAAAAAGGAAGTCTTCAACACTTCATAAGGGATTTGTTTCTTGAAATATGTGCAGGGATGGCAGGAATAGTAGATTATACAAACTATGATGACATGAAATATGCTGTAAGTTGCTTTTTAGACGGTGTTACTTGTAATGTCTTTTCTGGAAGATTTGCTTCGTGTTTAATGGTGTCAGTCTTTGTTTTATATTCTGCGTTTGTGTGGTAATATATGTTATTTATGTTTGTCATTTGTAATCTGGCTTATTTCTGCAGATACGGAAACTTGATGATTCTGAATTTCGAAATGCCTTTTCTCGTGCGTATGTACGGGTATGTGGATTGGAAAGCTTATTTATTGTGCTAAATTCTGTTCTGTTACTAATAATTTGTGTAACAATACACACAGGTGAAGGAGTATGACTCTAGGCGTAGCTATTCCAGAAGTCCTTCCCGTGATTCTAGACGAAGTGATTATTCTAGAAGTCCTAGTCGTAGTCCTTATGGGGAAAGAGGTCGGAGCCGGAGCAGAAGCCGGAGTCGAAGTAGAAGTCAATCTCGAAGCCTTAGACGTAGTCATAGCCATAGTCATAGTGGCAGGAGCACAAGGTATGTTTTGGTTTGCTTGTGAAGTAAAGATTAAAATGATGAATCATGAAAAATTAAAATGGCACAATATTTTGTTTTGCAGTCTTTCTCCAAGGCTGAAGCACTCTCGTCGGTCGCCGTCAATTTCTGAACAATCCCAGTCAAAGTCTCTTTCAAGGTTTGCGGAATTCCCTTATCCTTATGATTTAATCTTCCTTTCCTAAGAATAGTATCTGAATTCACTGTTGCTTTGGTGCTGCTATTCTTTTATAAAATGGATGTCTGGTCTAGGCTTGTGTTTTCCCAGTGCTGGTTCCCATCTCTCTTTAATCTGGACAGCTTTATATGTTGACATCTCTACAAATATGTTAAAGTTGTGCTTGCTTACTGCCTGTTGTATGGGACCACCGATTTGTGGTCATCAAGTCTCTTCATGATGTAGACAAATATAAGGGCATTTGTTGTTTCTTGTTGGAAAATGTGTGGTGGCACTTTCTGTTTTTCATTTTTTTCTTGAAATGTTCTCACAATCAGAAATAGTAAGTGTTCTTAAGTCACTTAAGTCATCTCTTCTTGAGTAAATAAGTGGGAGAAGGAAATAAGAAATGGAAGGAACACATAAAAGCAAAGATAGGTGGCAACCAATGGGGTTCAGGGGAATCTGCTTGTAGACATTGTTTTGATGATGCAAGGATTCTTGAATTTCATACACTTTGGTCGCTATTTTTTCCCCAAAACATTTTTCCTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAATGTTTTTACTTTTCCTTTGGGTATGCTCGGGGTTAACAAAGCAGAAGCTTATTGGTTTGGGCAGTCATCATTGTTTGTTTATGTTTTTTGCTAGATATGGGCTTTTGCGGAATAATTGAGACTTGTTAGGGGCTTGAGGGATGTGGTGCTCAATGTGCTTCTTTCAACTCTTTGGTTGTTGAGGTAATACAGTTTTGTTGATGAGCACCCAGACACATCCTCGATGATAATGATTCTTTCCCTTCTCTTCTATGCATGTTTTCCCAGTTACTGGCAACACAATGGAAAAGCTCGTTGAGTTGCAATACTATTGTTTGCTCCGTTGAGAATTAGTTCTCTGTACATCGATTCTACATTAGTTTGGGTTATATAGTTCGAATGTTCTTCCCTCTCACTGTTTTGCTGCCTGTGTTTATTTGCTTTAATTCTTACTTATAACCAACTCTTGATGGGCTGGGATGAAAGAATTGAGCTTGGAAACCAGTCTTCTATGTATTTATTGTTATTGAGCTTGGAAACCAATTCTCTTTGGATACTCTTTAAGATTCTTTTGGTTATTGATTCCAGGTCAAGGTCGAGATCCAGATCAGGATCACCAGTTTCCTCTGTAAGCAGCCTTCCCCTTTCCTGGATTTCCTTGTGTGTATGGATAAGGTTTCACTTCCGGTTCTCATTGTTCCGTTTATTGCTGCAGCGTCGTGAGAGGAAAATTCAGAATCGGAGCAGATCTCGTTCCAAGTCCAGAAGCCTGTCCCGATCTCTTTCACCTGATGTAATATCCTGATTCAGAACATACAATATGGTCTATTCTAAACTCAGATATAGCATCTGTTCCCGAAGTTTTGTATTCATGATTTGATTTTTGACTTGAACAGGGGAGATCTGATCGAAGCCGAAGCCGAAGCCGAAGCCAATCTGTTGATTCCAGGGACCGATATTCAGAATAAGATCATATTGTTATTGAGATGATGGGGGGATTGTAAAGCGTAGAAGAGAGATTAGCGTTGGGTATATTTGGAGGGGGCTGTGGATTTAATGTGTGTGTGTGTGTGTGTTATGGGTGACACTAGTATTTGACCCTACCCATGTTTCAGTGTATTTTGTACGTTGGTACTTGCTTGGTTATGTTTCACTTTAGAATTACCAAATGAATTTGTGGGGTCAAAAATTTAATAAACAATTTACTTCCTTATTGTCCTTTTTTAATTCCTCAAATGAATGGATCATCTTTGGGACCTTACAATGAAGGGTCCATA

