Carg24739 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24739
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr09: 5756964 .. 5759006 (-)
RNA-Seq Expression	Carg24739
Synteny	Carg24739

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTGGAGATCAGGGCAGTCTGAGAGAGTGCTGGGAATACTGCCTGTTAATTTGTTCTCCCAAGCAAAAAATAAATGCAAGTTCTTAAGGTTGCCTACCGAAACCGGTATCTCGCCCGAAAGTTTGTTGTTGTCTACTTCCACATGAACCAAAGTCGAACAATTAAACATTTCCGGAGGTATTGAACCCGTAATCTGATTAAGACTTAGTTGAAACTCTTGAAGTTTAGGTAGCCGTCCTATACTTTTCGGTATGGTTCCATTTAGAAGATTTTCGGAAACGTCTAGGATTACGAGTTCCTCGCAGTCTCCAATCTCTTCTGGTATAGATTCTTCCAACAAGTTCAACCATAGAAAAAGTGTTTGAAGCTTTTTCAGCTTCCCAATTCCTCTAGGTATCCGCCCAGAAATGCTATTCTGATACAATATAAGAGTTTGCAACTCACTGCAGTTTCCGATCTCTTCCGGGATTGTGTTGAAAAGTTGTGCTTTATATATGACTATGTTCTGTATGTTTTTCAGCATCCCAATCGATGAAGGAAGAGCTCCGAAGATTCCGGTTTCGGCTAGGCCTAACATGACTAAACTGCTGCAGTTTCCAATCTCCATTGGCAATTTACCTTCCAGAAGTTTATTCCCTCCAGCTCTGAAAAGATTAAGCTTCTGCAACATTCCAATGCTCTTTGGAATCTCCCCACTGATTTCATTGTCTGCGAGTCTAAGATACACGAGGTTCGAAAGATTCCCAATCGTTAACGGTATCGTCCCTTCAAACCCATTGCTTTGAAGGGACAAATCCTCCAGCTTCCCCAGCCTGCAAATCTCTTCTGGGATTTCTCCCAAAAGGTTATTTTGGCTAAGATCAAGAACTCTGAGCTCGTTATAATCTCCAAACTCTTTCGGGATTCTTCCGGTTATATTCGTCTCAGATATCACCAGGGTCCTCAAGAACTTAAGAGCCTGGAAATTCGATGGCAATGTACCTCGCAAATCCAGTGATGCCAGGGTTATCTCCTCTACATATCCATGGGAGTTGCAGACAACTCCAAACCATGAACACGGTGTCGGGTCCTCCGGATTCCATGTACTCAAAGCATCTGTAGAGCTCGTTAGATTACTCTTCCATGTGAGAAGAGCTCTACCCTGCTCATCAATGGAGTAACAACATGGAAAGAGACGGATACTTAGTGATAAAATCAAGGCTATGGCGAAGAATTGAGAAGGAATTAAGGGATTTCTTAGAATTGCAGCCATTGTTCTTCAAAACTTATGATACAAAATGATCCGATTTGGATTGAACAAAGGGGAAATCCATGTTTTGTTTATAGGAGAAGAAGAAAAAGAAGAACAGAGGTATGTGAATTCAAGATCCTTCTCTCTATTCCTTCTCTGGTTTGGTTCTTAGTTCTTAATACGGGAATATGGTTTTTTCTCTCCCTGTTTTTAATCTTTATTAAGCAAACAGTTCATTTTTCCTTTTGTTCTTTCCTTTGGTTAGCAAATCCTCATAAAATGGTTGTTTTTTTTTTGTTAAATATTCACCTTAGTTCATAATGTTTTAGGGAAATTCTCAACTTAGTCCTCAACTTTTTTAAAATTCTCAATTGTTCTATATCATTTTGTTCTTCTCTGTTTACTGAAAGGTGATTGATTGATCAATAATTTATGCTTTTATTGGACAGGTGCATTCCACGTGTCGTGTTCGATACGAGAATATGTTGATGCTACGATTGAGAAAAATCGAAAGATCAGGGGTAAGTTTAAAAATTTTAAAAGATTGAGGACCGAATTGAGAATTTTTCGAACGATGGTGGTTACTCGTTTTTTTTTTTATTAGTTGCAACATAAGTTGTTGGGGGAGTTTTGTTTATGGTAGGAACGATTAGAAATGACACGTATTTTCTATTGATATGAACTACTTTAGCCAACTTATATGGTTATTTATGGTTAAAATATAACCTCTTCATATGGCTATTTGAATCAAGGTTTCGGGTTGATCGACCTCTCGACATTGGAGAAACCGTCGAGGTCTTGGCCTTAA

