Carg24926 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24926
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr15: 5118527 .. 5119786 (+)
RNA-Seq ExpressionCarg24926
SyntenyCarg24926
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAATTCATTTTTTTTTTCCTTCTATTCAACCATCCTGGCTTTCTATTTGTTTTTGCCTAAACCCTATTTCACGTTTTGCCGCCACTCCCTCCCATTACCAGCCACTGCACCCCGCCCTGCCGCTCGACGGCCGCCACCCCTACCCGACGCTGCACTTCCAGCTGCTGCAGTCTCAGACACCCGACGAAATTGTCCCCGTTCCTTGCCTCTCAAACTCTATCGCCTGTCCGAGCAACCAGAGTTACTTATCTCTGTTGTTATTCTTTTTTCAGTGGTTTAGCCTCAAACCTGTGCCGTTGGTGAGGTCGCACCGTCCCACTCACACACCGCTGCTCATTTTTCGTACACCTAAGGTTTTGATTTTTTTGATTTTGTTTTGTTGATTGAATTATGTTGATTTATTCTGCTCTCCGCGAAGAAGAAAATCGGAAGTATCTTTTTCTTTTTTTTTGTTGGTTTCTTCTTCAATCAATCTTCAAAGACAGATTGAATCAGTAAGTAAAAAGAAATAAACAAACATATCATTCTTATCCAAATCAATTAATAATGGAAAAAAAAAAAGTTTAAGAAGATGAACGAAGCAAAAAAGGAAACTTACCTGTATGTAGTTTTCTCAGCTTAAAAAAAAAAAAAAAAAAACTGGTTGGAACCGGAAAGCTGTATTGAAAGGATTGAAATTATTGGTATCAGTTATACAAGAACAGAAAAATACAATGGTCAAACAAAATAGAACACTGTTGTGGAGTTTGCTTGAATGTAGGAGAAACTATAATGCATATATAAATTGGCACTGTTTTCAAATTCCTATTTTACTTTTCATCCAAACACGTGGACTGATTAGAATTCCTTCCAAATTCAGGTTTCTAAACAGGGGTAAGGTAGAATTTGGCTTAAAAATACAAAATCTTCCTTTTATCATTATTTTATTCTGCATTTTCTCGGTTACTAACAATAGCATTAGAATTTCGAGGTTAGAAGTAGCTTTACCTCAGTAAATTGAAATTTTTGGTTACACTGAGAATTTTTGGATTTCAGAACTTGTAATGCCATTAGTTTCTTCACATTACAAAATTTCCGCGAAACTTGAACCATGCTCCAAGGAAGAGGAGAAGGGAGATTGGTTTATTGCGTTAAATTTTTAGTTCATTGAGGAAGTATCGCTCCATGTTAACTTTTATATCCATATGACACTAATTAGATTGTGTTAATTATTGTTTTCTAAGAAAAAGTTAATGTGCAGAGTTGCTGTGACTAA

mRNA sequence

ATGAAAAATTCATTTTTTTTTTCCTTCTATTCAACCATCCTGGCTTTCTATTTGTTTTTGCCTAAACCCTATTTCACGTTTTGCCGCCACTCCCTCCCATTACCAGCCACTGCACCCCGCCCTGCCGCTCGACGGCCGCCACCCCTACCCGACGCTGCACTTCCAGCTGCTGCAGTCTCAGACACCCGACGAAATTGTCCCCGTTCCTTGCCTCTCAAACTCTATCGCCTGTCCGAGCAACCAGAGTTACTTATCTCTGTTTGGTTTAGCCTCAAACCTGTGCCGTTGGTGAGGTCGCACCGTCCCACTCACACACCGCTGCTCATTTTTCGTACACCTAAGAGTTGCTGTGACTAA

Coding sequence (CDS)

ATGAAAAATTCATTTTTTTTTTCCTTCTATTCAACCATCCTGGCTTTCTATTTGTTTTTGCCTAAACCCTATTTCACGTTTTGCCGCCACTCCCTCCCATTACCAGCCACTGCACCCCGCCCTGCCGCTCGACGGCCGCCACCCCTACCCGACGCTGCACTTCCAGCTGCTGCAGTCTCAGACACCCGACGAAATTGTCCCCGTTCCTTGCCTCTCAAACTCTATCGCCTGTCCGAGCAACCAGAGTTACTTATCTCTGTTTGGTTTAGCCTCAAACCTGTGCCGTTGGTGAGGTCGCACCGTCCCACTCACACACCGCTGCTCATTTTTCGTACACCTAAGAGTTGCTGTGACTAA

Protein sequence

MKNSFFFSFYSTILAFYLFLPKPYFTFCRHSLPLPATAPRPAARRPPPLPDAALPAAAVSDTRRNCPRSLPLKLYRLSEQPELLISVWFSLKPVPLVRSHRPTHTPLLIFRTPKSCCD
Homology
[Close]
BLAST of Carg24926 vs. NCBI nr
Match: KAG7016731.1 (hypothetical protein SDJN02_21841, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.4 bits (607), Expect = 3.1e-59
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MKNSFFFSFYSTILAFYLFLPKPYFTFCRHSLPLPATAPRPAARRPPPLPDAALPAAAVS 60
           MKNSFFFSFYSTILAFYLFLPKPYFTFCRHSLPLPATAPRPAARRPPPLPDAALPAAAVS
Sbjct: 1   MKNSFFFSFYSTILAFYLFLPKPYFTFCRHSLPLPATAPRPAARRPPPLPDAALPAAAVS 60

Query: 61  DTRRNCPRSLPLKLYRLSEQPELLISVWFSLKPVPLVRSHRPTHTPLLIFRTPKSCCD 119
           DTRRNCPRSLPLKLYRLSEQPELLISVWFSLKPVPLVRSHRPTHTPLLIFRTPKSCCD
Sbjct: 61  DTRRNCPRSLPLKLYRLSEQPELLISVWFSLKPVPLVRSHRPTHTPLLIFRTPKSCCD 118

[Close]
BLAST of Carg24926 vs. NCBI nr
Match: KAG6579219.1 (Mitochondrial import inner membrane translocase subunit TIM44-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-06
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 87  VWFSLKPVPLVRSHRPTHTPLLIFRTPKS 116
           +WFSLKPVPLVRSHRPTHTPLLIFRTPK+
Sbjct: 138 IWFSLKPVPLVRSHRPTHTPLLIFRTPKN 166

The following BLAST results are available for this feature:
BLAST of Carg24926 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016731.13.1e-59100.00hypothetical protein SDJN02_21841, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6579219.11.0e-0693.10Mitochondrial import inner membrane translocase subunit TIM44-2, partial [Cucurb... [more]
BLAST of Carg24926 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24926 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24926 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24926-RACarg24926-RAmRNA