mRNA sequence

TTTCGATCTTTCCAGAACTTCATAAATCTTCGAGGATCTGCTTCTCCATTTTCTATCTAGCCCTAAAATCACCAGCCATGGTGATGATTGATGACTATGGTTATGGCTCAATAGATTTTGTTTTTATTGTACACGAGAAACGAGACAATGAGCAGCAGAAATAGCCGCACCATCTATGTTGGTAACCTTCCTGGAGATATTCGTTTGAGAGAAGTAGAAGATCTGTTCTACAAGTTAATGATTGGCAATTATGGACCCATTGTCGACATTGATTTGAAGATTCCCCCACGCCCACCGGGCTATGCTTTTGTGGAGGTGAGGTTAAATCTTGACGCTTTTGGAACCCAGTCTCTCTGGCCGGAATATTTTTCATCGGAGTCCCTTCAAATTGGCGTCTTATCATTTTGGTTCGAAGATATTCGTGATGCTGAAGATGCAATTTATGGCCGAGATGGATACAAGTTTGATGGATGTCGTTTACGGGTGGAATTTGCGCATGGTGGAAGGGGACATTCCTCTTCAATAGATCATTATAGTCGTAGTGGGAGTAGCCGTGGTGGTGTTTCTCGGCGAACTGACTATCGTGTTTTGGTCACTGGATTACCTCCTTCTGCTTCATGGCAAGACCTGAAGGATCACATGCGTCGTGCTGGTGATGTCTGCTTCTCTGAAGTTTTCCGTGATCGTGGTGGGATGGCAGGAATAGTAGATTATACAAACTATGATGACATGAAATATGCTATACGGAAACTTGATGATTCTGAATTTCGAAATGCCTTTTCTCGTGCGTATGTACGGGTGAAGGAGTATGACTCTAGGCGTAGCTATTCCAGAAGTCCTTCCCGTGATTCTAGACGAAGTGATTATTCTAGAAGTCCTAGTCGTAGTCCTTATGGGGAAAGAGGTCGGAGCCGGAGCAGAAGCCGGAGTCGAAGTAGAAGTCAATCTCGAAGCCTTAGACGTAGTCATAGCCATAGTCATAGTGGCAGGAGCACAAGTCTTTCTCCAAGGCTGAAGCACTCTCGTCGGTCGCCGTCAATTTCTGAACAATCCCAGTCAAAGTCTCTTTCAAGGTCAAGGTCGAGATCCAGATCAGGATCACCAGTTTCCTCTCGTCGTGAGAGGAAAATTCAGAATCGGAGCAGATCTCGTTCCAAGTCCAGAAGCCTGTCCCGATCTCTTTCACCTGATGGGAGATCTGATCGAAGCCGAAGCCGAAGCCGAAGCCAATCTGTTGATTCCAGGGACCGATATTCAGAATAAGATCATATTGTTATTGAGATGATGGGGGGATTGTAAAGCGTAGAAGAGAGATTAGCGTTGGGTATATTTGGAGGGGGCTGTGGATTTAATGTGTGTGTGTGTGTGTGTTATGGGTGACACTAGTATTTGACCCTACCCATGTTTCAGTGTATTTTGTACGTTGGTACTTGCTTGGTTATGTTTCACTTTAGAATTACCAAATGAATTTGTGGGGTCAAAAATTTAATAAACAATTTACTTCCTTATTGTCCTTTTTTAATTCCTCAAATGAATGGATCATCTTTGGGACCTTACAATGAAGGGTCCATA

Coding sequence (CDS)

ATGAGCAGCAGAAATAGCCGCACCATCTATGTTGGTAACCTTCCTGGAGATATTCGTTTGAGAGAAGTAGAAGATCTGTTCTACAAGTTAATGATTGGCAATTATGGACCCATTGTCGACATTGATTTGAAGATTCCCCCACGCCCACCGGGCTATGCTTTTGTGGAGGTGAGGTTAAATCTTGACGCTTTTGGAACCCAGTCTCTCTGGCCGGAATATTTTTCATCGGAGTCCCTTCAAATTGGCGTCTTATCATTTTGGTTCGAAGATATTCGTGATGCTGAAGATGCAATTTATGGCCGAGATGGATACAAGTTTGATGGATGTCGTTTACGGGTGGAATTTGCGCATGGTGGAAGGGGACATTCCTCTTCAATAGATCATTATAGTCGTAGTGGGAGTAGCCGTGGTGGTGTTTCTCGGCGAACTGACTATCGTGTTTTGGTCACTGGATTACCTCCTTCTGCTTCATGGCAAGACCTGAAGGATCACATGCGTCGTGCTGGTGATGTCTGCTTCTCTGAAGTTTTCCGTGATCGTGGTGGGATGGCAGGAATAGTAGATTATACAAACTATGATGACATGAAATATGCTATACGGAAACTTGATGATTCTGAATTTCGAAATGCCTTTTCTCGTGCGTATGTACGGGTGAAGGAGTATGACTCTAGGCGTAGCTATTCCAGAAGTCCTTCCCGTGATTCTAGACGAAGTGATTATTCTAGAAGTCCTAGTCGTAGTCCTTATGGGGAAAGAGGTCGGAGCCGGAGCAGAAGCCGGAGTCGAAGTAGAAGTCAATCTCGAAGCCTTAGACGTAGTCATAGCCATAGTCATAGTGGCAGGAGCACAAGTCTTTCTCCAAGGCTGAAGCACTCTCGTCGGTCGCCGTCAATTTCTGAACAATCCCAGTCAAAGTCTCTTTCAAGGTCAAGGTCGAGATCCAGATCAGGATCACCAGTTTCCTCTCGTCGTGAGAGGAAAATTCAGAATCGGAGCAGATCTCGTTCCAAGTCCAGAAGCCTGTCCCGATCTCTTTCACCTGATGGGAGATCTGATCGAAGCCGAAGCCGAAGCCGAAGCCAATCTGTTGATTCCAGGGACCGATATTCAGAATAA

Protein sequence

MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLNLDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGRGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSRSRSKSRSLSRSLSPDGRSDRSRSRSRSQSVDSRDRYSE

Homology

[Close]

BLAST of Carg25021 vs. NCBI nr
Match: KAG7022321.1 (Serine/arginine-rich splicing factor SR30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 688.0 bits (1774), Expect = 4.6e-194
Identity = 371/371 (100.00%), Postives = 371/371 (100.00%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN 60

Query: 61  LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120
           LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR
Sbjct: 61  LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120

Query: 121 GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR 180
           GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR
Sbjct: 121 GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR 180

