Carg24170 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24170
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLate cornified envelope protein 1E
LocationCarg_Chr06: 6289291 .. 6289831 (+)
RNA-Seq ExpressionCarg24170
SyntenyCarg24170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCACATCATCCTCTTCCTCTTCCTCCCGTATGTTGCTTGTGCGGCGATGTCGGCTTTCCGGCCAACCTCTTCCGCTGCACCCTCTGCTCTCACCGGTTCCAACACTCGTAAGAATCCCTTAATTTTAATTCTTTTATTGTTGTGCTAGAATGTTTGTTTAATCCATCCCACCGTAATTTAAAAATTATCTTAAATAAATTAAGCAAAGAGACAGAGAAAAGATTCTTGGTACAAGAATCAAATACTGTGAACTATAATTTATTACTAAATATCTATTGTTTCGATTAATGGTGATGTTGGGGTTTGGTTCAGTTATTGCAGTAACTATTACGGCGAAATGGCAGAGGCTATTGAAGCCTGTGATTGGTGCAGATGTGAACGGAGATGCGGCCGCCGTGGCTCTGCGGCAAGGAAGTCTGGCGTGGCATCCCAAAAGAGCTCCGGTCAGGATAAAAGAGAAAGAAATTCCGGTGGAATGCCGTCGCCTCGGGTTGCTCCACGGCGGTACAAGCTTCTCAAGGATGTTATGTGTTAA

mRNA sequence

ATGGCTTCACATCATCCTCTTCCTCTTCCTCCCGTATGTTGCTTGTGCGGCGATGTCGGCTTTCCGGCCAACCTCTTCCGCTGCACCCTCTGCTCTCACCGGTTCCAACACTCTTATTGCAGTAACTATTACGGCGAAATGGCAGAGGCTATTGAAGCCTGTGATTGGTGCAGATGTGAACGGAGATGCGGCCGCCGTGGCTCTGCGGCAAGGAAGTCTGGCGTGGCATCCCAAAAGAGCTCCGGTCAGGATAAAAGAGAAAGAAATTCCGGTGGAATGCCGTCGCCTCGGGTTGCTCCACGGCGGTACAAGCTTCTCAAGGATGTTATGTGTTAA

Coding sequence (CDS)

ATGGCTTCACATCATCCTCTTCCTCTTCCTCCCGTATGTTGCTTGTGCGGCGATGTCGGCTTTCCGGCCAACCTCTTCCGCTGCACCCTCTGCTCTCACCGGTTCCAACACTCTTATTGCAGTAACTATTACGGCGAAATGGCAGAGGCTATTGAAGCCTGTGATTGGTGCAGATGTGAACGGAGATGCGGCCGCCGTGGCTCTGCGGCAAGGAAGTCTGGCGTGGCATCCCAAAAGAGCTCCGGTCAGGATAAAAGAGAAAGAAATTCCGGTGGAATGCCGTCGCCTCGGGTTGCTCCACGGCGGTACAAGCTTCTCAAGGATGTTATGTGTTAA

Protein sequence

MASHHPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCERRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Homology
BLAST of Carg24170 vs. NCBI nr
Match: KAG7028505.1 (hypothetical protein SDJN02_09686, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 240.4 bits (612), Expect = 7.7e-60
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0

Query: 1   MASHHPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCE 60
           MASHHPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCE
Sbjct: 1   MASHHPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCE 60

Query: 61  RRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 112
           RRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  RRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 111

BLAST of Carg24170 vs. NCBI nr
Match: KAG6597027.1 (hypothetical protein SDJN03_10207, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 233.0 bits (593), Expect = 1.2e-57
Identity = 110/113 (97.35%), Postives = 110/113 (97.35%), Query Frame = 0

Query: 1   MASHH--PLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCR 60
           MASHH  PLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGE AEAIEACDWCR
Sbjct: 1   MASHHPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGETAEAIEACDWCR 60

Query: 61  CERRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 112
           CERRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  CERRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 113

