Carg24386 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24386
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionMediator of RNA polymerase II transcription subunit 11
LocationCarg_Chr13: 4372339 .. 4374813 (-)
RNA-Seq ExpressionCarg24386
SyntenyCarg24386
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAATTGTTCACATGGGACTCTGTTGGTTGGAAGTTGATTATTCCACTGCGGTTGGGGTTGTTGCAGGTGGTCGGGGTTGTCGTGTGGTCGAGACTAGTTGATGATATACTCTGTTTCACTTCAGAGGCCACTTGGAGTGTTGGCAATAGAGAGAGTGGAGTCAGGAAAACAACTTGAAAAGCTGCTAAGACTTGTCGGAAACTTTGTTCATGTAGATCTCTTTGTCAGTTGGTAGTTGGTTGTCGCACGGTGGTCAATGGTTGGGGTTGTCACAGTGACCTGGGTTTTTGCGTGGTCACATGGAACCTTAGGTTAAAATTACTTCTGGTTTTCCTAATACTAAGCACATTTCTCTCGTGTCTGATCACATTTTCCATCATGGGAGAAAGGATTCCAAGTATTCGGCTCCTAAGGTGTTACGGGGTTTCTCCTGTAACGTTTTTTCATTTTATTTGTTCTCTCCCTTCTTGGGTACCTCTGCATTTTCCTCTCTTTAGTAGGTTGAAATTCCTAAAAAGCGAAATTCTTGGCTAGCTCTGAAGGGAGAGTGAACACGCAAGATTATCTTGAAAGACATTCATCATTAGTGTAGAATCAGCAATAGTGTGTTTGTTGGAAAGGAGGATGATCTTGACTATCTTATGTGGAATTGTCCTTTTGCTTTTCTCATTTGGAGTCGATTTTTCAGGACTTTCGCATTTGCTTTAGCAACATGGTTTCTCTTTGATCGGGAAGGTATGATAGAGGAAGAATTTCATGGCAACTTCACTTTGATTAGTTTTTGTTTTTAAAGAATATTATTATATTAATTTTAGTCCGATCAGAAGTTCAAATAAAGTTTTACTACAAAAAGTGCTCTCCCCCGTTTCTGGTTCCTGCCAGAAAAAATGTGGAATGATTGTGTTTAGTATCACTGGGTATTCGGGATTTTGGTGGTCGTTACGTAATGACAGTTAATTTCTCGTTAGATTGTTAGGTGAGTCGGTTAGGAGTCGGGATTGTCGAGGAAGGATATTATTGCTGATTGATATCTCAATTTGTTACCATTTGGCTCACGTAACCGGGTTCCTAGCAGATTGTAGAGAATAATTAAAGAATAATTGTTGTGTGGCTGGTATGCTTTTTTAGTACTGTTCAAGGATGGGGCATCTTTATCAAAAGTGTCAAGTCAATGCAATCCTATATTTCACCTAAATCTTTGAATTATATTTGAGGAATAATGATATTTGAAACATTTTGTCCTCCTTGAAATCAGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCGTGTGAATATCGTCCATTCGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATACATGATTTCGAAGTTGGATGGAATGAAGCAAACCATTGATGAATATCAAGTGAAAATGGAAGATTCTTGAGGTAAATGTCGCAGTGAGCTGCCAATCTAACTATTTTCCATTTTTCCCATACAATGTTGTAGAAACGTAGGTTGATGGGGGAAACTAGGTAGAGCTAATAGCATCCACTTATGACTAGTCGGCTCATACCAAAATCCTGCTGTATTCTTAAACTATCCATTGTTTTCCTTTTAATCTGTGGTCTCTTCTATATTTGATATAGGTCATGTCTTATTGGATGTATTCATTTTCTTTCATTTGTTTGCATCGAGGAGTTGCCGGCTGAACTACGAAATCTCACATCGGGTGGGGAGGAGTACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTACCTAGCATACACGTTTTAAAAACCTTGTGGGGAAGCCTGAAAGGGAAATCCCAAAGAGGACAATATCGGTTGGTGGTGGGTTTGGACTATTATAAATGGTGTCAGAGCTAGACACCGGGCGATGTGCCAACAAGGAGGCTGAGCACCAAAGGGGGTGGACAAGAGGTGGTGTGCTAGCAAGGATGTTGGGCCTTGAAAGGGGGTGGATTGGTGAGTCCCACATCGATTGGAGAAGGGAACAAATGCCAGCAAAGACGCTGGGCCCTGAAGAGGGGGGGGGGGGGTGGATTGTGAAATCCCACATCTGGTTGGGGAGGAGAACGAAACATTTTTTACAAGAGTGTGGAAACCTCTCTCGAGCAGACACGTTTTAAAACCTTGAGGGGGAAGCCCAAAAAAGAAAGTCTATAGAAGACAATATTTGCTAGCAGTAGGTTTAGGTCGTTACACGAATAAAGTCAAGTATTCAGAATTGAATTTTAATGTTCGAATGATTGAAGTAGAAACGCCTGCAGGGATTCTTAGACTGCTTTATCTGTTTTATGTGTTCTTGAGAGAATATTAGCAACACACTGTATATGCATACACTTTGTCTGGAGGAATTCTTTTTTTTTTTGTAGGCAGGCCTTATCTTTGTCACATACTATATACATCTCTCGTGTCGTGACTTTAATGACTAGCTTCATCGACCTATGA

