Carg23392 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23392
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Imidazole glycerol phosphate synthase hisHF, chloroplastic
Location	Carg_Chr06: 3276669 .. 3277361 (-)
RNA-Seq Expression	Carg23392
Synteny	Carg23392

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTCTATGGCGATGAAGACGACGTATGGAAATGTCCGAAACACCCTTCCAAACGGCGGAGGACCGGAATATGTCCTCTCTGCCTCCGTGACCGCCTCCTCACTCTCTGCCCTGACTGCGCCAACGTACGTCCTTGCAACTGTTGTGTAACTACCACCACCACCACTACCTCTTCTTCTTCTTCTTCTTCCTCCTCTTTCTCTCGCTTCTCCTCCGCCGATGTTGCCTCTCTTGGATCCGTTGGCCGTCTCTCGAATCTGATTGACGGCGAGCCGGCCTTCCGCCGCTCTCGCTCTCTCGCTGCGATTCCGTTTCTCCGATCGAGATCGCGACTCGTTTCAGATTCGGAAGACTGTTCGTCGTCTGGTAATAGTGCTAGAGCGTCGTCGTTTTGGTCGATTTTCAGGTCGAGGAGTAAGAGGAGCGGCCATGACAGCGGAAGAACCGAGACAGCAGCGGAAATCGAATTCAGGCGGAGAGAGAAGGAGGTAGCGGAAGTTGAAGAGGCGATGAGACGAACGTTGATGATCCGGTCAAGATCAGTTGTGGTTTCCGATTCTAGCGGGAGATTCGTCCGGCCACCAGTGAAGGCTAAGACGTGGTACTTTCCGAGTCCGATCAAAGCTTTTCGGCAATCGAAGATTTCAAAGGCCGTTCTCACGGAACGGTCTCCGTTACACAGAGGTTAA

mRNA sequence

ATGGCGTTCTATGGCGATGAAGACGACGTATGGAAATGTCCGAAACACCCTTCCAAACGGCGGAGGACCGGAATATGTCCTCTCTGCCTCCGTGACCGCCTCCTCACTCTCTGCCCTGACTGCGCCAACGTACGTCCTTGCAACTGTTGTGTAACTACCACCACCACCACTACCTCTTCTTCTTCTTCTTCTTCCTCCTCTTTCTCTCGCTTCTCCTCCGCCGATGTTGCCTCTCTTGGATCCGTTGGCCGTCTCTCGAATCTGATTGACGGCGAGCCGGCCTTCCGCCGCTCTCGCTCTCTCGCTGCGATTCCGTTTCTCCGATCGAGATCGCGACTCGTTTCAGATTCGGAAGACTGTTCGTCGTCTGGTAATAGTGCTAGAGCGTCGTCGTTTTGGTCGATTTTCAGGTCGAGGAGTAAGAGGAGCGGCCATGACAGCGGAAGAACCGAGACAGCAGCGGAAATCGAATTCAGGCGGAGAGAGAAGGAGGTAGCGGAAGTTGAAGAGGCGATGAGACGAACGTTGATGATCCGGTCAAGATCAGTTGTGGTTTCCGATTCTAGCGGGAGATTCGTCCGGCCACCAGTGAAGGCTAAGACGTGGTACTTTCCGAGTCCGATCAAAGCTTTTCGGCAATCGAAGATTTCAAAGGCCGTTCTCACGGAACGGTCTCCGTTACACAGAGGTTAA

Coding sequence (CDS)

