Carg24733 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24733
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	sufE-like protein 1, chloroplastic/mitochondrial
Location	Carg_Chr09: 5795828 .. 5796944 (+)
RNA-Seq Expression	Carg24733
Synteny	Carg24733

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACCGTGACGGTTTTGAGAAGTTTGAGTTTGATTAAAATATGAGCACAAATAGGAAAAATACGTGGATGAACAACAAAATGCATAGAATACAATGAACTAGTCGTAACTGACCATGTTAACTCTATCCATGATCTTACAAAGGAGGAAGATAACAGTGATGTTGGAGAGGAAGAGGACAGTGATTCGGAGTGATTCTAAAATCTTTGCACTTGTTGCAATGTACTGAGGACAGGAGAAATCGAACTTGAAATGTAAATTCGTTTTGTCTCTACCAAAAAATTGATGGACCAAGTAGAATCCACTGTAGTCCGACATTGAAACCTCTCCCTCTTTTAAAACATGGAAGGGAAGCTAGGTGGGGTCGGTGGATTGTGAGATCACATCTTGGTTGGAGAGGGGAACAAAACATTCTTTAAAGAGTGTAGAAACTTCTCCCTATATTAAAACGCGGAAGGGATCACACTTTGGTTGGAAAGGGGAAAACGCGGAAGGGATCACACTTTGGTTGGAAAGGGGAACGGAAGGGAAAGCTCAAAAGAGTATAATATCTGAGGTTTTAGATAATTTTTTTTCACCAAAATTCTACGTTTCAAATTTTCATCTCAAATTATCTTCGCCCATAATTCTGGACTTTCTGCTCTGCTCAACCTTCAACGCCTTTCAAATCGATCTGTCGAGGAGGTTCTTAGGGTTTCTCCTGATTTTGTTGTTGTTCTTGGCCTTCAGCAGAGCTTAACGCCTTCTAGAAATAATGGTTCTTTGAATCTGTTGAAGTTGATGTAGAAGAAGGCGCTTGGGTTGCTTGTGGAATCCGAAAAAGGCAATGGCAGTGCGGTTTCATCGTCACAAACAGTTGATTCTGTCGAGAAAGTAAAATCAGAATCTAATACTGAGAAATCCGTTGAAGACTCGAAGTCGGAAGATAAAGGAAATCGCAGTTCTGATGTACGAGGAAGTAGAGGGAAGAGAATTAAGGAGAAACTCACTTTAATTTGAAGGCTGTGTCGAAGGAGTTAGAAGGCATAGGCTCGTTGATAATCTGTTGCAAGAAGATTTCCAGAGTGTACTGGACGTCCTAGCCATTTCAGCAAAGACACCTGATGAACTCTGA

mRNA sequence

ATGACGACCGTGACGAAGAAGGCGCTTGGGTTGCTTGTGGAATCCGAAAAAGGCAATGGCAGTGCGGTTTCATCGTCACAAACAGTTGATTCTGTCGAGAAAGTAAAATCAGAATCTAATACTGAGAAATCCGTTGAAGACTCGAAGTCGGAAGATAAAGGAAATCGCAGAGTTAGAAGGCATAGGCTCGTTGATAATCTGTTGCAAGAAGATTTCCAGAGTGTACTGGACGTCCTAGCCATTTCAGCAAAGACACCTGATGAACTCTGA

Coding sequence (CDS)

ATGACGACCGTGACGAAGAAGGCGCTTGGGTTGCTTGTGGAATCCGAAAAAGGCAATGGCAGTGCGGTTTCATCGTCACAAACAGTTGATTCTGTCGAGAAAGTAAAATCAGAATCTAATACTGAGAAATCCGTTGAAGACTCGAAGTCGGAAGATAAAGGAAATCGCAGAGTTAGAAGGCATAGGCTCGTTGATAATCTGTTGCAAGAAGATTTCCAGAGTGTACTGGACGTCCTAGCCATTTCAGCAAAGACACCTGATGAACTCTGA

Protein sequence

MTTVTKKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNRRVRRHRLVDNLLQEDFQSVLDVLAISAKTPDEL

Homology

[Close]

BLAST of Carg24733 vs. NCBI nr
Match: KAG7024994.1 (hypothetical protein SDJN02_13814, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159.5 bits (402), Expect = 1.4e-35
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MTTVTKKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNRRVRR 60
          MTTVTKKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNRRVRR
Sbjct: 1  MTTVTKKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNRRVRR 60

Query: 61 HRLVDNLLQEDFQSVLDVLAISAKTPDEL 90
          HRLVDNLLQEDFQSVLDVLAISAKTPDEL
Sbjct: 61 HRLVDNLLQEDFQSVLDVLAISAKTPDEL 89

[Close]