mRNA sequence

ATGGAAGAATTGTTCACATGGGACTCTGTTGGTTGGAAGTTGATTATTCCACTGCGGTTGGGGTTGTTGCAGAGGCCACTTGGAGTGTTGGCAATAGAGAGAGTGGAGTCAGGAAAACAACTTGAAAAGCTGCTAAGACTTGTCGGAAACTTTGTTCATTTGGTAGTTGGTTGTCGCACGGTGGTCAATGGTTGGGGTTGTCACAGTGACCTGGGTTTTTGCGTGGTCACATGGAACCTTAGGACTTTCGCATTTGCTTTAGCAACATGGTTTCTCTTTGATCGGGAAGTCCGATCAGAAGTTCAAATAAAGTTTTACTACAAAAAGTGCTCTCCCCCGTTTCTGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCGTGTGAATATCGTCCATTCGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATACATGATTTCGAAGTTGGATGGAATGAAGCAAACCATTGATGAATATCAAGCCTTATCTTTGTCACATACTATATACATCTCTCGTGTCGTGACTTTAATGACTAGCTTCATCGACCTATGA

Coding sequence (CDS)

ATGGAAGAATTGTTCACATGGGACTCTGTTGGTTGGAAGTTGATTATTCCACTGCGGTTGGGGTTGTTGCAGAGGCCACTTGGAGTGTTGGCAATAGAGAGAGTGGAGTCAGGAAAACAACTTGAAAAGCTGCTAAGACTTGTCGGAAACTTTGTTCATTTGGTAGTTGGTTGTCGCACGGTGGTCAATGGTTGGGGTTGTCACAGTGACCTGGGTTTTTGCGTGGTCACATGGAACCTTAGGACTTTCGCATTTGCTTTAGCAACATGGTTTCTCTTTGATCGGGAAGTCCGATCAGAAGTTCAAATAAAGTTTTACTACAAAAAGTGCTCTCCCCCGTTTCTGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCGTGTGAATATCGTCCATTCGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATACATGATTTCGAAGTTGGATGGAATGAAGCAAACCATTGATGAATATCAAGCCTTATCTTTGTCACATACTATATACATCTCTCGTGTCGTGACTTTAATGACTAGCTTCATCGACCTATGA

Protein sequence

MEELFTWDSVGWKLIIPLRLGLLQRPLGVLAIERVESGKQLEKLLRLVGNFVHLVVGCRTVVNGWGCHSDLGFCVVTWNLRTFAFALATWFLFDREVRSEVQIKFYYKKCSPPFLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQALSLSHTIYISRVVTLMTSFIDL
Homology
[Close]
BLAST of Carg24386 vs. NCBI nr
Match: KAG7019332.1 (Mediator of RNA polymerase II transcription subunit 11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 397.5 bits (1020), Expect = 6.5e-107
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0 

Query: 1   MEELFTWDSVGWKLIIPLRLGLLQRPLGVLAIERVESGKQLEKLLRLVGNFVHLVVGCRT 60
           MEELFTWDSVGWKLIIPLRLGLLQRPLGVLAIERVESGKQLEKLLRLVGNFVHLVVGCRT
Sbjct: 1   MEELFTWDSVGWKLIIPLRLGLLQRPLGVLAIERVESGKQLEKLLRLVGNFVHLVVGCRT 60

Query: 61  VVNGWGCHSDLGFCVVTWNLRTFAFALATWFLFDREVRSEVQIKFYYKKCSPPFLDIQVT 120
           VVNGWGCHSDLGFCVVTWNLRTFAFALATWFLFDREVRSEVQIKFYYKKCSPPFLDIQVT
Sbjct: 61  VVNGWGCHSDLGFCVVTWNLRTFAFALATWFLFDREVRSEVQIKFYYKKCSPPFLDIQVT 120