Query: 181 GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY 240
           GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY
Sbjct: 181 GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY 240

Query: 241 SRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSPSISE 300
           SRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSPSISE
Sbjct: 241 SRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSPSISE 300

Query: 301 QSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSRSRSKSRSLSRSLSPDGRSDRSRSRSRS 360
           QSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSRSRSKSRSLSRSLSPDGRSDRSRSRSRS
Sbjct: 301 QSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSRSRSKSRSLSRSLSPDGRSDRSRSRSRS 360

Query: 361 QSVDSRDRYSE 372
           QSVDSRDRYSE
Sbjct: 361 QSVDSRDRYSE 371

[Close]

BLAST of Carg25021 vs. NCBI nr
Match: KAG6588492.1 (Serine/arginine-rich splicing factor SR30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 591.3 bits (1523), Expect = 5.9e-165
Identity = 335/371 (90.30%), Postives = 335/371 (90.30%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYK     YGPIVDIDLKIPPRPPGYAFVE    
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK-----YGPIVDIDLKIPPRPPGYAFVE---- 60

Query: 61  LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120
                                      FEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR
Sbjct: 61  ---------------------------FEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120

Query: 121 GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR 180
           GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR
Sbjct: 121 GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR 180

Query: 181 GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY 240
           GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY
Sbjct: 181 GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY 240

Query: 241 SRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSPSISE 300
           SRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSPSISE
Sbjct: 241 SRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSPSISE 300

Query: 301 QSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSRSRSKSRSLSRSLSPDGRSDRSRSRSRS 360
           QSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSRSRSKSRSLSRSLSPDGRSDRSRSRSRS
Sbjct: 301 QSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSRSRSKSRSLSRSLSPDGRSDRSRSRSRS 335

Query: 361 QSVDSRDRYSE 372
           QSVDSRDRYSE
Sbjct: 361 QSVDSRDRYSE 335

[Close]

BLAST of Carg25021 vs. NCBI nr
Match: XP_022928780.1 (serine/arginine-rich splicing factor SR30-like [Cucurbita moschata] >XP_022928787.1 serine/arginine-rich splicing factor SR30-like [Cucurbita moschata])

HSP 1 Score: 584.7 bits (1506), Expect = 5.5e-163
Identity = 331/371 (89.22%), Postives = 334/371 (90.03%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYK     YGPIVDIDLKIPPRPPGYAFVE    
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK-----YGPIVDIDLKIPPRPPGYAFVE---- 60

Query: 61  LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120
                                      FEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR
Sbjct: 61  ---------------------------FEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120

Query: 121 GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR 180
           GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR
Sbjct: 121 GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR 180

Query: 181 GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY 240
           GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY
Sbjct: 181 GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY 240

Query: 241 SRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSPSISE 300
           SRSPSRSP+GERGRS+SRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSPSISE
Sbjct: 241 SRSPSRSPHGERGRSQSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSPSISE 300

Query: 301 QSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSRSRSKSRSLSRSLSPDGRSDRSRSRSRS 360
           QSQSKSLSRSRSRSRSGSPVSSRRERK QNRSRSRSKSRSLSRSLSPDGRSDRSRSRSRS
Sbjct: 301 QSQSKSLSRSRSRSRSGSPVSSRRERKFQNRSRSRSKSRSLSRSLSPDGRSDRSRSRSRS 335

Query: 361 QSVDSRDRYSE 372
           +SVDSRDRYSE
Sbjct: 361 RSVDSRDRYSE 335

[Close]

BLAST of Carg25021 vs. NCBI nr
Match: XP_022969758.1 (serine/arginine-rich splicing factor SR30-like [Cucurbita maxima] >XP_022969766.1 serine/arginine-rich splicing factor SR30-like [Cucurbita maxima])

HSP 1 Score: 569.7 bits (1467), Expect = 1.8e-158
Identity = 329/375 (87.73%), Postives = 331/375 (88.27%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYK     YGPIVDIDLKIPPRPPGYAFVE    
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK-----YGPIVDIDLKIPPRPPGYAFVE---- 60

Query: 61  LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120
                                      FED+RDAEDAIYGRDGYKFDGCRLRVEFAHGGR
Sbjct: 61  ---------------------------FEDVRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120

Query: 121 GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR 180
           GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR
Sbjct: 121 GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR 180

Query: 181 GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY 240
           GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY
Sbjct: 181 GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY 240

Query: 241 SRSPSRSPYGERG----RSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSP 300
           SRSPS SPYGERG    RSRSRSRSRSRSQSRSLRRS SHSHSGRSTSLSPRLKHSR+SP
Sbjct: 241 SRSPSCSPYGERGRSQSRSRSRSRSRSRSQSRSLRRSRSHSHSGRSTSLSPRLKHSRQSP 300

Query: 301 SISEQSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSRSRSKSRSLSRSLSPDGRSDRSRS 360
           SISEQSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSRSRSKSRSLSRSLSPDGRSD  RS
Sbjct: 301 SISEQSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSRSRSKSRSLSRSLSPDGRSD--RS 337

Query: 361 RSRSQSVDSRDRYSE 372
           RSRSQSVDSRDRYSE
Sbjct: 361 RSRSQSVDSRDRYSE 337

[Close]

BLAST of Carg25021 vs. NCBI nr
Match: XP_023530260.1 (serine/arginine-rich splicing factor SR30-like [Cucurbita pepo subsp. pepo] >XP_023530261.1 serine/arginine-rich splicing factor SR30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 568.9 bits (1465), Expect = 3.1e-158
Identity = 327/372 (87.90%), Postives = 330/372 (88.71%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYK     YGPIVDIDLKIPPRPPGYAFVE    
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK-----YGPIVDIDLKIPPRPPGYAFVE---- 60

Query: 61  LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120
                                      FED+RDAEDAIYGRDGYKFDGCRLRVEFAHGGR
Sbjct: 61  ---------------------------FEDVRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120

Query: 121 -GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRD 180
            GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRD
Sbjct: 121 GGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRD 180

Query: 181 RGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSD 240
           RGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSR+SD
Sbjct: 181 RGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRQSD 240