BLAST of Carg24733 vs. NCBI nr
Match: XP_038897655.1 (sufE-like protein 1, chloroplastic/mitochondrial [Benincasa hispida] >XP_038897656.1 sufE-like protein 1, chloroplastic/mitochondrial [Benincasa hispida] >XP_038897658.1 sufE-like protein 1, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 87.0 bits (214), Expect = 8.7e-14
Identity = 66/146 (45.21%), Postives = 73/146 (50.00%), Query Frame = 0


Query: 6   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDK------------ 65
           KKAL LLVESEKGNGSAVSSSQT DSVEKV++ESNTEKSVEDSK EDK            
Sbjct: 196 KKALALLVESEKGNGSAVSSSQTDDSVEKVEAESNTEKSVEDSKLEDKENHSSDILGSRG 255

Query: 66  --------------------------------------------------GNRRVRRHRL 90
                                                             G   V+RHRL
Sbjct: 256 KRIKEKLERELSPVELYVEDISYQHAGHAGVKGSDGETHFNLKVVSKEFEGKSLVKRHRL 315

[Close]

BLAST of Carg24733 vs. NCBI nr
Match: XP_004139770.1 (sufE-like protein 1, chloroplastic/mitochondrial [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 2.8e-12
Identity = 64/146 (43.84%), Postives = 71/146 (48.63%), Query Frame = 0


Query: 6   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNRR-------- 65
           KKAL LLVESEKGNGSAVSSSQT DS EKVK ESNTEKSV DSK  DKG++         
Sbjct: 197 KKALALLVESEKGNGSAVSSSQTDDSAEKVKPESNTEKSVVDSKLGDKGSQSSDVLGSRG 256

Query: 66  ------------------------------------------------------VRRHRL 90
                                                                 V+RHRL
Sbjct: 257 KRIKEILERELNPVELYVEDISYQHAGHAGVRGNDGETHFNLKVVSKEFEGKSLVKRHRL 316

[Close]

BLAST of Carg24733 vs. NCBI nr
Match: TYJ98710.1 (sufE-like protein 1 [Cucumis melo var. makuwa] >TYK23198.1 sufE-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-11
Identity = 63/146 (43.15%), Postives = 70/146 (47.95%), Query Frame = 0


Query: 6   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNRR-------- 65
           KKAL LLVESEKGNGSAVSSSQT  SVEK + ESNTEKSV DSK  DKGN+         
Sbjct: 200 KKALALLVESEKGNGSAVSSSQTDYSVEKAEPESNTEKSVVDSKLGDKGNQSSDVLGSRG 259

Query: 66  ------------------------------------------------------VRRHRL 90
                                                                 V+RHRL
Sbjct: 260 KRIKEILERELNPVELYVEDISYQHAGHAGVRGSDGETHFNLKVVSKEFEGKSLVKRHRL 319

[Close]

BLAST of Carg24733 vs. NCBI nr
Match: XP_008447788.1 (PREDICTED: LOW QUALITY PROTEIN: sufE-like protein 1, chloroplastic/mitochondrial [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-11
Identity = 63/146 (43.15%), Postives = 70/146 (47.95%), Query Frame = 0


Query: 6   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNRR-------- 65
           KKAL LLVESEKGNGSAVSSSQT  SVEK + ESNTEKSV DSK  DKGN+         
Sbjct: 200 KKALALLVESEKGNGSAVSSSQTDYSVEKAEPESNTEKSVVDSKLGDKGNQSSDVLGSRG 259

Query: 66  ------------------------------------------------------VRRHRL 90
                                                                 V+RHRL
Sbjct: 260 KRIKEILERELNPVELYVEDISYQHAGHAGVRGSDGETHFNLKVVSKEFEGKSLVKRHRL 319

[Close]

BLAST of Carg24733 vs. ExPASy TrEMBL
Match: A0A0A0K8K1 (SufE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G193760 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 64/146 (43.84%), Postives = 71/146 (48.63%), Query Frame = 0


Query: 6   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNRR-------- 65
           KKAL LLVESEKGNGSAVSSSQT DS EKVK ESNTEKSV DSK  DKG++         
Sbjct: 247 KKALALLVESEKGNGSAVSSSQTDDSAEKVKPESNTEKSVVDSKLGDKGSQSSDVLGSRG 306

Query: 66  ------------------------------------------------------VRRHRL 90
                                                                 V+RHRL
Sbjct: 307 KRIKEILERELNPVELYVEDISYQHAGHAGVRGNDGETHFNLKVVSKEFEGKSLVKRHRL 366

[Close]

BLAST of Carg24733 vs. ExPASy TrEMBL
Match: A0A5D3BG00 (SufE-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002300 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.8e-12
Identity = 63/146 (43.15%), Postives = 70/146 (47.95%), Query Frame = 0