Query: 121 LRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQALSLSHTIYI 180
           LRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQALSLSHTIYI
Sbjct: 121 LRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQALSLSHTIYI 180

Query: 181 SRVVTLMTSFIDL 194
           SRVVTLMTSFIDL
Sbjct: 181 SRVVTLMTSFIDL 193

[Close]
BLAST of Carg24386 vs. NCBI nr
Match: XP_023520390.1 (mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023520391.1 mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.2 bits (295), Expect = 7.6e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 116 DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 171
           DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
Sbjct: 94  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 148

[Close]
BLAST of Carg24386 vs. NCBI nr
Match: XP_022142440.1 (mediator of RNA polymerase II transcription subunit 11 [Momordica charantia] >XP_022142441.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia])

HSP 1 Score: 118.2 bits (295), Expect = 7.6e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 116 DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 171
           DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
Sbjct: 58  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 112

[Close]
BLAST of Carg24386 vs. NCBI nr
Match: XP_022927635.1 (mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita moschata] >XP_022927636.1 mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita moschata] >XP_022927637.1 mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita moschata] >XP_022927638.1 mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita moschata])

HSP 1 Score: 118.2 bits (295), Expect = 7.6e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 116 DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 171
           DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
Sbjct: 94  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 148

[Close]
BLAST of Carg24386 vs. NCBI nr
Match: XP_022927640.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >XP_022927641.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >KAG6583673.1 Mediator of RNA polymerase II transcription subunit 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.2 bits (295), Expect = 7.6e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 116 DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 171
           DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
Sbjct: 58  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 112

[Close]
BLAST of Carg24386 vs. ExPASy Swiss-Prot
Match: Q6ID77 (Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana OX=3702 GN=MED11 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.8e-17
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 116 DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEY 170
           DIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Sbjct: 58  DIQVTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

[Close]
BLAST of Carg24386 vs. ExPASy TrEMBL
Match: A0A6J1CKY4 (Mediator of RNA polymerase II transcription subunit 11 OS=Momordica charantia OX=3673 GN=LOC111012572 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.7e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 116 DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 171
           DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
Sbjct: 58  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 112

[Close]
BLAST of Carg24386 vs. ExPASy TrEMBL
Match: A0A6J1EPI6 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111434405 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.7e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 116 DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 171
           DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
Sbjct: 94  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 148

[Close]
BLAST of Carg24386 vs. ExPASy TrEMBL
Match: A0A6J1EPJ1 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111434405 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.7e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 116 DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 171
           DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
Sbjct: 58  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 112

[Close]
BLAST of Carg24386 vs. ExPASy TrEMBL
Match: A0A0A0L450 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=3659 GN=MED11 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.7e-23
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 115 LDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 171
           LDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SKLDGMKQTID+YQ
Sbjct: 79  LDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQ 134

[Close]
BLAST of Carg24386 vs. ExPASy TrEMBL
Match: A0A1S3B5G7 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 GN=LOC103486032 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 8.2e-23
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 116 DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ 171
           DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID+YQ
Sbjct: 58  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQ 112

[Close]
BLAST of Carg24386 vs. TAIR 10
Match: AT3G01435.1 (Expressed protein )

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-18
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 116 DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEY 170
           DIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Sbjct: 58  DIQVTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

The following BLAST results are available for this feature:
BLAST of Carg24386 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019332.16.5e-107100.00Mediator of RNA polymerase II transcription subunit 11, partial [Cucurbita argyr... [more]
XP_023520390.17.6e-23100.00mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita pep... [more]
XP_022142440.17.6e-23100.00mediator of RNA polymerase II transcription subunit 11 [Momordica charantia] >XP... [more]
XP_022927635.17.6e-23100.00mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita mos... [more]
XP_022927640.17.6e-23100.00mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita mos... [more]
BLAST of Carg24386 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6ID773.8e-1770.37Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana O... [more]
BLAST of Carg24386 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CKY43.7e-23100.00Mediator of RNA polymerase II transcription subunit 11 OS=Momordica charantia OX... [more]
A0A6J1EPI63.7e-23100.00Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=... [more]
A0A6J1EPJ13.7e-23100.00Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=... [more]
A0A0A0L4503.7e-2396.43Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=365... [more]
A0A1S3B5G78.2e-2398.18Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 G... [more]
BLAST of Carg24386 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G01435.12.7e-1870.37Expressed protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019404Mediator complex, subunit Med11PANTHERPTHR22890UNCHARACTERIZEDcoord: 116..171
NoneNo IPR availablePANTHERPTHR22890:SF2MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 11coord: 116..171

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24386-RACarg24386-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016592 mediator complex
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003712 transcription coregulator activity