Query: 241 YSRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSPSIS 300
           YSRSPSRSPYGERGRSRSRSRSRSRSQSRSL RSHSHSHSGRSTS SPRLKHSRRSPSIS
Sbjct: 241 YSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRSHSHSHSGRSTSFSPRLKHSRRSPSIS 300

Query: 301 EQSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSRSRSKSRSLSRSLSPDGRSDRSRSRSR 360
           EQSQSKSLSRSRSRSRSGSPVSSR ERKIQNRSRSRSKSRSLSRSLSP+GRSD  RSRSR
Sbjct: 301 EQSQSKSLSRSRSRSRSGSPVSSRHERKIQNRSRSRSKSRSLSRSLSPEGRSD--RSRSR 334

Query: 361 SQSVDSRDRYSE 372
           SQSVDSRDRYSE
Sbjct: 361 SQSVDSRDRYSE 334

[Close]

BLAST of Carg25021 vs. ExPASy Swiss-Prot
Match: Q9XFR5 (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR30 PE=1 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 5.9e-83
Identity = 197/322 (61.18%), Postives = 219/322 (68.01%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN 60
           MSSR +RTIYVGNLPGDIR  EVEDLFYK     YGPIVDIDLKIPPRPPGYAFVE    
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYK-----YGPIVDIDLKIPPRPPGYAFVE---- 60

Query: 61  LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120
                                      FED RDA+DAIYGRDGY FDGCRLRVE AHGGR
Sbjct: 61  ---------------------------FEDPRDADDAIYGRDGYDFDGCRLRVEIAHGGR 120

Query: 121 GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR 180
             S S+D YS S S+    SRR+DYRVLVTGLPPSASWQDLKDHMR+AGDVCFSEVF DR
Sbjct: 121 RFSPSVDRYSSSYSASRAPSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFPDR 180

Query: 181 GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY 240
            GM+G+VDY+NYDDMKYAIRKLD +EFRNAFS AY+RV+EY+S RS SRSP  D  +S  
Sbjct: 181 KGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSAYIRVREYES-RSVSRSP--DDSKSYR 240

Query: 241 SRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSPSI-S 300
           SRS SR P          S+SRS S +R               S+SPR +   RS S+ S
Sbjct: 241 SRSRSRGP-----SCSYSSKSRSVSPAR---------------SISPRSRPLSRSRSLYS 263

Query: 301 EQSQSKSLSRSRSRSRSGSPVS 322
             S+S+S S+SRSRSRS SPVS
Sbjct: 301 SVSRSQSRSKSRSRSRSNSPVS 263

[Close]

BLAST of Carg25021 vs. ExPASy Swiss-Prot
Match: O22315 (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.3e-74
Identity = 196/358 (54.75%), Postives = 231/358 (64.53%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN 60
           MSSR+SRT+YVGNLPGDIR REVEDLF K     YGP+V IDLK+PPRPPGYAFVE    
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSK-----YGPVVQIDLKVPPRPPGYAFVE---- 60

Query: 61  LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120
                                      F+D RDAEDAI+GRDGY FDG RLRVE AHGGR
Sbjct: 61  ---------------------------FDDARDAEDAIHGRDGYDFDGHRLRVELAHGGR 120

Query: 121 GHSSSIDHYSRSGSSRG-----------GVSRRTDYRVLVTGLPPSASWQDLKDHMRRAG 180
             SS     S +G  RG           G SRR+++RVLVTGLP SASWQDLKDHMR+ G
Sbjct: 121 -RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGG 180

Query: 181 DVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSR 240
           DVCFS+V+RD  G  G+VDYT Y+DMKYA++KLDD+EFRNAFS  YVRV+EYDSR+  SR
Sbjct: 181 DVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVREYDSRKD-SR 240

Query: 241 SPSRDSRRSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRL 300
           SPSR      YS+S SRS    RGRS SRSRSRSRS+SRS +   S     +STS SP  
Sbjct: 241 SPSRG---RSYSKSRSRS----RGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSP-- 300

Query: 301 KHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSR-SRSKSRSLSRSLS 347
                      +S+S+S S  RSRSRS SP+ S ++   ++ S+ S +KS   +RS S
Sbjct: 301 ---------GPRSKSRSPSPRRSRSRSRSPLPSVQKEGSKSPSKPSPAKSPIHTRSPS 302

[Close]

BLAST of Carg25021 vs. ExPASy Swiss-Prot
Match: A2RVS6 (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR34A PE=2 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 2.2e-74
Identity = 192/360 (53.33%), Postives = 221/360 (61.39%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN 60
           MS R SR+IYVGNLPGDIR  E+ED+FYK     YG IVDI+LK+PPRPP Y FVE    
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYK-----YGRIVDIELKVPPRPPCYCFVE---- 60

Query: 61  LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120
                                      FE  RDAEDAI GRDGY  DGCRLRVE AHGGR
Sbjct: 61  ---------------------------FEHSRDAEDAIKGRDGYNLDGCRLRVELAHGGR 120

Query: 121 GHSSSIDH-------------YSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRR 180
           G SSS                    GS+R GVSR +++RV+V GLP SASWQDLKDHMR+
Sbjct: 121 GQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHSEFRVIVRGLPSSASWQDLKDHMRK 180

Query: 181 AGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSY 240
           AGDVCF+EV RD  G  G+VDYTNYDDMKYAIRKLDD+EFRN ++R ++RVK+Y+S RS 
Sbjct: 181 AGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLDDTEFRNPWARGFIRVKKYESSRSR 240

Query: 241 SRSPSRDSRRSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSP 300
           SRSPSR       SRS SRS      RSRSR R RS S+SRSL RS S     +  S SP
Sbjct: 241 SRSPSR-------SRSRSRS------RSRSRGRGRSHSRSRSLSRSKS---PRKDLSKSP 292

Query: 301 RLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSRSRSKSRSLSRSLSP 348
           R                +SLSRS S+SRS SP   +   +  +RS+SRS+SRS S S SP
Sbjct: 301 R----------------RSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSPSKSP 292

[Close]