ATGGCGTTCTATGGCGATGAAGACGACGTATGGAAATGTCCGAAACACCCTTCCAAACGGCGGAGGACCGGAATATGTCCTCTCTGCCTCCGTGACCGCCTCCTCACTCTCTGCCCTGACTGCGCCAACGTACGTCCTTGCAACTGTTGTGTAACTACCACCACCACCACTACCTCTTCTTCTTCTTCTTCTTCCTCCTCTTTCTCTCGCTTCTCCTCCGCCGATGTTGCCTCTCTTGGATCCGTTGGCCGTCTCTCGAATCTGATTGACGGCGAGCCGGCCTTCCGCCGCTCTCGCTCTCTCGCTGCGATTCCGTTTCTCCGATCGAGATCGCGACTCGTTTCAGATTCGGAAGACTGTTCGTCGTCTGGTAATAGTGCTAGAGCGTCGTCGTTTTGGTCGATTTTCAGGTCGAGGAGTAAGAGGAGCGGCCATGACAGCGGAAGAACCGAGACAGCAGCGGAAATCGAATTCAGGCGGAGAGAGAAGGAGGTAGCGGAAGTTGAAGAGGCGATGAGACGAACGTTGATGATCCGGTCAAGATCAGTTGTGGTTTCCGATTCTAGCGGGAGATTCGTCCGGCCACCAGTGAAGGCTAAGACGTGGTACTTTCCGAGTCCGATCAAAGCTTTTCGGCAATCGAAGATTTCAAAGGCCGTTCTCACGGAACGGTCTCCGTTACACAGAGGTTAA

Protein sequence

MAFYGDEDDVWKCPKHPSKRRRTGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG

Homology

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BLAST of Carg23392 vs. NCBI nr
Match: KAG7028262.1 (hypothetical protein SDJN02_09443, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 438.3 bits (1126), Expect = 4.0e-119
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0


Query: 1   MAFYGDEDDVWKCPKHPSKRRRTGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS 60
           MAFYGDEDDVWKCPKHPSKRRRTGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS
Sbjct: 1   MAFYGDEDDVWKCPKHPSKRRRTGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS 60

Query: 61  SSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSEDC 120
           SSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSEDC
Sbjct: 61  SSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSEDC 120

Query: 121 SSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRS 180
           SSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRS
Sbjct: 121 SSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRS 180

Query: 181 RSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG 231
           RSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG
Sbjct: 181 RSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG 230

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BLAST of Carg23392 vs. NCBI nr
Match: KAG6596728.1 (hypothetical protein SDJN03_09908, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 436.0 bits (1120), Expect = 2.0e-118
Identity = 229/230 (99.57%), Postives = 229/230 (99.57%), Query Frame = 0


Query: 1   MAFYGDEDDVWKCPKHPSKRRRTGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS 60
           MAFYGDEDDVWKCPKHPSKRRR GICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS
Sbjct: 1   MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS 60

Query: 61  SSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSEDC 120
           SSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSEDC
Sbjct: 61  SSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSEDC 120

Query: 121 SSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRS 180
           SSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRS
Sbjct: 121 SSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRS 180

Query: 181 RSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG 231
           RSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG
Sbjct: 181 RSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG 230

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BLAST of Carg23392 vs. NCBI nr
Match: XP_022924447.1 (suppressor protein SRP40-like [Cucurbita moschata])

HSP 1 Score: 430.6 bits (1106), Expect = 8.3e-117
Identity = 227/230 (98.70%), Postives = 227/230 (98.70%), Query Frame = 0


Query: 1   MAFYGDEDDVWKCPKHPSKRRRTGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS 60
           MAFYGDEDDVWKC KHPSKRRR GICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS
Sbjct: 1   MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS 60

Query: 61  SSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSEDC 120
           SSSSSSSFSRFSSADV SLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSEDC
Sbjct: 61  SSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSEDC 120

Query: 121 SSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRS 180
           SSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRS
Sbjct: 121 SSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRS 180

Query: 181 RSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG 231
           RSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG
Sbjct: 181 RSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG 230

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BLAST of Carg23392 vs. NCBI nr
Match: XP_023540514.1 (suppressor protein SRP40-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 430.3 bits (1105), Expect = 1.1e-116
Identity = 228/231 (98.70%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 1   MAFYGDEDDVWKCPKHPSKRRRTGICPLCLRDRLLTLCPDCANVRPCNCCV-TTTTTTTS 60
           MAFYGDEDDVWKCPKHPSKRRR GICPLCLRDRLLTLCPDCANVRPCNCCV TTTTTTTS
Sbjct: 1   MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTTS 60

Query: 61  SSSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSED 120
           SSSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDS+D
Sbjct: 61  SSSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSDD 120

Query: 121 CSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIR 180
           CSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIR
Sbjct: 121 CSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIR 180

