Carg23914 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg23914
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr05: 3921663 .. 3922579 (+)
RNA-Seq ExpressionCarg23914
SyntenyCarg23914
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGCTTAAGGAATTGCATGTCGCCGCACGGACGAGACGGTTGTTGGGTGATGGCTTCGACGCGCGCCGAGGCAGCTTGGCACCGGGGGGTTCGTGTACCTAGATTGTTTGGGCTTAACATTTGTTGTATGCAGGCTGGTGGGCTTCGGCTTCGCTTGATGGGTTACGAACAGTAATTATAAAACAACTAGAAGCAGGTAAAAAGTGATAAAATTAGAGAGCAATGTACGTGGATGAAAGTCTCCCTCGCTAATTTAGGAAATGATCATGGGTTTATAATAAAAAAATACTCTCTGTATTAACACGAGACCTTTTGGAGAAGTCTAAAAAGCTATGAGAACTTATACTCAAAGTGGACAATATCATGCTATTGTGGAGAGTCGTGTTCGTCTACCATAGTATCAGAGTCATGCCCTAAACTTAGCATGTCAATAAAATCTTCAAATGTCGAACAAATAACTCCAAAAGAAAAGGAGTCGAGGCTCTTCGAAGGCATTATAAAAAATGACTAAAACTCCAAAAGGAAAAGAGTTGAGCCTCAATTAAGGGGAGACGTACTTTGTTCGAGGGGAGGTGTTGGATGAAAGTACCACTATAAACAACCTTTTGAGGAAGTCTAAAGCAAAGCAACTAGAACTTTTATATATATATATATATATATATATATATATATATTTTTTTTTGAGTTAAAATATATAATTTTCAGACATAAAAAGTTGTTTGAAAATAAAATTAATTTTACTGTTAGGCCATCTCTTTAACTTTCTCTCTCCCTCCATTGTTATTGCCTCGAATCGTTGCTGTCCCCTCCGTCTCCACAGTGATTGCCTTGATCGCCGGCGCTGCCGACTGCCTCCACCGCGATTGTTTCATTCCATCCTCTGAAAGTTTCTCTCTCCTCTCAAATGCCTGA

mRNA sequence

ATGGCTGGCTTAAGGAATTGCATGTCGCCGCACGGACGAGACGGTTGTTGGGTGATGGCTTCGACGCGCGCCGAGGCAGCTTGGCACCGGGGGGCCATCTCTTTAACTTTCTCTCTCCCTCCATTGTTATTGCCTCGAATCGTTGCTGTCCCCTCCGTCTCCACAGTGATTGCCTTGATCGCCGGCGCTGCCGACTGCCTCCACCGCGATTGTTTCATTCCATCCTCTGAAAGTTTCTCTCTCCTCTCAAATGCCTGA

Coding sequence (CDS)

ATGGCTGGCTTAAGGAATTGCATGTCGCCGCACGGACGAGACGGTTGTTGGGTGATGGCTTCGACGCGCGCCGAGGCAGCTTGGCACCGGGGGGCCATCTCTTTAACTTTCTCTCTCCCTCCATTGTTATTGCCTCGAATCGTTGCTGTCCCCTCCGTCTCCACAGTGATTGCCTTGATCGCCGGCGCTGCCGACTGCCTCCACCGCGATTGTTTCATTCCATCCTCTGAAAGTTTCTCTCTCCTCTCAAATGCCTGA

Protein sequence

MAGLRNCMSPHGRDGCWVMASTRAEAAWHRGAISLTFSLPPLLLPRIVAVPSVSTVIALIAGAADCLHRDCFIPSSESFSLLSNA
Homology
[Close]
BLAST of Carg23914 vs. NCBI nr
Match: KAG7029824.1 (hypothetical protein SDJN02_08167, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 173.3 bits (438), Expect = 8.8e-40
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 1  MAGLRNCMSPHGRDGCWVMASTRAEAAWHRGAISLTFSLPPLLLPRIVAVPSVSTVIALI 60
          MAGLRNCMSPHGRDGCWVMASTRAEAAWHRGAISLTFSLPPLLLPRIVAVPSVSTVIALI
Sbjct: 1  MAGLRNCMSPHGRDGCWVMASTRAEAAWHRGAISLTFSLPPLLLPRIVAVPSVSTVIALI 60

Query: 61 AGAADCLHRDCFIPSSESFSLLSNA 86
          AGAADCLHRDCFIPSSESFSLLSNA
Sbjct: 61 AGAADCLHRDCFIPSSESFSLLSNA 85

[Close]
BLAST of Carg23914 vs. NCBI nr
Match: KAG6586007.1 (Vacuolar protein sorting-associated protein 41-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-09
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 1  MAGLRNCMSPHGRDGCWVMASTRAEAAWHRG 32
          MAGLRNCMSPHGRDGCWVMASTR EAAWHRG
Sbjct: 3  MAGLRNCMSPHGRDGCWVMASTRTEAAWHRG 33

The following BLAST results are available for this feature:
BLAST of Carg23914 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029824.18.8e-40100.00hypothetical protein SDJN02_08167, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6586007.11.6e-0996.77Vacuolar protein sorting-associated protein 41-like protein, partial [Cucurbita ... [more]
BLAST of Carg23914 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg23914 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg23914 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23914-RACarg23914-RAmRNA