mRNA sequence

ATGGCCTGGAGATCAGGGCAGTCTGAGAGAGTGCTGGGAATACTGCCTGTTAATTTGTTCTCCCAAGCAAAAAATAAATGCAAGTTCTTAAGGTTGCCTACCGAAACCGGTAGCCGTCCTATACTTTTCGGTATGGTTCCATTTAGAAGATTTTCGGAAACGTCTAGGATTACGAGTTCCTCGCAGTCTCCAATCTCTTCTGGTATAGATTCTTCCAACAACATCCCAATCGATGAAGGAAGAGCTCCGAAGATTCCGGTTTCGGCTAGGCCTAACATGACTAAACTGCTGCAGTTTCCAATCTCCATTGGCAATTTACCTTCCAGAAGTTTATTCCCTCCAGCTCTGAAAAGATTAAGCTTCTGCAACATTCCAATGCTCTTTGGAATCTCCCCACTGATTTCATTGTCTGCGAGTCTAAGATACACGAGGTTCGAAAGATTCCCAATCGTTAACGATATCACCAGGGTCCTCAAGAACTTAAGAGCCTGGAAATTCGATGGCAATGTACCTCGCAAATCCAGTGATGCCAGGGTTATCTCCTCTACATATCCATGGGAGTTGCAGACAACTCCAAACCATGAACACGGTGTCGGGTCCTCCGGATTCCATGTACTCAAAGCATCTGTAGAGCTCGTTAGATTACTCTTCCATGAGAAGAAGAAAAAGAAGAACAGAGGTGCATTCCACGTGTCGTGTTCGATACGAGAATATGTTGATGCTACGATTGAGAAAAATCGAAAGATCAGGGGTTTCGGGTTGATCGACCTCTCGACATTGGAGAAACCGTCGAGGTCTTGGCCTTAA

Coding sequence (CDS)

ATGGCCTGGAGATCAGGGCAGTCTGAGAGAGTGCTGGGAATACTGCCTGTTAATTTGTTCTCCCAAGCAAAAAATAAATGCAAGTTCTTAAGGTTGCCTACCGAAACCGGTAGCCGTCCTATACTTTTCGGTATGGTTCCATTTAGAAGATTTTCGGAAACGTCTAGGATTACGAGTTCCTCGCAGTCTCCAATCTCTTCTGGTATAGATTCTTCCAACAACATCCCAATCGATGAAGGAAGAGCTCCGAAGATTCCGGTTTCGGCTAGGCCTAACATGACTAAACTGCTGCAGTTTCCAATCTCCATTGGCAATTTACCTTCCAGAAGTTTATTCCCTCCAGCTCTGAAAAGATTAAGCTTCTGCAACATTCCAATGCTCTTTGGAATCTCCCCACTGATTTCATTGTCTGCGAGTCTAAGATACACGAGGTTCGAAAGATTCCCAATCGTTAACGATATCACCAGGGTCCTCAAGAACTTAAGAGCCTGGAAATTCGATGGCAATGTACCTCGCAAATCCAGTGATGCCAGGGTTATCTCCTCTACATATCCATGGGAGTTGCAGACAACTCCAAACCATGAACACGGTGTCGGGTCCTCCGGATTCCATGTACTCAAAGCATCTGTAGAGCTCGTTAGATTACTCTTCCATGAGAAGAAGAAAAAGAAGAACAGAGGTGCATTCCACGTGTCGTGTTCGATACGAGAATATGTTGATGCTACGATTGAGAAAAATCGAAAGATCAGGGGTTTCGGGTTGATCGACCTCTCGACATTGGAGAAACCGTCGAGGTCTTGGCCTTAA

