Carg24174 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24174
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr06: 6240843 .. 6242683 (+)
RNA-Seq ExpressionCarg24174
SyntenyCarg24174
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAAGCATCTTCTTCTTGGGAGACGCACTCTTGTTCCCTTGGTGTTGAGTGGATAAAAGGGGTGGGAGAGGAGTTTAAGGTGGGAAAGGAGTTAAGGAGTTGATGCATCTAGTGCATTTTCAGCTTGTTGATGACACCTTTTTCAATTTGGGATTGGGAGGATCATTTGCTAATATTCTTAGAAGTTTGTTTTTTCCTTGAGATTAATAGGGCAAAAGCTCCATTGTAGGTTTGAACTTCTACCCCTCTAGGTTGAGTTCTTTGGCTTCTTTGGTTGGGTGTGAGGTGGTTCAATTCCCTTCCTCTTATCTAGAATTTCTTTTGGGTGCACGTACATATTTGGGTTGGCCCAATGATAAGTCCATTGGGGAGGCCTTACGAGCCGATCCAAATGTGGCATAAATGGGTCAGCCCATGAGTCAGATCGATCGGGCTGGTCAAACTTTGCTTTTGAACCCATCATGGATCAATGGGCTGAACTTGGGCCAACCTTTGGGCATGGCCTTGTTGATGAGGTTGAACCCAGGGAAAAGGGAATTCAAGATTTGAACCCTTGATCTTCTATGGGTTTCTCTCACAATTATCTTTCTCACATCTTGCCTGCCACTTTTTTACCCTAAGGTGTCTTTTCTTTCTCCACTCTCTAGAATAACTTTTCAAAGGTCAAAATTTTCGTGTGACAAGTTTTACATAGGAAGTCAATACCATGGATTGTGTTAAAAAACACTCTGTGTTGTACTTGCTTTGGTGCATTCTTTATAGGTAGCAAGAGGAGGACCTTGATCATATGTTATGAGGTAGCCAGTTTGCACAATTGCTTTGGATTCAGAGGGATGGGTTGATTTGGATGTTTGTCATGGAGTAAGGATGGTTACTCTATGGTTGAGAGCAGGAAATGTTTCATGGCATGCTAGCTTCTTTGTTATTTTGTGGGACATCTTAGCTTGAGAGGAATAGGATGAAGTTTATAGAGTTAGAGAGTTCGTCTGTGGAGGTTTGGGAGACCCGTGGTTACATGGCCTTTGTAAATAGGAGCTATGTTGTATTATGTTGGATTGAATTAGGTTTTGAACTCTTTGTTATTGTTTTTGTTTTCAGTAGTATGTCCTTGTATATTATTTCATCTCTCAACGGAAGCTTGGTTTCTTACCAAATAACTAAATAAAACTGGTATTTCTAACTTATAATATTTTTCTCTTATTTTTATTAAGTGTTGTTAATTGAATAGAGTTCTATGACAATGTTAAACTTTTTCCCGATGTGTTATGTTCAAAACATCCTCACTGAACTATCTCCTCACTCTTAATGTGTTCGTAAATGTTGTAATCTGTGCAACTTATGTGACTTCTTGCTAATTTTGCAGATGCTTCCTGCTACTGAATCTAAGCTTGGAGTACTACAACACTCTTTCCCTTTTACCCTTTTATGTGCAATAATAGTTCCCTACTGGACAAAGCACTTGAAGCTTGTAAATGTATTTGATGAGTTTGGGATTGAAATTTGCATCAAGACTGATGAAGTGTTTAAGTTTATAATCTAGTGGTTCTAGCAATTAATTTTGCTCATAGATAGTAATAAGATGTTTTGGTAATGATTTTGTTTATCATTGCTCCTTGAATGAAGACTTGCTGTAAGTAGTCTTGAATGCTTGATCTCCAGGAAACTTATTGGTAAGTGCTTATTAGTTGGAACATCATTTTTTAAATGCTGAAATATTTCGTTAGCTTTGGGAATAGAATGCTATTGATCATTCATAACCTACTTTTCTTATTAATTAGCACTAACGACTTCAAGTTTTACCCCTGTTAGGTTCAATGTAGGAAGAAAAATGTTGAGT

mRNA sequence

ATGGGTAGCAAGAGGAGGACCTTGATCATATGTTATGAGATGCTTCCTGCTACTGAATCTAAGCTTGGAGTACTACAACACTCTTTCCCTTTTACCCTTTTATGTGCAATAATAGTTCCCTACTGGACAAAGCACTTGAAGCTTGTAAATGTATTTGATGAGTTTGGGATTGAAATTTGCATCAAGACTGATGAAGTGTTTAAGTTTATAATCTAGTGGTTCTAGCAATTAATTTTGCTCATAGATAGTAATAAGATGTTTTGGTAATGATTTTGTTTATCATTGCTCCTTGAATGAAGACTTGCTGTAAGTAGTCTTGAATGCTTGATCTCCAGGAAACTTATTGGTAAGTGCTTATTAGTTGGAACATCATTTTTTAAATGCTGAAATATTTCGTTAGCTTTGGGAATAGAATGCTATTGATCATTCATAACCTACTTTTCTTATTAATTAGCACTAACGACTTCAAGTTTTACCCCTGTTAGGTTCAATGTAGGAAGAAAAATGTTGAGT

Coding sequence (CDS)

ATGGGTAGCAAGAGGAGGACCTTGATCATATGTTATGAGATGCTTCCTGCTACTGAATCTAAGCTTGGAGTACTACAACACTCTTTCCCTTTTACCCTTTTATGTGCAATAATAGTTCCCTACTGGACAAAGCACTTGAAGCTTGTAAATGTATTTGATGAGTTTGGGATTGAAATTTGCATCAAGACTGATGAAGTGTTTAAGTTTATAATCTAG

Protein sequence

MGSKRRTLIICYEMLPATESKLGVLQHSFPFTLLCAIIVPYWTKHLKLVNVFDEFGIEICIKTDEVFKFII
Homology
BLAST of Carg24174 vs. NCBI nr
Match: KAG7028501.1 (hypothetical protein SDJN02_09682, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.7 bits (374), Expect = 1.9e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1  MGSKRRTLIICYEMLPATESKLGVLQHSFPFTLLCAIIVPYWTKHLKLVNVFDEFGIEIC 60
          MGSKRRTLIICYEMLPATESKLGVLQHSFPFTLLCAIIVPYWTKHLKLVNVFDEFGIEIC
Sbjct: 1  MGSKRRTLIICYEMLPATESKLGVLQHSFPFTLLCAIIVPYWTKHLKLVNVFDEFGIEIC 60

Query: 61 IKTDEVFKFII 72
          IKTDEVFKFII
Sbjct: 61 IKTDEVFKFII 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7028501.11.9e-32100.00hypothetical protein SDJN02_09682, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24174-RACarg24174-RAmRNA