BLAST of Carg25021 vs. ExPASy Swiss-Prot
Match: F4JHI7 (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR34B PE=2 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 3.2e-73
Identity = 186/328 (56.71%), Postives = 205/328 (62.50%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN 60
           MSSR+SRTIYVGNLPGDIR REVEDLF K     YGP+V IDLKIPPRPPGYAFVE    
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSK-----YGPVVQIDLKIPPRPPGYAFVE---- 60

Query: 61  LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120
                                      FED RDA+DAIYGRDGY FDG  LRVE AHGGR
Sbjct: 61  ---------------------------FEDARDADDAIYGRDGYDFDGHHLRVELAHGGR 120

Query: 121 GHSSSIDHYSRSGSSRG------------GVSRRTDYRVLVTGLPPSASWQDLKDHMRRA 180
             SS     S SG  RG            G SRR++YRV+V+GLP SASWQDLKDHMR+ 
Sbjct: 121 -RSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEYRVVVSGLPSSASWQDLKDHMRKG 180

Query: 181 GDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYS 240
           G+VCFS+VFRD  G  GIVDYT+Y+DMKYA   LDD+EFRNAFS  YVRV+EYDSRR   
Sbjct: 181 GEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDDTEFRNAFSHEYVRVREYDSRRD-- 240

Query: 241 RSPSRDSRRSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPR 300
                       SRSPS      RGRS S+SRSR RS SRS  RS S     RS S SP+
Sbjct: 241 ------------SRSPS------RGRSYSKSRSRGRSPSRSRSRSRS-----RSKSRSPK 263

Query: 301 LKHSRRSPSISEQSQSKSLSRSRSRSRS 317
            K  RRSP+ S     +S SRS+SRS S
Sbjct: 301 AKSLRRSPAKSTSRSPRSRSRSKSRSLS 263

[Close]

BLAST of Carg25021 vs. ExPASy Swiss-Prot
Match: Q9NEW6 (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans OX=6239 GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 193.7 bits (491), Expect = 3.6e-48
Identity = 135/286 (47.20%), Postives = 163/286 (56.99%), Query Frame = 0


Query: 9   IYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLNLDAFGTQS 68
           +YVGNLPGD+R +EVED+F+K     YG I  +D+K   R P +AFVE            
Sbjct: 11  VYVGNLPGDVREKEVEDIFHK-----YGRIKYVDIK-SGRGPAFAFVE------------ 70

Query: 69  LWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAH-------GGRG 128
                              FED RDAEDA+  RDGY+FDG R+RVEF         GGR 
Sbjct: 71  -------------------FEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRP 130

Query: 129 HSSSIDHY------SRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSE 188
                DH        R G   GG  RRT YRV+V GLPP+ SWQDLKDHMR AGDVC+++
Sbjct: 131 LQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYAD 190

Query: 189 VFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFR-NAFSRAYVRVKEYDSRRSYSRSPSRD 248
           V RD     G+V++T Y+D+KYA+RKLDD++FR +    AY+RV+E +S    S    RD
Sbjct: 191 VARDG---TGVVEFTRYEDVKYAVRKLDDTKFRSHEGETAYIRVREDNSSGGGSGGGGRD 250

Query: 249 SRRSDYSR-----SPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHS 276
             RS   R     SP  SP   R RSRSRSRSRSRS SRS  RS S
Sbjct: 251 RSRSRSPRAERRASPKYSPRRSRSRSRSRSRSRSRSASRSPSRSPS 256

[Close]

BLAST of Carg25021 vs. ExPASy TrEMBL
Match: A0A6J1ESI8 (serine/arginine-rich splicing factor SR30-like OS=Cucurbita moschata OX=3662 GN=LOC111435599 PE=4 SV=1)

HSP 1 Score: 584.7 bits (1506), Expect = 2.7e-163
Identity = 331/371 (89.22%), Postives = 334/371 (90.03%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYK     YGPIVDIDLKIPPRPPGYAFVE    
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK-----YGPIVDIDLKIPPRPPGYAFVE---- 60

Query: 61  LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120
                                      FEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR
Sbjct: 61  ---------------------------FEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120

Query: 121 GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR 180
           GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR
Sbjct: 121 GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR 180

Query: 181 GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY 240
           GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY
Sbjct: 181 GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY 240

Query: 241 SRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSPSISE 300
           SRSPSRSP+GERGRS+SRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSPSISE
Sbjct: 241 SRSPSRSPHGERGRSQSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSPSISE 300

Query: 301 QSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSRSRSKSRSLSRSLSPDGRSDRSRSRSRS 360
           QSQSKSLSRSRSRSRSGSPVSSRRERK QNRSRSRSKSRSLSRSLSPDGRSDRSRSRSRS
Sbjct: 301 QSQSKSLSRSRSRSRSGSPVSSRRERKFQNRSRSRSKSRSLSRSLSPDGRSDRSRSRSRS 335

Query: 361 QSVDSRDRYSE 372
           +SVDSRDRYSE
Sbjct: 361 RSVDSRDRYSE 335

[Close]

BLAST of Carg25021 vs. ExPASy TrEMBL
Match: A0A6J1HYQ5 (serine/arginine-rich splicing factor SR30-like OS=Cucurbita maxima OX=3661 GN=LOC111468858 PE=4 SV=1)

HSP 1 Score: 569.7 bits (1467), Expect = 8.9e-159
Identity = 329/375 (87.73%), Postives = 331/375 (88.27%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYK     YGPIVDIDLKIPPRPPGYAFVE    
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK-----YGPIVDIDLKIPPRPPGYAFVE---- 60

Query: 61  LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120
                                      FED+RDAEDAIYGRDGYKFDGCRLRVEFAHGGR
Sbjct: 61  ---------------------------FEDVRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120

Query: 121 GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR 180
           GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR
Sbjct: 121 GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR 180

Query: 181 GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY 240
           GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY
Sbjct: 181 GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY 240

Query: 241 SRSPSRSPYGERG----RSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSP 300
           SRSPS SPYGERG    RSRSRSRSRSRSQSRSLRRS SHSHSGRSTSLSPRLKHSR+SP
Sbjct: 241 SRSPSCSPYGERGRSQSRSRSRSRSRSRSQSRSLRRSRSHSHSGRSTSLSPRLKHSRQSP 300

