Carg23768 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg23768
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 1308792 .. 1309865 (+)
RNA-Seq ExpressionCarg23768
SyntenyCarg23768
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACTTCAGAATATTCGAAACCCAAATGCTGGTGTCGAATCAGGAATCAGTGCGCTTCTGAAAGAATCGAGGGCTCATTTTACCAGCGAAGAGAAGGGACGTGATTCAGGTTGGGTTTGGCTTACTTTCGACATCGTAGGGTTTATCATTTCTTAATCCTCGGCTTTTCAACTTATCTCTCCCAATTTTCCCGGAAAATTTACTCAGTTTTCCGAGAAAGTGATATGGTGGAACTTTCTGTCTTTACTTTTTTGTTTGAATGATTACTTGGATTCATATATTTTAGGGTTTTTGCTATTTTTTTTTATGTTCTGCCAATTAGAAAAGAAGGTGAGCAATAGTTGCCTGAAATGGCGGGTTCGTTAAAGGTTAAAATCAAGAATCCAGGCAATAAGTTAGAAAACCAAAACTGAAAAGTGCCAAATTTAATTTAATAAACTGATAAGAACCCTTAGAAAACGAGGGCTTTTTTTATTTTGTTTATTAAATTGTTCCCAAACCAAGGGATTCTGTTGTTGGAGAGTGATCCATCTGTTTCTTTGCCTCAAAGAAACAGAAAAAGGAAAAAAAAAAATTAATAAAAAAAAAAAAGAAAAAAATTTAAAAAATTCAAAAAAGAAGGAAAAGAAAAGGAAGAAATCCCGAGGAGGAGGAGGGCCAATTAAACTTCAGCAATTTCCCTCTTTCCAGATCTGCTCGTTTCAACGTTCTGACAGGTTTTTTTTCTTCTGTCAGAACACCCAAATTCTTTTTACTTGATTCCCTTTGTTCATTTTCATCTTATAATGCGTTTCTCAGTCTATAATTTGGACAGTTTTGCAGAAAAGTGTCTGCAAACTCTCTCGGCTATCTCAAGGTTTGTAGTGCAACTTCTTTTACTTGATTTTGGGTTTCTTTGTATTCTTTAGTGTTCCTAGGTTCAATTTTTGTTCTTTTGGCTGATTTATACTTAGAAACTGTTCTATATGTTCATATGTATCAATTTTGAACTTTCATTCAATGTGATTCTTGAATTTGCAGTTTCTACGTATAGACATCAAGAAACTCAATGTTATATTGTTGAAATACTGA

mRNA sequence

ATGTTACTTCAGAATATTCGAAACCCAAATGCTGGTGTCGAATCAGGAATCAGTGCGCTTCTGAAAGAATCGAGGGCTCATTTTACCAGCGAAGAGAAGGGACGTGATTCAGAAAAGAAGGTGAGCAATAGTTGCCTGAAATGGCGGGAAAAGAAAAGGAAGAAATCCCGAGGAGGAGGAGGGCCAATTAAACTTCAGCAATTTCCCTCTTTCCAGATCTGCTCGTTTCAACGTTCTGACAGAAAAGTGTCTGCAAACTCTCTCGGCTATCTCAAGTTTCTACGTATAGACATCAAGAAACTCAATGTTATATTGTTGAAATACTGA

Coding sequence (CDS)

ATGTTACTTCAGAATATTCGAAACCCAAATGCTGGTGTCGAATCAGGAATCAGTGCGCTTCTGAAAGAATCGAGGGCTCATTTTACCAGCGAAGAGAAGGGACGTGATTCAGAAAAGAAGGTGAGCAATAGTTGCCTGAAATGGCGGGAAAAGAAAAGGAAGAAATCCCGAGGAGGAGGAGGGCCAATTAAACTTCAGCAATTTCCCTCTTTCCAGATCTGCTCGTTTCAACGTTCTGACAGAAAAGTGTCTGCAAACTCTCTCGGCTATCTCAAGTTTCTACGTATAGACATCAAGAAACTCAATGTTATATTGTTGAAATACTGA

Protein sequence

MLLQNIRNPNAGVESGISALLKESRAHFTSEEKGRDSEKKVSNSCLKWREKKRKKSRGGGGPIKLQQFPSFQICSFQRSDRKVSANSLGYLKFLRIDIKKLNVILLKY
Homology
[Close]
BLAST of Carg23768 vs. NCBI nr
Match: KAG7030759.1 (hypothetical protein SDJN02_04796, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.1 bits (531), Expect = 1.8e-50
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MLLQNIRNPNAGVESGISALLKESRAHFTSEEKGRDSEKKVSNSCLKWREKKRKKSRGGG 60
           MLLQNIRNPNAGVESGISALLKESRAHFTSEEKGRDSEKKVSNSCLKWREKKRKKSRGGG
Sbjct: 1   MLLQNIRNPNAGVESGISALLKESRAHFTSEEKGRDSEKKVSNSCLKWREKKRKKSRGGG 60

Query: 61  GPIKLQQFPSFQICSFQRSDRKVSANSLGYLKFLRIDIKKLNVILLKY 109
           GPIKLQQFPSFQICSFQRSDRKVSANSLGYLKFLRIDIKKLNVILLKY
Sbjct: 61  GPIKLQQFPSFQICSFQRSDRKVSANSLGYLKFLRIDIKKLNVILLKY 108

The following BLAST results are available for this feature:
BLAST of Carg23768 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7030759.11.8e-50100.00hypothetical protein SDJN02_04796, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg23768 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg23768 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg23768 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..45

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23768-RACarg23768-RAmRNA