Query: 6   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNRR-------- 65
           KKAL LLVESEKGNGSAVSSSQT  SVEK + ESNTEKSV DSK  DKGN+         
Sbjct: 200 KKALALLVESEKGNGSAVSSSQTDYSVEKAEPESNTEKSVVDSKLGDKGNQSSDVLGSRG 259

Query: 66  ------------------------------------------------------VRRHRL 90
                                                                 V+RHRL
Sbjct: 260 KRIKEILERELNPVELYVEDISYQHAGHAGVRGSDGETHFNLKVVSKEFEGKSLVKRHRL 319

[Close]

BLAST of Carg24733 vs. ExPASy TrEMBL
Match: A0A1S3BJ54 (LOW QUALITY PROTEIN: sufE-like protein 1, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490176 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.8e-12
Identity = 63/146 (43.15%), Postives = 70/146 (47.95%), Query Frame = 0


Query: 6   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNRR-------- 65
           KKAL LLVESEKGNGSAVSSSQT  SVEK + ESNTEKSV DSK  DKGN+         
Sbjct: 200 KKALALLVESEKGNGSAVSSSQTDYSVEKAEPESNTEKSVVDSKLGDKGNQSSDVLGSRG 259

Query: 66  ------------------------------------------------------VRRHRL 90
                                                                 V+RHRL
Sbjct: 260 KRIKEILERELNPVELYVEDISYQHAGHAGVRGSDGETHFNLKVVSKEFEGKSLVKRHRL 319

[Close]

BLAST of Carg24733 vs. ExPASy TrEMBL
Match: A0A6J1FMC1 (sufE-like protein 1, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111446705 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.3e-09
Identity = 59/148 (39.86%), Postives = 70/148 (47.30%), Query Frame = 0


Query: 6   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNT--EKSVEDSKSEDKGNRR------ 65
           +KALGLLVESEKGNGSA+SSSQ  D+VEKV+S+S T  EK  E+SK  DKG+        
Sbjct: 225 RKALGLLVESEKGNGSAISSSQIDDAVEKVESDSKTDAEKPNEESKLGDKGSDNSSVLGS 284

Query: 66  --------------------------------------------------------VRRH 90
                                                                   V+RH
Sbjct: 285 RGKRIKEKLEKDLSPVELNVEDISYQHAGHAGVRGSDGETHFNLKVVSKEFEGKSLVKRH 344

[Close]

BLAST of Carg24733 vs. ExPASy TrEMBL
Match: A0A6J1J2B6 (sufE-like protein 1, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111480607 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-08
Identity = 59/148 (39.86%), Postives = 69/148 (46.62%), Query Frame = 0


Query: 6   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNT--EKSVEDSKSEDKGNRR------ 65
           +KALGLLVESEKGN SA+SSSQ  D+VEKVKS+S T  EK  E+SK  DKG+        
Sbjct: 225 RKALGLLVESEKGNDSAISSSQIDDAVEKVKSDSETDAEKPNEESKLGDKGSDNSGVLGS 284

Query: 66  --------------------------------------------------------VRRH 90
                                                                   V+RH
Sbjct: 285 RGKRIKEKLETELNPVELNVEDISYQHAGHAGVRGSDGETHFNLKVVSKEFEGKSLVKRH 344

The following BLAST results are available for this feature:

BLAST of Carg24733 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024994.1	1.4e-35	100.00	hypothetical protein SDJN02_13814, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038897655.1	8.7e-14	45.21	sufE-like protein 1, chloroplastic/mitochondrial [Benincasa hispida] >XP_0388976...	[more]
XP_004139770.1	2.8e-12	43.84	sufE-like protein 1, chloroplastic/mitochondrial [Cucumis sativus]	[more]
TYJ98710.1	1.8e-11	43.15	sufE-like protein 1 [Cucumis melo var. makuwa] >TYK23198.1 sufE-like protein 1 [...	[more]
XP_008447788.1	1.8e-11	43.15	PREDICTED: LOW QUALITY PROTEIN: sufE-like protein 1, chloroplastic/mitochondrial...	[more]

BLAST of Carg24733 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24733 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8K1	1.4e-12	43.84	SufE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G193760 PE=4 S...	[more]
A0A5D3BG00	8.8e-12	43.15	SufE-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G...	[more]
A0A1S3BJ54	8.8e-12	43.15	LOW QUALITY PROTEIN: sufE-like protein 1, chloroplastic/mitochondrial OS=Cucumis...	[more]
A0A6J1FMC1	5.3e-09	39.86	sufE-like protein 1, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1J2B6	1.2e-08	39.86	sufE-like protein 1, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of Carg24733 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002634	BolA protein	PFAM	PF01722	BolA	coord: 53..88 e-value: 6.3E-6 score: 26.4
IPR036065	BolA-like superfamily	GENE3D	3.30.300.90		coord: 4..89 e-value: 3.6E-6 score: 29.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24733-RA	Carg24733-RA	mRNA