Query: 181 SRSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG 231
           SRSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG
Sbjct: 181 SRSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG 231

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BLAST of Carg23392 vs. NCBI nr
Match: XP_023005527.1 (vitellogenin-1-like [Cucurbita maxima])

HSP 1 Score: 424.1 bits (1089), Expect = 7.8e-115
Identity = 223/230 (96.96%), Postives = 226/230 (98.26%), Query Frame = 0


Query: 1   MAFYGDEDDVWKCPKHPSKRRRTGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS 60
           MAFYGDED+VWKCPKHPSKRRR GICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS
Sbjct: 1   MAFYGDEDNVWKCPKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS 60

Query: 61  SSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSEDC 120
           SSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDS DC
Sbjct: 61  SSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSVDC 120

Query: 121 SSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRS 180
           SSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEF RR KEVAEVEEAMRRTLMIRS
Sbjct: 121 SSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFTRRAKEVAEVEEAMRRTLMIRS 180

Query: 181 RSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG 231
           RSVVVSDSSGRFV+PPVKA+TWYFPSPIKAFRQSKISKAVLTERSPLHRG
Sbjct: 181 RSVVVSDSSGRFVQPPVKARTWYFPSPIKAFRQSKISKAVLTERSPLHRG 230

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BLAST of Carg23392 vs. ExPASy TrEMBL
Match: A0A6J1E8Z1 (suppressor protein SRP40-like OS=Cucurbita moschata OX=3662 GN=LOC111431922 PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 4.0e-117
Identity = 227/230 (98.70%), Postives = 227/230 (98.70%), Query Frame = 0


Query: 1   MAFYGDEDDVWKCPKHPSKRRRTGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS 60
           MAFYGDEDDVWKC KHPSKRRR GICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS
Sbjct: 1   MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS 60

Query: 61  SSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSEDC 120
           SSSSSSSFSRFSSADV SLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSEDC
Sbjct: 61  SSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSEDC 120

Query: 121 SSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRS 180
           SSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRS
Sbjct: 121 SSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRS 180

Query: 181 RSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG 231
           RSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG
Sbjct: 181 RSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG 230

[Close]

BLAST of Carg23392 vs. ExPASy TrEMBL
Match: A0A6J1KTD6 (vitellogenin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498490 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 3.8e-115
Identity = 223/230 (96.96%), Postives = 226/230 (98.26%), Query Frame = 0


Query: 1   MAFYGDEDDVWKCPKHPSKRRRTGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS 60
           MAFYGDED+VWKCPKHPSKRRR GICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS
Sbjct: 1   MAFYGDEDNVWKCPKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS 60

Query: 61  SSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSEDC 120
           SSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDS DC
Sbjct: 61  SSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSVDC 120

Query: 121 SSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRS 180
           SSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEF RR KEVAEVEEAMRRTLMIRS
Sbjct: 121 SSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFTRRAKEVAEVEEAMRRTLMIRS 180

Query: 181 RSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG 231
           RSVVVSDSSGRFV+PPVKA+TWYFPSPIKAFRQSKISKAVLTERSPLHRG
Sbjct: 181 RSVVVSDSSGRFVQPPVKARTWYFPSPIKAFRQSKISKAVLTERSPLHRG 230

[Close]

BLAST of Carg23392 vs. ExPASy TrEMBL
Match: A0A6J1HN71 (uncharacterized protein LOC111465171 OS=Cucurbita maxima OX=3661 GN=LOC111465171 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 6.2e-102
Identity = 203/231 (87.88%), Postives = 214/231 (92.64%), Query Frame = 0


Query: 1   MAFYGDEDDVWKCPKHPSKRRRTGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS 60
           MAFYGDEDDVWKCPKHPSKRRR GICPLCLRDRL++LCPDCANVRPCNCC   TTTTTSS
Sbjct: 1   MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLISLCPDCANVRPCNCC--ATTTTTSS 60

Query: 61  SSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDS-ED 120
           SSSSSSSFSRFSSAD+ASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSR V+DS +D
Sbjct: 61  SSSSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDD 120