Query: 301 SISEQSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSRSRSKSRSLSRSLSPDGRSDRSRS 360
           SISEQSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSRSRSKSRSLSRSLSPDGRSD  RS
Sbjct: 301 SISEQSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSRSRSKSRSLSRSLSPDGRSD--RS 337

Query: 361 RSRSQSVDSRDRYSE 372
           RSRSQSVDSRDRYSE
Sbjct: 361 RSRSQSVDSRDRYSE 337

[Close]

BLAST of Carg25021 vs. ExPASy TrEMBL
Match: A0A6J1C3Z4 (serine/arginine-rich splicing factor SR30 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007710 PE=4 SV=1)

HSP 1 Score: 507.7 bits (1306), Expect = 4.2e-140
Identity = 299/372 (80.38%), Postives = 309/372 (83.06%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN 60
           MSSRNSRTIYVGNLPGDIRL+EVEDLFYK     YGPIVDIDLKIPPRPPGYAFVE    
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLKEVEDLFYK-----YGPIVDIDLKIPPRPPGYAFVE---- 60

Query: 61  LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120
                                      FED+RDAEDAIYGRDGYKFDGCRLRVEFAHGGR
Sbjct: 61  ---------------------------FEDVRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120

Query: 121 GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR 180
           G SSSID YSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR
Sbjct: 121 GQSSSIDRYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR 180

Query: 181 GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY 240
           GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSR+YVRVKEYDSRRSYSRSPS DSRRSDY
Sbjct: 181 GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRSYVRVKEYDSRRSYSRSPSHDSRRSDY 240

Query: 241 SRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSPSISE 300
           SRSPSRSPY ERGRSRSRSRS SR          SHSHSGRSTSLSPRL HSRRS SISE
Sbjct: 241 SRSPSRSPYRERGRSRSRSRSLSR----------SHSHSGRSTSLSPRLNHSRRSRSISE 300

Query: 301 QSQSKSLSRSRSRSRSGSPVSSR-RERKIQNRSRSRSKSRSLSRSLSPDGRSDRSRSRSR 360
           QS+SKSLSRSRSRSRS SP+SSR RE K ++RSRSRS SRSLSRSLSP+ RSD  +SRSR
Sbjct: 301 QSRSKSLSRSRSRSRSRSPISSRHRESKPRSRSRSRSNSRSLSRSLSPNARSD--QSRSR 324

Query: 361 SQSVDSRDRYSE 372
             SV+SRDRYSE
Sbjct: 361 GLSVESRDRYSE 324

[Close]

BLAST of Carg25021 vs. ExPASy TrEMBL
Match: A0A6J1C1X9 (serine/arginine-rich splicing factor SR30 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007710 PE=4 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 2.3e-138
Identity = 299/376 (79.52%), Postives = 309/376 (82.18%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN 60
           MSSRNSRTIYVGNLPGDIRL+EVEDLFYK     YGPIVDIDLKIPPRPPGYAFVE    
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLKEVEDLFYK-----YGPIVDIDLKIPPRPPGYAFVE---- 60

Query: 61  LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120
                                      FED+RDAEDAIYGRDGYKFDGCRLRVEFAHGGR
Sbjct: 61  ---------------------------FEDVRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120

Query: 121 GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR 180
           G SSSID YSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR
Sbjct: 121 GQSSSIDRYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR 180

Query: 181 GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY 240
           GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSR+YVRVKEYDSRRSYSRSPS DSRRSDY
Sbjct: 181 GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRSYVRVKEYDSRRSYSRSPSHDSRRSDY 240

Query: 241 SRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSPSISE 300
           SRSPSRSPY ERGRSRSRSRS SR          SHSHSGRSTSLSPRL HSRRS SISE
Sbjct: 241 SRSPSRSPYRERGRSRSRSRSLSR----------SHSHSGRSTSLSPRLNHSRRSRSISE 300

Query: 301 QSQSKSLSRSRSRSRSGSPVSSR-RERKIQNRSRSRSKSRSLSRSLSPD----GRSDRSR 360
           QS+SKSLSRSRSRSRS SP+SSR RE K ++RSRSRS SRSLSRSLSP+     RSD  +
Sbjct: 301 QSRSKSLSRSRSRSRSRSPISSRHRESKPRSRSRSRSNSRSLSRSLSPNVVILARSD--Q 328

Query: 361 SRSRSQSVDSRDRYSE 372
           SRSR  SV+SRDRYSE
Sbjct: 361 SRSRGLSVESRDRYSE 328

[Close]

BLAST of Carg25021 vs. ExPASy TrEMBL
Match: A0A1S3BPM4 (serine/arginine-rich splicing factor SR30 OS=Cucumis melo OX=3656 GN=LOC103492152 PE=4 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 7.6e-134
Identity = 291/371 (78.44%), Postives = 301/371 (81.13%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYK     YGPIVDIDLKIPPRPPGYAFVE    
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYK-----YGPIVDIDLKIPPRPPGYAFVE---- 60

Query: 61  LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120
                                      FED+RDAEDAIYGRDGYKFDGCRLRVEFAHGGR
Sbjct: 61  ---------------------------FEDVRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120

Query: 121 GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR 180
           GHSSS+D YSRSGSSRGGV RRTDYRVLVTGLP SASWQDLKDHMRRAGDVCFSEVFRDR
Sbjct: 121 GHSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSEVFRDR 180

Query: 181 GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY 240
           GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSR SYSRSPS DSRRSDY
Sbjct: 181 GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRHSYSRSPSLDSRRSDY 240

Query: 241 SRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSPSISE 300
           SRSPS SPY  RGRS+SRSRSRSRS+          S+SGRSTSLSPR KHSRRS SISE
Sbjct: 241 SRSPSGSPYRGRGRSQSRSRSRSRSR----------SYSGRSTSLSPRHKHSRRSRSISE 300

