Carg24170 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCACATCATCCTCTTCCTCTTCCTCCCGTATGTTGCTTGTGCGGCGATGTCGGCTTTCCGGCCAACCTCTTCCGCTGCACCCTCTGCTCTCACCGGTTCCAACACTCGTAAGAATCCCTTAATTTTAATTCTTTTATTGTTGTGCTAGAATGTTTGTTTAATCCATCCCACCGTAATTTAAAAATTATCTTAAATAAATTAAGCAAAGAGACAGAGAAAAGATTCTTGGTACAAGAATCAAATACTGTGAACTATAATTTATTACTAAATATCTATTGTTTCGATTAATGGTGATGTTGGGGTTTGGTTCAGTTATTGCAGTAACTATTACGGCGAAATGGCAGAGGCTATTGAAGCCTGTGATTGGTGCAGATGTGAACGGAGATGCGGCCGCCGTGGCTCTGCGGCAAGGAAGTCTGGCGTGGCATCCCAAAAGAGCTCCGGTCAGGATAAAAGAGAAAGAAATTCCGGTGGAATGCCGTCGCCTCGGGTTGCTCCACGGCGGTACAAGCTTCTCAAGGATGTTATGTGTTAA ATGGCTTCACATCATCCTCTTCCTCTTCCTCCCGTATGTTGCTTGTGCGGCGATGTCGGCTTTCCGGCCAACCTCTTCCGCTGCACCCTCTGCTCTCACCGGTTCCAACACTCTTATTGCAGTAACTATTACGGCGAAATGGCAGAGGCTATTGAAGCCTGTGATTGGTGCAGATGTGAACGGAGATGCGGCCGCCGTGGCTCTGCGGCAAGGAAGTCTGGCGTGGCATCCCAAAAGAGCTCCGGTCAGGATAAAAGAGAAAGAAATTCCGGTGGAATGCCGTCGCCTCGGGTTGCTCCACGGCGGTACAAGCTTCTCAAGGATGTTATGTGTTAA ATGGCTTCACATCATCCTCTTCCTCTTCCTCCCGTATGTTGCTTGTGCGGCGATGTCGGCTTTCCGGCCAACCTCTTCCGCTGCACCCTCTGCTCTCACCGGTTCCAACACTCTTATTGCAGTAACTATTACGGCGAAATGGCAGAGGCTATTGAAGCCTGTGATTGGTGCAGATGTGAACGGAGATGCGGCCGCCGTGGCTCTGCGGCAAGGAAGTCTGGCGTGGCATCCCAAAAGAGCTCCGGTCAGGATAAAAGAGAAAGAAATTCCGGTGGAATGCCGTCGCCTCGGGTTGCTCCACGGCGGTACAAGCTTCTCAAGGATGTTATGTGTTAA MASHHPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCERRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC Homology
BLAST of Carg24170 vs. NCBI nr
Match: KAG7028505.1 (hypothetical protein SDJN02_09686, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 240.4 bits (612), Expect = 7.7e-60 Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0
BLAST of Carg24170 vs. NCBI nr
Match: KAG6597027.1 (hypothetical protein SDJN03_10207, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 233.0 bits (593), Expect = 1.2e-57 Identity = 110/113 (97.35%), Postives = 110/113 (97.35%), Query Frame = 0
BLAST of Carg24170 vs. NCBI nr
Match: XP_023540879.1 (uncharacterized protein LOC111801126 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 228.4 bits (581), Expect = 3.0e-56 Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 0
BLAST of Carg24170 vs. NCBI nr
Match: XP_022974251.1 (uncharacterized protein LOC111472884 isoform X2 [Cucurbita maxima]) HSP 1 Score: 227.6 bits (579), Expect = 5.1e-56 Identity = 108/117 (92.31%), Postives = 108/117 (92.31%), Query Frame = 0
BLAST of Carg24170 vs. NCBI nr
Match: XP_022974249.1 (uncharacterized protein LOC111472884 isoform X1 [Cucurbita maxima]) HSP 1 Score: 223.0 bits (567), Expect = 1.3e-54 Identity = 108/118 (91.53%), Postives = 108/118 (91.53%), Query Frame = 0
BLAST of Carg24170 vs. ExPASy TrEMBL
Match: A0A6J1IAU2 (uncharacterized protein LOC111472884 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472884 PE=4 SV=1) HSP 1 Score: 227.6 bits (579), Expect = 2.5e-56 Identity = 108/117 (92.31%), Postives = 108/117 (92.31%), Query Frame = 0
BLAST of Carg24170 vs. ExPASy TrEMBL
Match: A0A6J1IH20 (uncharacterized protein LOC111472884 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472884 PE=4 SV=1) HSP 1 Score: 223.0 bits (567), Expect = 6.1e-55 Identity = 108/118 (91.53%), Postives = 108/118 (91.53%), Query Frame = 0
BLAST of Carg24170 vs. ExPASy TrEMBL
Match: A0A0A0L5P1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 3.2e-27 Identity = 67/104 (64.42%), Postives = 77/104 (74.04%), Query Frame = 0
BLAST of Carg24170 vs. ExPASy TrEMBL
Match: A0A6A2YJP5 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111398pilonHSYRG00021 PE=4 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 5.4e-27 Identity = 63/117 (53.85%), Postives = 76/117 (64.96%), Query Frame = 0
BLAST of Carg24170 vs. ExPASy TrEMBL
Match: A0A5D3DB67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00440 PE=4 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 1.2e-26 Identity = 66/104 (63.46%), Postives = 75/104 (72.12%), Query Frame = 0
BLAST of Carg24170 vs. TAIR 10
Match: AT1G02070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60520.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 104.0 bits (258), Expect = 8.0e-23 Identity = 58/130 (44.62%), Postives = 68/130 (52.31%), Query Frame = 0
BLAST of Carg24170 vs. TAIR 10
Match: AT3G60520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 102.4 bits (254), Expect = 2.3e-22 Identity = 55/123 (44.72%), Postives = 71/123 (57.72%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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