Query: 121 CSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIR 180
           CSSSGNSARASSFWSIFRS++K+S  D GR E A E +F+RR KEVAEVEEAMRRTLMIR
Sbjct: 121 CSSSGNSARASSFWSIFRSKTKKS-RDGGRIEAAVEFDFKRRAKEVAEVEEAMRRTLMIR 180

Query: 181 SRSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG 231
           SRSV VSDSSGRFVR PVKAK WYFPSPIKAFRQSK+SKAVLTERSPLHRG
Sbjct: 181 SRSVAVSDSSGRFVRTPVKAKAWYFPSPIKAFRQSKVSKAVLTERSPLHRG 228

[Close]

BLAST of Carg23392 vs. ExPASy TrEMBL
Match: A0A6J1E664 (uncharacterized protein LOC111430968 OS=Cucurbita moschata OX=3662 GN=LOC111430968 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 1.1e-101
Identity = 203/231 (87.88%), Postives = 213/231 (92.21%), Query Frame = 0


Query: 1   MAFYGDEDDVWKCPKHPSKRRRTGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS 60
           MAFYGDEDDVWKCPKHPSKRRR GICPLCLRDRL+TLCPDCANVRPCNCC   TTTTTSS
Sbjct: 1   MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCANVRPCNCC--ATTTTTSS 60

Query: 61  SSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDS-ED 120
           SSSSSSSFSRFSSAD+ASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSR V+DS +D
Sbjct: 61  SSSSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDD 120

Query: 121 CSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIR 180
           CSSSGNSARASSFWSIFRS++K+S  D GR E A E +F+RR KEVAEVEEAMRRTLMIR
Sbjct: 121 CSSSGNSARASSFWSIFRSKTKKS-RDGGRIEAAVEFDFKRRAKEVAEVEEAMRRTLMIR 180

Query: 181 SRSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG 231
           SRSV VSDSSGRFVR PVKAK WYFPSPIKAFRQSK+ KAVLTERSPLHRG
Sbjct: 181 SRSVAVSDSSGRFVRTPVKAKAWYFPSPIKAFRQSKVPKAVLTERSPLHRG 228

[Close]

BLAST of Carg23392 vs. ExPASy TrEMBL
Match: A0A0A0L6G5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009520 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 6.0e-97
Identity = 196/231 (84.85%), Postives = 207/231 (89.61%), Query Frame = 0


Query: 1   MAFYGDEDDVWKCPKHPSKRRRTGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS 60
           MAFYGDEDD+WKCPKHPSKRRR GICPLCLRDRL+TLCPDCANVRPCNCC TT TTTTSS
Sbjct: 1   MAFYGDEDDLWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCANVRPCNCCATTNTTTTSS 60

Query: 61  SSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDS-ED 120
           SSSSSSSFSRFSSAD   LGSVGRLSNLIDGEPAFRRSRSLAAIPFL  RSR V+DS +D
Sbjct: 61  SSSSSSSFSRFSSAD---LGSVGRLSNLIDGEPAFRRSRSLAAIPFL--RSRFVADSGDD 120

Query: 121 CSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIR 180
           CSSSGNSAR SSFWSIF+S+SK+  +D GR E A EI+FRRR KEVAEVEEAMRR LMIR
Sbjct: 121 CSSSGNSARTSSFWSIFKSKSKKR-NDGGRMEAAVEIDFRRRAKEVAEVEEAMRRKLMIR 180

Query: 181 SRSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG 231
           SRSV V+DS GR VRPPVKAKTWYFPSPIKAFRQSK+ K VLTERSPLHRG
Sbjct: 181 SRSVAVADSGGRIVRPPVKAKTWYFPSPIKAFRQSKLPKPVLTERSPLHRG 225

[Close]

BLAST of Carg23392 vs. TAIR 10
Match: AT1G32690.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35200.1); Has 45 Blast hits to 45 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 129.8 bits (325), Expect = 2.8e-30
Identity = 100/235 (42.55%), Postives = 131/235 (55.74%), Query Frame = 0


Query: 6   DEDDVWKCPKHPSKR---RRTGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSS 65
           DED   +C KH SKR      G+CP CL +RL +LCPDCA+  PC+C      + + SSS
Sbjct: 2   DEDGFSQCSKHFSKRGYFSGGGVCPFCLHERLSSLCPDCAHDLPCSCSSRAAVSFSPSSS 61

Query: 66  SSSSSFSRFS---SADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSED 125
           SSSSSFS F+   S +++ +GSVGR+++LI+ EPAFRRS+S+ AIP    +   V DS  
Sbjct: 62  SSSSSFSIFAGDISFNISGVGSVGRVASLIECEPAFRRSKSM-AIPI---KPDSVIDSG- 121

Query: 126 CSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIR 185
               G S + SSFW IF         + G T+ A                      +M +
Sbjct: 122 -LDHGRSKKTSSFWRIFMG-------NRGDTKPA----------------------IMKK 181

Query: 186 SRSVVVSDSSGRFVRPPV----KAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG 231
           SRSV V+   G F   PV    K K W FPSPIK FRQS++SK +  +RSPL+RG
Sbjct: 182 SRSVAVAGEFG-FSPVPVPATGKGKGWNFPSPIKVFRQSRVSKMIFQQRSPLYRG 200

[Close]

BLAST of Carg23392 vs. TAIR 10
Match: AT2G35200.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32690.1); Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-21
Identity = 79/223 (35.43%), Postives = 111/223 (49.78%), Query Frame = 0


Query: 10  VW-KCPKHPSK-RRRTGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSS 69
           VW KC +H  +     G+CP CL +RL +LCPDCA+  PC+C   T   + SS      S
Sbjct: 19  VWQKCSRHEGRFVCVAGVCPYCLHERLSSLCPDCAHDLPCSC---TPRASVSSRGEGDVS 78

Query: 70  FSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSEDCSSSGNSA 129
           F+R        +GSVGR++NLI+ EPAFRRS S+    F  ++   + ++E     G   
Sbjct: 79  FAR--------IGSVGRVANLIECEPAFRRSTSITGPYFWSAKPEPILETEKDLKPG--- 138

Query: 130 RASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSD 189
           R    W +FR      G+    T+  A    ++      EV         + S + V S 
Sbjct: 139 RGRWLWRLFR------GNREEETKIKAAKVMKKSNSVAGEV---------LFSPTPVTSK 198

Query: 190 SSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG 231
            +G           WYFPSPIK FRQS++SK +  +RSPL+RG
Sbjct: 199 GNG-----------WYFPSPIKVFRQSRVSKMIFQQRSPLYRG 201

The following BLAST results are available for this feature:

BLAST of Carg23392 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028262.1	4.0e-119	100.00	hypothetical protein SDJN02_09443, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6596728.1	2.0e-118	99.57	hypothetical protein SDJN03_09908, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022924447.1	8.3e-117	98.70	suppressor protein SRP40-like [Cucurbita moschata]	[more]
XP_023540514.1	1.1e-116	98.70	suppressor protein SRP40-like [Cucurbita pepo subsp. pepo]	[more]
XP_023005527.1	7.8e-115	96.96	vitellogenin-1-like [Cucurbita maxima]	[more]

BLAST of Carg23392 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg23392 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E8Z1	4.0e-117	98.70	suppressor protein SRP40-like OS=Cucurbita moschata OX=3662 GN=LOC111431922 PE=4...	[more]
A0A6J1KTD6	3.8e-115	96.96	vitellogenin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498490 PE=4 SV=1	[more]
A0A6J1HN71	6.2e-102	87.88	uncharacterized protein LOC111465171 OS=Cucurbita maxima OX=3661 GN=LOC111465171...	[more]
A0A6J1E664	1.1e-101	87.88	uncharacterized protein LOC111430968 OS=Cucurbita moschata OX=3662 GN=LOC1114309...	[more]
A0A0A0L6G5	6.0e-97	84.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009520 PE=4 SV=1	[more]

BLAST of Carg23392 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32690.1	2.8e-30	42.55	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G35200.1	1.1e-21	35.43	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34197:SF2	OS04G0591300 PROTEIN	coord: 1..230
None	No IPR available	PANTHER	PTHR34197	OS04G0591300 PROTEIN	coord: 1..230

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23392-RA	Carg23392-RA	mRNA