BLAST of Carg24170 vs. NCBI nr
Match: XP_023540879.1 (uncharacterized protein LOC111801126 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.4 bits (581), Expect = 3.0e-56
Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 0

Query: 1   MASHHPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCE 60
           MASHH  PLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGE+AEAIE CDWCRCE
Sbjct: 1   MASHH--PLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGELAEAIEVCDWCRCE 60

Query: 61  RRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 112
           RRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  RRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 109

BLAST of Carg24170 vs. NCBI nr
Match: XP_022974251.1 (uncharacterized protein LOC111472884 isoform X2 [Cucurbita maxima])

HSP 1 Score: 227.6 bits (579), Expect = 5.1e-56
Identity = 108/117 (92.31%), Postives = 108/117 (92.31%), Query Frame = 0

Query: 1   MASHH------PLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEAC 60
           MASHH      PLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGE AEAIE C
Sbjct: 1   MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC 60

Query: 61  DWCRCERRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 112
           DWCRCERRCGRRGSAARK GVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  DWCRCERRCGRRGSAARKFGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 117

BLAST of Carg24170 vs. NCBI nr
Match: XP_022974249.1 (uncharacterized protein LOC111472884 isoform X1 [Cucurbita maxima])

HSP 1 Score: 223.0 bits (567), Expect = 1.3e-54
Identity = 108/118 (91.53%), Postives = 108/118 (91.53%), Query Frame = 0

Query: 1   MASHH------PLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEAC 60
           MASHH      PLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGE AEAIE C
Sbjct: 1   MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC 60

Query: 61  DWCRCERRCGRRGSAARKSGVASQ-KSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 112
           DWCRCERRCGRRGSAARK GVASQ KSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  DWCRCERRCGRRGSAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 118

BLAST of Carg24170 vs. ExPASy TrEMBL
Match: A0A6J1IAU2 (uncharacterized protein LOC111472884 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472884 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.5e-56
Identity = 108/117 (92.31%), Postives = 108/117 (92.31%), Query Frame = 0

Query: 1   MASHH------PLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEAC 60
           MASHH      PLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGE AEAIE C
Sbjct: 1   MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC 60

Query: 61  DWCRCERRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 112
           DWCRCERRCGRRGSAARK GVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  DWCRCERRCGRRGSAARKFGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 117

BLAST of Carg24170 vs. ExPASy TrEMBL
Match: A0A6J1IH20 (uncharacterized protein LOC111472884 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472884 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.1e-55
Identity = 108/118 (91.53%), Postives = 108/118 (91.53%), Query Frame = 0

Query: 1   MASHH------PLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEAC 60
           MASHH      PLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGE AEAIE C
Sbjct: 1   MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC 60

Query: 61  DWCRCERRCGRRGSAARKSGVASQ-KSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 112
           DWCRCERRCGRRGSAARK GVASQ KSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  DWCRCERRCGRRGSAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 118

BLAST of Carg24170 vs. ExPASy TrEMBL
Match: A0A0A0L5P1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.2e-27
Identity = 67/104 (64.42%), Postives = 77/104 (74.04%), Query Frame = 0

Query: 10  PPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY-GEMAEA-IEACDWCRCERRCGRRG 69
           PP+CCLCGDVGFPA LFRCT CS+RFQHSYCSNYY GE  +A I  CDWCR E+R  R  
Sbjct: 5   PPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRTCRPA 64

Query: 70  SAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 112
            A+      SQKS+   +R  ++ G+PSPR APRRYKLLKDVMC
Sbjct: 65  FAS----TTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

BLAST of Carg24170 vs. ExPASy TrEMBL
Match: A0A6A2YJP5 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111398pilonHSYRG00021 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.4e-27
Identity = 63/117 (53.85%), Postives = 76/117 (64.96%), Query Frame = 0