Query: 301 QSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSRSRSKSRSLSRSLSPDGRSDRSRSRSRS 360
           QS S+S SRSRSRSRS SPVSSR      +R RSRS+SRS SRSLSP+ RSD  RSRSRS
Sbjct: 301 QSLSRSRSRSRSRSRSRSPVSSRHR---ASRPRSRSRSRSKSRSLSPNVRSD--RSRSRS 320

Query: 361 QSVDSRDRYSE 372
           QSVDSRD+YSE
Sbjct: 361 QSVDSRDQYSE 320

[Close]

BLAST of Carg25021 vs. TAIR 10
Match: AT1G09140.1 (SERINE-ARGININE PROTEIN 30 )

HSP 1 Score: 309.3 bits (791), Expect = 4.2e-84
Identity = 197/322 (61.18%), Postives = 219/322 (68.01%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN 60
           MSSR +RTIYVGNLPGDIR  EVEDLFYK     YGPIVDIDLKIPPRPPGYAFVE    
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYK-----YGPIVDIDLKIPPRPPGYAFVE---- 60

Query: 61  LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120
                                      FED RDA+DAIYGRDGY FDGCRLRVE AHGGR
Sbjct: 61  ---------------------------FEDPRDADDAIYGRDGYDFDGCRLRVEIAHGGR 120

Query: 121 GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR 180
             S S+D YS S S+    SRR+DYRVLVTGLPPSASWQDLKDHMR+AGDVCFSEVF DR
Sbjct: 121 RFSPSVDRYSSSYSASRAPSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFPDR 180

Query: 181 GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY 240
            GM+G+VDY+NYDDMKYAIRKLD +EFRNAFS AY+RV+EY+S RS SRSP  D  +S  
Sbjct: 181 KGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSAYIRVREYES-RSVSRSP--DDSKSYR 240

Query: 241 SRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRLKHSRRSPSI-S 300
           SRS SR P          S+SRS S +R               S+SPR +   RS S+ S
Sbjct: 241 SRSRSRGP-----SCSYSSKSRSVSPAR---------------SISPRSRPLSRSRSLYS 263

Query: 301 EQSQSKSLSRSRSRSRSGSPVS 322
             S+S+S S+SRSRSRS SPVS
Sbjct: 301 SVSRSQSRSKSRSRSRSNSPVS 263

[Close]

BLAST of Carg25021 vs. TAIR 10
Match: AT1G09140.2 (SERINE-ARGININE PROTEIN 30 )

HSP 1 Score: 302.0 bits (772), Expect = 6.7e-82
Identity = 186/289 (64.36%), Postives = 204/289 (70.59%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN 60
           MSSR +RTIYVGNLPGDIR  EVEDLFYK     YGPIVDIDLKIPPRPPGYAFVE    
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYK-----YGPIVDIDLKIPPRPPGYAFVE---- 60

Query: 61  LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120
                                      FED RDA+DAIYGRDGY FDGCRLRVE AHGGR
Sbjct: 61  ---------------------------FEDPRDADDAIYGRDGYDFDGCRLRVEIAHGGR 120

Query: 121 GHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSEVFRDR 180
             S S+D YS S S+    SRR+DYRVLVTGLPPSASWQDLKDHMR+AGDVCFSEVF DR
Sbjct: 121 RFSPSVDRYSSSYSASRAPSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFPDR 180

Query: 181 GGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSRSPSRDSRRSDY 240
            GM+G+VDY+NYDDMKYAIRKLD +EFRNAFS AY+RV+EY+S RS SRSP  D  +S  
Sbjct: 181 KGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSAYIRVREYES-RSVSRSP--DDSKSYR 240

Query: 241 SRSPSRSP---YGERGRSRSRSRSRSRSQSRSLRRSHS-HSHSGRSTSL 286
           SRS SR P   Y  + RS S +RS S  +SR L RS S +S   RS SL
Sbjct: 241 SRSRSRGPSCSYSSKSRSVSPARSIS-PRSRPLSRSRSLYSSVSRSGSL 249

[Close]

BLAST of Carg25021 vs. TAIR 10
Match: AT1G02840.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 288.1 bits (736), Expect = 1.0e-77
Identity = 180/308 (58.44%), Postives = 205/308 (66.56%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN 60
           MSSR+SRT+YVGNLPGDIR REVEDLF K     YGP+V IDLK+PPRPPGYAFVE    
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSK-----YGPVVQIDLKVPPRPPGYAFVE---- 60

Query: 61  LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120
                                      F+D RDAEDAI+GRDGY FDG RLRVE AHGGR
Sbjct: 61  ---------------------------FDDARDAEDAIHGRDGYDFDGHRLRVELAHGGR 120

Query: 121 GHSSSIDHYSRSGSSRG-----------GVSRRTDYRVLVTGLPPSASWQDLKDHMRRAG 180
             SS     S +G  RG           G SRR+++RVLVTGLP SASWQDLKDHMR+ G
Sbjct: 121 -RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGG 180

Query: 181 DVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSR 240
           DVCFS+V+RD  G  G+VDYT Y+DMKYA++KLDD+EFRNAFS  YVRV+EYDSR+  SR
Sbjct: 181 DVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVREYDSRKD-SR 240

Query: 241 SPSRDSRRSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRL 298
           SPSR      YS+S SRS    RGRS SRSRSRSRS+SRS +   S     +STS SP  
Sbjct: 241 SPSRG---RSYSKSRSRS----RGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGP 263

[Close]

BLAST of Carg25021 vs. TAIR 10
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 281.6 bits (719), Expect = 9.3e-76
Identity = 196/358 (54.75%), Postives = 231/358 (64.53%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN 60
           MSSR+SRT+YVGNLPGDIR REVEDLF K     YGP+V IDLK+PPRPPGYAFVE    
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSK-----YGPVVQIDLKVPPRPPGYAFVE---- 60

Query: 61  LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120
                                      F+D RDAEDAI+GRDGY FDG RLRVE AHGGR
Sbjct: 61  ---------------------------FDDARDAEDAIHGRDGYDFDGHRLRVELAHGGR 120

Query: 121 GHSSSIDHYSRSGSSRG-----------GVSRRTDYRVLVTGLPPSASWQDLKDHMRRAG 180
             SS     S +G  RG           G SRR+++RVLVTGLP SASWQDLKDHMR+ G
Sbjct: 121 -RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGG 180

