Carg23925 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg23925
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr05: 4065262 .. 4066951 (-)
RNA-Seq ExpressionCarg23925
SyntenyCarg23925
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTACTTCGACGTGAATGAATCGTTTTGTTTGTGTTCTTCCGTGATTTTCTTCTTCTCCATTCTGGGTTTTTTGACCGTTGCTTTTCTTCTAAAACCCCCCATTTCTCTCTCTACCTTCATGATCGTCTCTGTCAGTGGCAGTGTGTGATCAAGCATTCTTACACTATTCTCTGTTCCTTCCCGCCGGCCGTGATTCATTCATCCCACCAGGTACTTCAATGATTTTGTGTTTTTTTTCTCTAATTTTTCTTCTGGGTTTCCATGGTTTTCTGTGAATATATTAAGATCGATGAAATATTTGTTGCTGAACTATGAATTCTTAGGGATTTTGTGCCTTTTCTCATCATTTGTTCTTCTGGGTTGCTATTGTTTTCTGTTGAAATCGTAACATTGCTTCAGTATTTGTTCTTGAACTATGAATTCTAAGGGATTTTATGCTTTTTCTCATCATTTGTTCTTCTGGGTTGCTATTGTTTTCTGTTGAAATCGTAACATTGCTTCAGTATTTGTTCTTGAACTATGAATTCTAAGGGATTTTATGCTTTTTCTCATCATTTGTTCTTCTGGGTTGCTATTGTTTTCTGTTGAAATCGTAACATTGCTTCAGTATTTGTTGTTGAACTATGAATTCTTAGGGATCTTGTGCTTTTTCTCATCATTTGTTCTTCTGGATTGCTATTGTTTTCTGTTGAAATCGTAACATTGCTTCAGTATTTGTTGTTGAACTATGAATTCTTAGGGATTTTATGCTTTTTCTCATCATTTGTTCTTCTGGGTTGTCATAGTTTTCCGTGGGGATAACGATATTTCTTCTGTATTGCTTGATGAATTGTAATCTTTCAGGGATCATGTGATTTTATCTCAACATTTACTTCTAGGTTGCTATAACATTGCTGAAATATTTGTTGTTGAACTGTAAATTTTCAGGGATTAAGTGTTTTTTTCTGTTCCGGATTGCTATGTTTGCTATGTTCAGGGATTATGTGCTTTTTTCTCTACATTTCCTCTTCTGGGTTGCTATTGTTTTCTTGAGGAAATAAGAACATCGTTTCTATATTTCTTGTGAAACTCTAAATTTTTGTTCACTCTCTCGCTCTCTTCTCCTTCTCAATGAATGTCTCAGACCACTTTGTAGAGAGAGAGAGAGAGAAACAGAGAGGGGTTTATTTGTAATTTGATATTTGATCGGTTTCTCCATGTGAAGTCTGCAAATGGGTCCTTTACTTTGAGCCCTTTATCTTCTTTTCTTGTGTTTTGCTAAGCTCGAAATATGACAGTCATCATTCTTCATTCTGCCTGTTTTTGACTTTCTTTTCATTATTTTGTAATTTTATATTGCTATCCTTTTGTTTTTTGGTTCATAATATAATATATCTTATCAGTTTCCTTTTGAATTTCGAACTGGCAAGTTAAGGATTAGAGGTTCCTGTTGTTTCAGCTGAAATCTTTGACAACTCCTCAATAGAATCTTTTGTTCTTTTTTTGTGTTCTTTAACTTCTAAATCAAGAAAAGCATTAATCCTCTAAACCCTCCTCTCTGTATACTCAAATATGTTGTAGAATCCTTCATTTCTGTTGGTTTTGATTTGAAATAGGATCTTGATTCCCTGTTGTTCTTCCTGGTTCTTGTTCTGTGTGTGAATTTGGCATTGCTTTTGCCTGAACAGCCAAGAGAAACCTTATGA

mRNA sequence

ATGAGCTACTTCGACTGGCAGTGTGTGATCAAGCATTCTTACACTATTCTCTGTTCCTTCCCGCCGGCCGTGATTCATTCATCCCACCAGGATCTTGATTCCCTGTTGTTCTTCCTGGTTCTTGTTCTGTGTGTGAATTTGGCATTGCTTTTGCCTGAACAGCCAAGAGAAACCTTATGA

Coding sequence (CDS)

ATGAGCTACTTCGACTGGCAGTGTGTGATCAAGCATTCTTACACTATTCTCTGTTCCTTCCCGCCGGCCGTGATTCATTCATCCCACCAGGATCTTGATTCCCTGTTGTTCTTCCTGGTTCTTGTTCTGTGTGTGAATTTGGCATTGCTTTTGCCTGAACAGCCAAGAGAAACCTTATGA

Protein sequence

MSYFDWQCVIKHSYTILCSFPPAVIHSSHQDLDSLLFFLVLVLCVNLALLLPEQPRETL
Homology
[Close]
BLAST of Carg23925 vs. NCBI nr
Match: KAG7029835.1 (hypothetical protein SDJN02_08178, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.0 bits (310), Expect = 4.3e-25
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MSYFDWQCVIKHSYTILCSFPPAVIHSSHQDLDSLLFFLVLVLCVNLALLLPEQPRETL 60
          MSYFDWQCVIKHSYTILCSFPPAVIHSSHQDLDSLLFFLVLVLCVNLALLLPEQPRETL
Sbjct: 1  MSYFDWQCVIKHSYTILCSFPPAVIHSSHQDLDSLLFFLVLVLCVNLALLLPEQPRETL 59

[Close]
BLAST of Carg23925 vs. NCBI nr
Match: KAG6598884.1 (hypothetical protein SDJN03_08662, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.8 bits (260), Expect = 2.7e-19
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 0 

Query: 6   WQCVIKHSYTILCSFPPAVIHSSHQDLDSLLFFLVLVLCVNLALLLPEQPRE 58
           WQCVIKHSYTILCSFPPAVIHSSHQDLDSLLFFLVLVLCV+LALLLPEQP +
Sbjct: 65  WQCVIKHSYTILCSFPPAVIHSSHQDLDSLLFFLVLVLCVHLALLLPEQPEK 116

The following BLAST results are available for this feature:
BLAST of Carg23925 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029835.14.3e-25100.00hypothetical protein SDJN02_08178, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6598884.12.7e-1994.23hypothetical protein SDJN03_08662, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg23925 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg23925 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg23925 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23925-RACarg23925-RAmRNA