Query: 9   LPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCERRCGRRGS 68
           L  VCC+CGDVGFP  +FRC  C HRFQHSYCSNYY E AE +E CDWCR E R  R+GS
Sbjct: 4   LQTVCCMCGDVGFPDKIFRCNKCRHRFQHSYCSNYYSEFAEPVEVCDWCRSEERNSRQGS 63

Query: 69  AARKSGVASQ--------------KSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 112
            ++KS   ++              K  G D++ ++S G PSPR + RRYKLLKDVMC
Sbjct: 64  TSKKSSTGNEAGILNRSEYSDQKIKQDGGDRKGKSS-GTPSPRPSTRRYKLLKDVMC 119

BLAST of Carg24170 vs. ExPASy TrEMBL
Match: A0A5D3DB67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00440 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.2e-26
Identity = 66/104 (63.46%), Postives = 75/104 (72.12%), Query Frame = 0

Query: 10  PPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY-GEMAEA-IEACDWCRCERRCGRRG 69
           PP+CCLCGDVGFPANLFRCT CS+RFQHSYCSNYY GE  +A I  CDWCR E+R  R  
Sbjct: 5   PPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRTRRPA 64

Query: 70  SAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 112
           + A      SQK     +   ++ G+PSPR APRRYKLLKDVMC
Sbjct: 65  AFAT---TTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 105

BLAST of Carg24170 vs. TAIR 10
Match: AT1G02070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60520.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.0 bits (258), Expect = 8.0e-23
Identity = 58/130 (44.62%), Postives = 68/130 (52.31%), Query Frame = 0

Query: 12  VCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCERRCGRRGSAAR 71
           VCC+CGDVGF   LF C  C  RFQHSYCSNYYG+ AE  E CDWCR + R  +  + AR
Sbjct: 4   VCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYYGQFAEPTEICDWCRSDDR--KLSNVAR 63

Query: 72  KSGVASQKSSGQDKRER------------------------------NSGGMPSPRVAPR 112
             G +S+K S   K E                               + GG+ SP+ A R
Sbjct: 64  HGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQVAKGVAGDGGGVTSPKTATR 123

BLAST of Carg24170 vs. TAIR 10
Match: AT3G60520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 102.4 bits (254), Expect = 2.3e-22
Identity = 55/123 (44.72%), Postives = 71/123 (57.72%), Query Frame = 0

Query: 12  VCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCERRCGRRGSAAR 71
           VCC+CGDVGF   LF C+ C +RFQHSYCS+YY E A+ I+ CDWC+CE +  R G+   
Sbjct: 8   VCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYYKEQADPIKICDWCQCEAK-SRTGAKHG 67

Query: 72  KSGVASQK-----------------------SSGQDKRERNSGGMPSPRVAPRRYKLLKD 112
            +G +S++                       SS     ++   G+PSPR A RRYKLLKD
Sbjct: 68  VNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATRRYKLLKD 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7028505.17.7e-60100.00hypothetical protein SDJN02_09686, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6597027.11.2e-5797.35hypothetical protein SDJN03_10207, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023540879.13.0e-5696.40uncharacterized protein LOC111801126 [Cucurbita pepo subsp. pepo][more]
XP_022974251.15.1e-5692.31uncharacterized protein LOC111472884 isoform X2 [Cucurbita maxima][more]
XP_022974249.11.3e-5491.53uncharacterized protein LOC111472884 isoform X1 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1IAU22.5e-5692.31uncharacterized protein LOC111472884 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1IH206.1e-5591.53uncharacterized protein LOC111472884 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A0A0L5P13.2e-2764.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1[more]
A0A6A2YJP55.4e-2753.85Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111398pilon... [more]
A0A5D3DB671.2e-2663.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
AT1G02070.18.0e-2344.62unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G60520.12.3e-2244.72unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..101
NoneNo IPR availablePANTHERPTHR33779EXPRESSED PROTEINcoord: 11..87
coord: 78..111
NoneNo IPR availablePANTHERPTHR33779:SF16SUBFAMILY NOT NAMEDcoord: 11..87
coord: 78..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24170-RACarg24170-RAmRNA