Carg24246 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24246
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription repressor KAN1-like isoform X1
LocationCarg_Chr14: 4656622 .. 4657085 (+)
RNA-Seq ExpressionCarg24246
SyntenyCarg24246
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTATCTAGCTTGGGCTGAGTGTGTAAGATCAAAACGTGCGCTTCTAGAATGGCTCGAGGTCATTGAGCCAAAAAGGCATCCTAAGAGCGCTGGGTCCGATTCGGGATTCTACCTTGTTTCTAAATCTTCATTTTGTGTATCTTAGAAATGAATTTTGTTTTTGTGGGTGTTCCTCAAATACAATCATGTTGTTTTGTGCTTCATTTTGCAGAGATGTTTGGGCAGAAACAAACGGCAATGAAATGGATGTGATTAGGCCAAGTTTGTATGCCAAAATGCAGCAGAAATGCATGCACCAAATTCAGGTAGCCTTATATAGCATGTATGGGAGTGATTGTTGTTAATTTTAAAGATGAAAAAAGTGTGGGAGAATTTGAACAAAGTATATGACAGGAATGTGATTCAGGTGCAATGAAGAAATACAATTCAGAATGCTGCAACAAACCAAGCTTGGAGTTC

mRNA sequence

ATGTCTTATCTAGCTTGGGCTGAGTGTGTAAGATCAAAACGTGCGCTTCTAGAATGGCTCGAGGTCATTGAGCCAAAAAGGCATCCTAAGAGCGCTGGAGATGTTTGGGCAGAAACAAACGGCAATGAAATGGATGTGATTAGGCCAAGTTTGTATGCCAAAATGCAGCAGAAATGCATGCACCAAATTCAGGAATGTGATTCAGGTGCAATGAAGAAATACAATTCAGAATGCTGCAACAAACCAAGCTTGGAGTTC

Coding sequence (CDS)

ATGTCTTATCTAGCTTGGGCTGAGTGTGTAAGATCAAAACGTGCGCTTCTAGAATGGCTCGAGGTCATTGAGCCAAAAAGGCATCCTAAGAGCGCTGGAGATGTTTGGGCAGAAACAAACGGCAATGAAATGGATGTGATTAGGCCAAGTTTGTATGCCAAAATGCAGCAGAAATGCATGCACCAAATTCAGGAATGTGATTCAGGTGCAATGAAGAAATACAATTCAGAATGCTGCAACAAACCAAGCTTGGAGTTC

Protein sequence

MSYLAWAECVRSKRALLEWLEVIEPKRHPKSAGDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF
Homology
[Close]
BLAST of Carg24246 vs. NCBI nr
Match: KAG7017969.1 (hypothetical protein SDJN02_19835, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.4 bits (472), Expect = 1.0e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MSYLAWAECVRSKRALLEWLEVIEPKRHPKSAGDVWAETNGNEMDVIRPSLYAKMQQKCM 60
          MSYLAWAECVRSKRALLEWLEVIEPKRHPKSAGDVWAETNGNEMDVIRPSLYAKMQQKCM
Sbjct: 1  MSYLAWAECVRSKRALLEWLEVIEPKRHPKSAGDVWAETNGNEMDVIRPSLYAKMQQKCM 60

Query: 61 HQIQECDSGAMKKYNSECCNKPSLEF 87
          HQIQECDSGAMKKYNSECCNKPSLEF
Sbjct: 61 HQIQECDSGAMKKYNSECCNKPSLEF 86

[Close]
BLAST of Carg24246 vs. NCBI nr
Match: XP_022934718.1 (transcription repressor KAN1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-23
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 31  SAGDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 87
           S+ DVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF
Sbjct: 348 SSRDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 403

[Close]
BLAST of Carg24246 vs. NCBI nr
Match: XP_022934721.1 (transcription repressor KAN1-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-23
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 31  SAGDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 87
           S+ DVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF
Sbjct: 307 SSRDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 362

[Close]
BLAST of Carg24246 vs. NCBI nr
Match: XP_022934722.1 (transcription repressor KAN1-like isoform X5 [Cucurbita moschata])

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-23
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 31  SAGDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 87
           S+ DVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF
Sbjct: 306 SSRDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 361

[Close]
BLAST of Carg24246 vs. NCBI nr
Match: XP_022934724.1 (transcription repressor KAN1-like isoform X6 [Cucurbita moschata] >XP_022934725.1 transcription repressor KAN1-like isoform X6 [Cucurbita moschata])

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-23
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 31  SAGDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 87
           S+ DVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF
Sbjct: 248 SSRDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 303

[Close]
BLAST of Carg24246 vs. ExPASy TrEMBL
Match: A0A6J1F3E1 (transcription repressor KAN1-like isoform X6 OS=Cucurbita moschata OX=3662 GN=LOC111441819 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.4e-24
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 31  SAGDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 87
           S+ DVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF
Sbjct: 248 SSRDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 303

[Close]
BLAST of Carg24246 vs. ExPASy TrEMBL
Match: A0A6J1F3L6 (transcription repressor KAN1-like isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111441819 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.4e-24
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 31  SAGDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 87
           S+ DVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF
Sbjct: 306 SSRDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 361

[Close]
BLAST of Carg24246 vs. ExPASy TrEMBL
Match: A0A6J1F8J1 (transcription repressor KAN1-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111441819 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.4e-24
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 31  SAGDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 87
           S+ DVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF
Sbjct: 313 SSRDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 368

[Close]
BLAST of Carg24246 vs. ExPASy TrEMBL
Match: A0A6J1F2L2 (transcription repressor KAN1-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111441819 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.4e-24
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 31  SAGDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 87
           S+ DVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF
Sbjct: 307 SSRDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 362

[Close]
BLAST of Carg24246 vs. ExPASy TrEMBL
Match: A0A6J1F8G0 (transcription repressor KAN1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441819 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.4e-24
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 31  SAGDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 87
           S+ DVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF
Sbjct: 348 SSRDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 403

The following BLAST results are available for this feature:
BLAST of Carg24246 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017969.11.0e-43100.00hypothetical protein SDJN02_19835, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022934718.11.5e-2396.43transcription repressor KAN1-like isoform X1 [Cucurbita moschata][more]
XP_022934721.11.5e-2396.43transcription repressor KAN1-like isoform X4 [Cucurbita moschata][more]
XP_022934722.11.5e-2396.43transcription repressor KAN1-like isoform X5 [Cucurbita moschata][more]
XP_022934724.11.5e-2396.43transcription repressor KAN1-like isoform X6 [Cucurbita moschata] >XP_022934725.... [more]
BLAST of Carg24246 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24246 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F3E17.4e-2496.43transcription repressor KAN1-like isoform X6 OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1F3L67.4e-2496.43transcription repressor KAN1-like isoform X5 OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1F8J17.4e-2496.43transcription repressor KAN1-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1F2L27.4e-2496.43transcription repressor KAN1-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1F8G07.4e-2496.43transcription repressor KAN1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LO... [more]
BLAST of Carg24246 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24246-RACarg24246-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010158 abaxial cell fate specification
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0000976 transcription cis-regulatory region binding