Protein sequence

MAWRSGQSERVLGILPVNLFSQAKNKCKFLRLPTETGSRPILFGMVPFRRFSETSRITSSSQSPISSGIDSSNNIPIDEGRAPKIPVSARPNMTKLLQFPISIGNLPSRSLFPPALKRLSFCNIPMLFGISPLISLSASLRYTRFERFPIVNDITRVLKNLRAWKFDGNVPRKSSDARVISSTYPWELQTTPNHEHGVGSSGFHVLKASVELVRLLFHEKKKKKNRGAFHVSCSIREYVDATIEKNRKIRGFGLIDLSTLEKPSRSWP

Homology

[Close]

BLAST of Carg24739 vs. NCBI nr
Match: KAG7024988.1 (hypothetical protein SDJN02_13808, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 540.4 bits (1391), Expect = 8.6e-150
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0


Query: 1   MAWRSGQSERVLGILPVNLFSQAKNKCKFLRLPTETGSRPILFGMVPFRRFSETSRITSS 60
           MAWRSGQSERVLGILPVNLFSQAKNKCKFLRLPTETGSRPILFGMVPFRRFSETSRITSS
Sbjct: 1   MAWRSGQSERVLGILPVNLFSQAKNKCKFLRLPTETGSRPILFGMVPFRRFSETSRITSS 60

Query: 61  SQSPISSGIDSSNNIPIDEGRAPKIPVSARPNMTKLLQFPISIGNLPSRSLFPPALKRLS 120
           SQSPISSGIDSSNNIPIDEGRAPKIPVSARPNMTKLLQFPISIGNLPSRSLFPPALKRLS
Sbjct: 61  SQSPISSGIDSSNNIPIDEGRAPKIPVSARPNMTKLLQFPISIGNLPSRSLFPPALKRLS 120

Query: 121 FCNIPMLFGISPLISLSASLRYTRFERFPIVNDITRVLKNLRAWKFDGNVPRKSSDARVI 180
           FCNIPMLFGISPLISLSASLRYTRFERFPIVNDITRVLKNLRAWKFDGNVPRKSSDARVI
Sbjct: 121 FCNIPMLFGISPLISLSASLRYTRFERFPIVNDITRVLKNLRAWKFDGNVPRKSSDARVI 180

Query: 181 SSTYPWELQTTPNHEHGVGSSGFHVLKASVELVRLLFHEKKKKKNRGAFHVSCSIREYVD 240
           SSTYPWELQTTPNHEHGVGSSGFHVLKASVELVRLLFHEKKKKKNRGAFHVSCSIREYVD
Sbjct: 181 SSTYPWELQTTPNHEHGVGSSGFHVLKASVELVRLLFHEKKKKKNRGAFHVSCSIREYVD 240

Query: 241 ATIEKNRKIRGFGLIDLSTLEKPSRSWP 269
           ATIEKNRKIRGFGLIDLSTLEKPSRSWP
Sbjct: 241 ATIEKNRKIRGFGLIDLSTLEKPSRSWP 268

[Close]

BLAST of Carg24739 vs. NCBI nr
Match: KAF5823075.1 (hypothetical protein HanXRQr2_Chr01g0034301 [Helianthus annuus])

HSP 1 Score: 73.2 bits (178), Expect = 3.9e-09
Identity = 52/118 (44.07%), Postives = 62/118 (52.54%), Query Frame = 0


Query: 45  MVPFRRFSETSRITSSSQSPISSG------------IDSSNNIPIDEGRAPKIPVSARPN 104
           M P R FS  +  TSS Q PIS G            + S  ++PI  G+ P I VSA+P 
Sbjct: 1   MGPERLFSYRNNSTSSLQLPISGGNSPEIIAVYMDNVLSFVSLPIVLGKEPDILVSAKPR 60

Query: 105 MTKLLQFPISIGNLPSRSLFPPALKRLSFCNIPMLFGISPLISLSASLRYTRFERFPI 151
             +L QFPIS G  P RSL PPA    SF N PM  G+ P I LS   R+ RF + PI
Sbjct: 61  TVRLTQFPISSGIFPVRSLLPPARITSSFPNRPMSGGMLPEILLSNKKRFLRFLQLPI 118

The following BLAST results are available for this feature:

BLAST of Carg24739 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024988.1	8.6e-150	100.00	hypothetical protein SDJN02_13808, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAF5823075.1	3.9e-09	44.07	hypothetical protein HanXRQr2_Chr01g0034301 [Helianthus annuus]	[more]

BLAST of Carg24739 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24739 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24739 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24739-RA	Carg24739-RA	mRNA