Query: 181 DVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSR 240
           DVCFS+V+RD  G  G+VDYT Y+DMKYA++KLDD+EFRNAFS  YVRV+EYDSR+  SR
Sbjct: 181 DVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVREYDSRKD-SR 240

Query: 241 SPSRDSRRSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRL 300
           SPSR      YS+S SRS    RGRS SRSRSRSRS+SRS +   S     +STS SP  
Sbjct: 241 SPSRG---RSYSKSRSRS----RGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSP-- 300

Query: 301 KHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSR-SRSKSRSLSRSLS 347
                      +S+S+S S  RSRSRS SP+ S ++   ++ S+ S +KS   +RS S
Sbjct: 301 ---------GPRSKSRSPSPRRSRSRSRSPLPSVQKEGSKSPSKPSPAKSPIHTRSPS 302

[Close]

BLAST of Carg25021 vs. TAIR 10
Match: AT1G02840.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 281.6 bits (719), Expect = 9.3e-76
Identity = 196/358 (54.75%), Postives = 231/358 (64.53%), Query Frame = 0


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKLMIGNYGPIVDIDLKIPPRPPGYAFVEVRLN 60
           MSSR+SRT+YVGNLPGDIR REVEDLF K     YGP+V IDLK+PPRPPGYAFVE    
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSK-----YGPVVQIDLKVPPRPPGYAFVE---- 60

Query: 61  LDAFGTQSLWPEYFSSESLQIGVLSFWFEDIRDAEDAIYGRDGYKFDGCRLRVEFAHGGR 120
                                      F+D RDAEDAI+GRDGY FDG RLRVE AHGGR
Sbjct: 61  ---------------------------FDDARDAEDAIHGRDGYDFDGHRLRVELAHGGR 120

Query: 121 GHSSSIDHYSRSGSSRG-----------GVSRRTDYRVLVTGLPPSASWQDLKDHMRRAG 180
             SS     S +G  RG           G SRR+++RVLVTGLP SASWQDLKDHMR+ G
Sbjct: 121 -RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGG 180

Query: 181 DVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRRSYSR 240
           DVCFS+V+RD  G  G+VDYT Y+DMKYA++KLDD+EFRNAFS  YVRV+EYDSR+  SR
Sbjct: 181 DVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVREYDSRKD-SR 240

Query: 241 SPSRDSRRSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLRRSHSHSHSGRSTSLSPRL 300
           SPSR      YS+S SRS    RGRS SRSRSRSRS+SRS +   S     +STS SP  
Sbjct: 241 SPSRG---RSYSKSRSRS----RGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSP-- 300

Query: 301 KHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRRERKIQNRSR-SRSKSRSLSRSLS 347
                      +S+S+S S  RSRSRS SP+ S ++   ++ S+ S +KS   +RS S
Sbjct: 301 ---------GPRSKSRSPSPRRSRSRSRSPLPSVQKEGSKSPSKPSPAKSPIHTRSPS 302

The following BLAST results are available for this feature:

BLAST of Carg25021 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022321.1	4.6e-194	100.00	Serine/arginine-rich splicing factor SR30 [Cucurbita argyrosperma subsp. argyros...	[more]
KAG6588492.1	5.9e-165	90.30	Serine/arginine-rich splicing factor SR30, partial [Cucurbita argyrosperma subsp...	[more]
XP_022928780.1	5.5e-163	89.22	serine/arginine-rich splicing factor SR30-like [Cucurbita moschata] >XP_02292878...	[more]
XP_022969758.1	1.8e-158	87.73	serine/arginine-rich splicing factor SR30-like [Cucurbita maxima] >XP_022969766....	[more]
XP_023530260.1	3.1e-158	87.90	serine/arginine-rich splicing factor SR30-like [Cucurbita pepo subsp. pepo] >XP_...	[more]

BLAST of Carg25021 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XFR5	5.9e-83	61.18	Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
O22315	1.3e-74	54.75	Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
A2RVS6	2.2e-74	53.33	Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
F4JHI7	3.2e-73	56.71	Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q9NEW6	3.6e-48	47.20	Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans OX=62...	[more]

BLAST of Carg25021 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ESI8	2.7e-163	89.22	serine/arginine-rich splicing factor SR30-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HYQ5	8.9e-159	87.73	serine/arginine-rich splicing factor SR30-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1C3Z4	4.2e-140	80.38	serine/arginine-rich splicing factor SR30 isoform X2 OS=Momordica charantia OX=3...	[more]
A0A6J1C1X9	2.3e-138	79.52	serine/arginine-rich splicing factor SR30 isoform X1 OS=Momordica charantia OX=3...	[more]
A0A1S3BPM4	7.6e-134	78.44	serine/arginine-rich splicing factor SR30 OS=Cucumis melo OX=3656 GN=LOC10349215...	[more]

BLAST of Carg25021 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09140.1	4.2e-84	61.18	SERINE-ARGININE PROTEIN 30	[more]
AT1G09140.2	6.7e-82	64.36	SERINE-ARGININE PROTEIN 30	[more]
AT1G02840.2	1.0e-77	58.44	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G02840.1	9.3e-76	54.75	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G02840.3	9.3e-76	54.75	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 146..217 e-value: 1.3E-6 score: 37.9 coord: 8..114 e-value: 0.0014 score: 27.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 147..209 e-value: 9.4E-10 score: 38.2 coord: 9..57 e-value: 1.3E-4 score: 21.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 145..223 score: 9.746194
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..118 score: 11.775786
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..145 e-value: 1.1E-17 score: 66.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 146..222 e-value: 8.2E-22 score: 78.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 346..371
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 279..317
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 221..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 257..278
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 221..371
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 2..58 coord: 88..314
None	No IPR available	PANTHER	PTHR23147:SF198	PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN	coord: 2..58 coord: 88..314
None	No IPR available	CDD	cd12602	RRM2_SF2_plant_like	coord: 145..220 e-value: 1.05237E-45 score: 149.194
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 138..236
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 3..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25021-RA	Carg25021-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding