Carg24221 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24221
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	BEST Arabidopsis thaliana protein match is: s in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Location	Carg_Chr12: 8195995 .. 8196549 (+)
RNA-Seq Expression	Carg24221
Synteny	Carg24221

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACAACTTTTCATTGGGATGTGAAGAACAAAGTGATATCAAGAACATCTTCAATTGGTTGCTCTTCTCGCAGCATTTACTATTGTGGAACACCTGAAGGTGTCCCTTTCAAATGGGAAACACAGCCAGGAACTCCCAAAGATCCACCCCCTCAAGACATGCTTCCGCCCCTCACCCCTCCCCCGGCGGTTCTCAGTCTCGGGTTACCGAAACCGTGCATCGAACAACCGAAAACCCGACCTCGACCCCTGATAAGGCTTCGGTTTTGGAGGAGAAGCAAGAAGAATGGTAAGAGAGATGCCCGAGCTAGAACTATTGACTATAGTAATGAAGATCGTTTTGGTAACCCTGATAAGTTGGAGACGTTTTCGTTTCTTAGCTCTGATTGTGAGTTCATGACATCGTCTCGGAATTCTATGTTGTCGTCGCCGTCGTTGTCTTTGTCTTCTTCTTCATCACCATCGTCATTCTTCGAGTCGTTAACTGTACGTCGACGTCTGAGTTGTAATGCTTGGCAAATTAACCGGATTCTAGCTTGTTACCATTGCTAG

mRNA sequence

ATGGATACAACTTTTCATTGGGATGTGAAGAACAAAGTGATATCAAGAACATCTTCAATTGGTTGCTCTTCTCGCAGCATTTACTATTGTGGAACACCTGAAGGTGTCCCTTTCAAATGGGAAACACAGCCAGGAACTCCCAAAGATCCACCCCCTCAAGACATGCTTCCGCCCCTCACCCCTCCCCCGGCGGTTCTCAGTCTCGGGTTACCGAAACCGTGCATCGAACAACCGAAAACCCGACCTCGACCCCTGATAAGGCTTCGGTTTTGGAGGAGAAGCAAGAAGAATGGTAAGAGAGATGCCCGAGCTAGAACTATTGACTATAGTAATGAAGATCGTTTTGGTAACCCTGATAAGTTGGAGACGTTTTCGTTTCTTAGCTCTGATTGTGAGTTCATGACATCGTCTCGGAATTCTATGTTGTCGTCGCCGTCGTTGTCTTTGTCTTCTTCTTCATCACCATCGTCATTCTTCGAGTCGTTAACTGTACGTCGACGTCTGAGTTGTAATGCTTGGCAAATTAACCGGATTCTAGCTTGTTACCATTGCTAG

Coding sequence (CDS)

ATGGATACAACTTTTCATTGGGATGTGAAGAACAAAGTGATATCAAGAACATCTTCAATTGGTTGCTCTTCTCGCAGCATTTACTATTGTGGAACACCTGAAGGTGTCCCTTTCAAATGGGAAACACAGCCAGGAACTCCCAAAGATCCACCCCCTCAAGACATGCTTCCGCCCCTCACCCCTCCCCCGGCGGTTCTCAGTCTCGGGTTACCGAAACCGTGCATCGAACAACCGAAAACCCGACCTCGACCCCTGATAAGGCTTCGGTTTTGGAGGAGAAGCAAGAAGAATGGTAAGAGAGATGCCCGAGCTAGAACTATTGACTATAGTAATGAAGATCGTTTTGGTAACCCTGATAAGTTGGAGACGTTTTCGTTTCTTAGCTCTGATTGTGAGTTCATGACATCGTCTCGGAATTCTATGTTGTCGTCGCCGTCGTTGTCTTTGTCTTCTTCTTCATCACCATCGTCATTCTTCGAGTCGTTAACTGTACGTCGACGTCTGAGTTGTAATGCTTGGCAAATTAACCGGATTCTAGCTTGTTACCATTGCTAG

Protein sequence

MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLTPPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDKLETFSFLSSDCEFMTSSRNSMLSSPSLSLSSSSSPSSFFESLTVRRRLSCNAWQINRILACYHC

Homology

[Close]

BLAST of Carg24221 vs. NCBI nr
Match: KAG7020906.1 (hypothetical protein SDJN02_17594, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 369.8 bits (948), Expect = 1.4e-98
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT 60
           MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT
Sbjct: 1   MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT 60

Query: 61  PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDK 120
           PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDK
Sbjct: 61  PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDK 120

Query: 121 LETFSFLSSDCEFMTSSRNSMLSSPSLSLSSSSSPSSFFESLTVRRRLSCNAWQINRILA 180
           LETFSFLSSDCEFMTSSRNSMLSSPSLSLSSSSSPSSFFESLTVRRRLSCNAWQINRILA
Sbjct: 121 LETFSFLSSDCEFMTSSRNSMLSSPSLSLSSSSSPSSFFESLTVRRRLSCNAWQINRILA 180

Query: 181 CYHC 185
           CYHC
Sbjct: 181 CYHC 184

[Close]

BLAST of Carg24221 vs. NCBI nr
Match: KAG7020905.1 (hypothetical protein SDJN02_17593, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 364.4 bits (934), Expect = 5.8e-97
Identity = 181/184 (98.37%), Postives = 183/184 (99.46%), Query Frame = 0


Query: 1   MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT 60
           MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT
Sbjct: 1   MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT 60

Query: 61  PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDK 120
           PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFG+PDK
Sbjct: 61  PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGHPDK 120

Query: 121 LETFSFLSSDCEFMTSSRNSMLSSPSLSLSSSSSPSSFFESLTVRRRLSCNAWQINRILA 180
           LETFSFLSSDCEFMTSSRNSM SSPSLSLSSSSSPSSFFESLTVRRRL+CNAWQINRILA
Sbjct: 121 LETFSFLSSDCEFMTSSRNSMSSSPSLSLSSSSSPSSFFESLTVRRRLNCNAWQINRILA 180

Query: 181 CYHC 185
           CYHC
Sbjct: 181 CYHC 184

[Close]

BLAST of Carg24221 vs. NCBI nr
Match: XP_022938321.1 (putative protein TPRXL [Cucurbita moschata])

HSP 1 Score: 357.8 bits (917), Expect = 5.5e-95
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT 60
           MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT
Sbjct: 1   MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT 60

Query: 61  PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDK 120
           PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDK
Sbjct: 61  PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDK 120

Query: 121 LETFSFLSSDCEFMTSSRNSMLSSPSLSLSSSSSPSSFFESLTVRRRLSCNAWQINRILA 180
           LETFSFLSSDCEFMTSSRNSMLSSPSLSLSSSSSPSSFFESLTVRRRLSCNAWQINRILA
Sbjct: 121 LETFSFLSSDCEFMTSSRNSMLSSPSLSLSSSSSPSSFFESLTVRRRLSCNAWQINRILA 180

[Close]

BLAST of Carg24221 vs. NCBI nr
Match: KAG6586081.1 (Transcription initiation factor TFIID subunit 4b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 324.3 bits (830), Expect = 6.7e-85
Identity = 164/167 (98.20%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT 60
           MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT
Sbjct: 1   MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT 60

Query: 61  PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDK 120
           PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFG+PDK
Sbjct: 61  PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGHPDK 120

Query: 121 LETFSFLSSDCEFMTSSRNSMLSSPSLSLSSSSSPSSFFESLTVRRR 168
           LETFSFLSSDCEFMTSSRNSM  SPSLSLSSSSSPSSFFESLTVRRR
Sbjct: 121 LETFSFLSSDCEFMTSSRNSMSLSPSLSLSSSSSPSSFFESLTVRRR 167

[Close]

BLAST of Carg24221 vs. NCBI nr
Match: XP_022929606.1 (uncharacterized protein LOC111436141 [Cucurbita moschata])

HSP 1 Score: 240.7 bits (613), Expect = 9.7e-60
Identity = 136/194 (70.10%), Postives = 151/194 (77.84%), Query Frame = 0


Query: 1   MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT 60
           MD  FHWD+K+KVI+RTSSIGCSSRS YYCG  EGVPFKWETQPGTPKDPPPQD+LPPL+
Sbjct: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60

Query: 61  PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKK--NGKRDARARTIDYSNEDRFGNP 120
           PPPAV+SLGLP PCIE+PKTRPRP ++L FWRR KK  +G R A+A TIDYSN       
Sbjct: 61  PPPAVISLGLPLPCIEKPKTRPRPTMKLWFWRRVKKSRDGGRAAQATTIDYSN------- 120

Query: 121 DKLETFSFLSSDCEFMTSSRNSMLSSPSLSLSSSSSPSSFFESLTVR--------RRLSC 180
           DKLETFSFLSSDCEFM S R+SM SS     SSSSSPSS  ESLTVR        R  SC
Sbjct: 121 DKLETFSFLSSDCEFMASPRDSMSSS-----SSSSSPSSLIESLTVRNMGRVSLGRPSSC 180

Query: 181 N-AWQINRILACYH 184
           + A +I+RILACYH
Sbjct: 181 STAGKIHRILACYH 182

[Close]

BLAST of Carg24221 vs. ExPASy TrEMBL
Match: A0A6J1FCU1 (Uncharacterized protein OS=Cucurbita moschata OX=3662 GN=LOC111444457 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.6e-95
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT 60
           MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT
Sbjct: 1   MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT 60

Query: 61  PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDK 120
           PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDK
Sbjct: 61  PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDK 120

Query: 121 LETFSFLSSDCEFMTSSRNSMLSSPSLSLSSSSSPSSFFESLTVRRRLSCNAWQINRILA 180
           LETFSFLSSDCEFMTSSRNSMLSSPSLSLSSSSSPSSFFESLTVRRRLSCNAWQINRILA
Sbjct: 121 LETFSFLSSDCEFMTSSRNSMLSSPSLSLSSSSSPSSFFESLTVRRRLSCNAWQINRILA 180

[Close]

BLAST of Carg24221 vs. ExPASy TrEMBL
Match: A0A6J1ENL5 (uncharacterized protein LOC111436141 OS=Cucurbita moschata OX=3662 GN=LOC111436141 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.7e-60
Identity = 136/194 (70.10%), Postives = 151/194 (77.84%), Query Frame = 0


Query: 1   MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT 60
           MD  FHWD+K+KVI+RTSSIGCSSRS YYCG  EGVPFKWETQPGTPKDPPPQD+LPPL+
Sbjct: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60

Query: 61  PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKK--NGKRDARARTIDYSNEDRFGNP 120
           PPPAV+SLGLP PCIE+PKTRPRP ++L FWRR KK  +G R A+A TIDYSN       
Sbjct: 61  PPPAVISLGLPLPCIEKPKTRPRPTMKLWFWRRVKKSRDGGRAAQATTIDYSN------- 120

Query: 121 DKLETFSFLSSDCEFMTSSRNSMLSSPSLSLSSSSSPSSFFESLTVR--------RRLSC 180
           DKLETFSFLSSDCEFM S R+SM SS     SSSSSPSS  ESLTVR        R  SC
Sbjct: 121 DKLETFSFLSSDCEFMASPRDSMSSS-----SSSSSPSSLIESLTVRNMGRVSLGRPSSC 180

Query: 181 N-AWQINRILACYH 184
           + A +I+RILACYH
Sbjct: 181 STAGKIHRILACYH 182

[Close]

BLAST of Carg24221 vs. ExPASy TrEMBL
Match: A0A6J1K9Q8 (uncharacterized protein LOC111492375 OS=Cucurbita maxima OX=3661 GN=LOC111492375 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 8.0e-60
Identity = 137/194 (70.62%), Postives = 150/194 (77.32%), Query Frame = 0


Query: 1   MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT 60
           MD  FHWD+K+KVI+RTSSIGCSSRS YYCG  EGVPFKWETQPGTPKDPPPQD+LPPL+
Sbjct: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60

Query: 61  PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKK--NGKRDARARTIDYSNEDRFGNP 120
           PPPAVLSLGLP PCIE+PKTRPRP ++LRFWRR KK  +  R A+A TIDYSN       
Sbjct: 61  PPPAVLSLGLPLPCIEKPKTRPRPTMKLRFWRRVKKSRDDGRAAQATTIDYSN------- 120

Query: 121 DKLETFSFLSSDCEFMTSSRNSMLSSPSLSLSSSSSPSSFFESLTVR--------RRLSC 180
            KLETFSFLSSDCEFM S R+SM  S S S SSSSSPSS  ESLTVR        R  SC
Sbjct: 121 GKLETFSFLSSDCEFMASPRDSM--SSSSSSSSSSSPSSLIESLTVRHMGRVSLGRPSSC 180

Query: 181 -NAWQINRILACYH 184
             A +I+RILACYH
Sbjct: 181 GTAGKIHRILACYH 185

[Close]

BLAST of Carg24221 vs. ExPASy TrEMBL
Match: A0A6J1DGF8 (uncharacterized protein LOC111020830 OS=Momordica charantia OX=3673 GN=LOC111020830 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.1e-56
Identity = 131/188 (69.68%), Postives = 145/188 (77.13%), Query Frame = 0


Query: 1   MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT 60
           MD  FHWD K+KVISRTSS+GCSSRSIYYCGT EGVPFKWETQPGTPKDPPPQ+MLPPL+
Sbjct: 1   MDGKFHWDTKSKVISRTSSVGCSSRSIYYCGTAEGVPFKWETQPGTPKDPPPQEMLPPLS 60

Query: 61  PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDK 120
           PPPAVLSLGLPKPCIE+P  RPR  + LRFWR+S+K  KR+         N D FG+PDK
Sbjct: 61  PPPAVLSLGLPKPCIERPNPRPRLRMSLRFWRKSEK--KRE---------NGDGFGHPDK 120

Query: 121 LETFSFLSSDCEFMTSSRNSMLSSPSLSLSSSSS-PSSFFESLTVRR--RLSC-NAWQIN 180
           LET SF+SSD EFM S R+S+    SLS SSSSS PSS  ESL VR   R+S    WQIN
Sbjct: 121 LETSSFMSSDGEFMASPRDSV---SSLSSSSSSSLPSSLLESLNVRNMGRVSFGRPWQIN 174

Query: 181 RILACYHC 185
           R LACYHC
Sbjct: 181 RFLACYHC 174

[Close]

BLAST of Carg24221 vs. ExPASy TrEMBL
Match: A0A5D3BQA0 (Putative OSBP(Oxysterol binding protein)-related protein 4B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00410 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 4.0e-51
Identity = 122/192 (63.54%), Postives = 139/192 (72.40%), Query Frame = 0


Query: 5   FHWDVKNKVISRTSSIGCSSRSIYYCGTP-EGVPFKWETQPGTPKDPPPQDMLPPLTPPP 64
           FHWD+KNKVISRTSSIGCSS SIYY GT  +GVPFKWETQPGTPKDPPPQD+LPPL+PPP
Sbjct: 6   FHWDMKNKVISRTSSIGCSSHSIYYSGTANQGVPFKWETQPGTPKDPPPQDLLPPLSPPP 65

Query: 65  AVLSLGLPKP-CIEQPKTRPRPLIRLRFWRR--SKKNGKRDARARTIDYSNEDRFGNPDK 124
           AVLSLG+PKP CI+QPK+R  P +RLRFW++    ++G R A+   ID+ N       DK
Sbjct: 66  AVLSLGVPKPACIDQPKSRSLPRMRLRFWKKIMKSRDGGRAAQTTPIDHYN-------DK 125

Query: 125 LETFSFLSSDCEFMTSSRNSMLSSPSLSLSSSSSPSSFFESLTV---------RRRLSCN 184
           LETFSFLSSDCEFM S       S S + SSSSSPSSF +SL V         R     N
Sbjct: 126 LETFSFLSSDCEFMASPSPRDSMSSSSTSSSSSSPSSFIDSLNVGNTQKVSFGRPSSWNN 185

[Close]

BLAST of Carg24221 vs. TAIR 10
Match: AT4G25845.1 (BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-13
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 14 ISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLTPPPAVLSLGLPKP 73
          ISR SS+G      Y    PEGVPF+WE QPGTP +  P++++PPL+PPPA+LSLGLPKP
Sbjct: 12 ISRNSSVG-----YYDERMPEGVPFEWEMQPGTPINTQPREVVPPLSPPPAMLSLGLPKP 71

Query: 74 --CIEQPKTRPRPL-IRLRFWR 93
             IE+PK    P  ++LR W+
Sbjct: 72 SISIEEPKNFVFPTKLKLRNWK 88

[Close]

BLAST of Carg24221 vs. TAIR 10
Match: AT4G25850.2 (OSBP(oxysterol binding protein)-related protein 4B )

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-13
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 14 ISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLTPPPAVLSLGLPKP 73
          ISR SS+G      Y    PEGVPF+WE QPGTP +  P++++PPL+PPPA+LSLGLPKP
Sbjct: 12 ISRNSSVG-----YYDERMPEGVPFEWEMQPGTPINTQPREVVPPLSPPPAMLSLGLPKP 71

Query: 74 --CIEQPKTRPRPL-IRLRFWR 93
             IE+PK    P  ++LR W+
Sbjct: 72 SISIEEPKNFVFPTKLKLRNWK 88

[Close]

BLAST of Carg24221 vs. TAIR 10
Match: AT5G01790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 5.6e-05
Identity = 34/89 (38.20%), Postives = 43/89 (48.31%), Query Frame = 0


Query: 15  SRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQ-DMLPPLTPPPAVLSLGLPKP 74
           S  S+   S R  YY G    VPF+WE+ PGTPK P  +   LPPLTPPP+  S    + 
Sbjct: 54  SSVSAACPSFRIYYYDGAAGAVPFEWESHPGTPKHPSSELPTLPPLTPPPSHFSFSGDQI 113

Query: 75  CIEQPKTRPRPLIRL---RFWRRSKKNGK 100
                K+  + L  +    FW     NGK
Sbjct: 114 RRRSKKSTKKILALIPTRLFWLSGDHNGK 142

[Close]

BLAST of Carg24221 vs. TAIR 10
Match: AT2G40475.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56260.2); Has 477 Blast hits to 219 proteins in 41 species: Archae - 0; Bacteria - 4; Metazoa - 91; Fungi - 61; Plants - 144; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 8.1e-04
Identity = 51/150 (34.00%), Postives = 68/150 (45.33%), Query Frame = 0


Query: 9   VKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQD--MLPPLTPPPAVL 68
           + +K+I + SS   SS  IYY G    VPF WET+PGTPK     +   LPPLTPPP+  
Sbjct: 13  ISSKIIVKESSQVNSSSRIYYYG-GASVPFLWETRPGTPKHALFSESLRLPPLTPPPS-- 72

Query: 69  SLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDKLETFSF 128
                                  ++  S  +G + ++ARTI    + RF         + 
Sbjct: 73  -----------------------YYSSSSSSGNKLSKARTI---KQTRF-------VKTL 126

Query: 129 LSSDCEFMTSSRNSMLSSPSLSLSSSSSPS 157
           LS      + S +S  SS S S SSSS PS
Sbjct: 133 LSRHVSRPSFSWSSASSSSSSSYSSSSPPS 126

The following BLAST results are available for this feature:

BLAST of Carg24221 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020906.1	1.4e-98	100.00	hypothetical protein SDJN02_17594, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7020905.1	5.8e-97	98.37	hypothetical protein SDJN02_17593, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022938321.1	5.5e-95	100.00	putative protein TPRXL [Cucurbita moschata]	[more]
KAG6586081.1	6.7e-85	98.20	Transcription initiation factor TFIID subunit 4b, partial [Cucurbita argyrosperm...	[more]
XP_022929606.1	9.7e-60	70.10	uncharacterized protein LOC111436141 [Cucurbita moschata]	[more]

BLAST of Carg24221 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24221 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCU1	2.6e-95	100.00	Uncharacterized protein OS=Cucurbita moschata OX=3662 GN=LOC111444457 PE=4 SV=1	[more]
A0A6J1ENL5	4.7e-60	70.10	uncharacterized protein LOC111436141 OS=Cucurbita moschata OX=3662 GN=LOC1114361...	[more]
A0A6J1K9Q8	8.0e-60	70.62	uncharacterized protein LOC111492375 OS=Cucurbita maxima OX=3661 GN=LOC111492375...	[more]
A0A6J1DGF8	1.1e-56	69.68	uncharacterized protein LOC111020830 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A5D3BQA0	4.0e-51	63.54	Putative OSBP(Oxysterol binding protein)-related protein 4B OS=Cucumis melo var....	[more]

BLAST of Carg24221 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25845.1	1.1e-13	53.66	BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-rela...	[more]
AT4G25850.2	1.1e-13	53.66	OSBP(oxysterol binding protein)-related protein 4B	[more]
AT5G01790.1	5.6e-05	38.20	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G40475.1	8.1e-04	34.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33257:SF6	OXYSTEROL-BINDING 4B-LIKE PROTEIN-RELATED	coord: 9..178
None	No IPR available	PANTHER	PTHR33257	OS05G0165500 PROTEIN	coord: 9..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24221-RA	Carg24221-RA	mRNA