Carg23330 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23330
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	U11/U12 small nuclear ribonucleoprotein 65 kDa protein
Location	Carg_Chr06: 10446964 .. 10456149 (+)
RNA-Seq Expression	Carg23330
Synteny	Carg23330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTGTTGTGTTGATTCGATTCATTTTCTTCAAAATACTGTAGGTTCTTGATTACCCACTGTTATTGATCTGATTGAAATTGTTTGTTCTTTACCAAGTTTCTATGGAGACAATTGTATTTGGTTGTACATTTGTTAAAATTTGGTAAACACTTTTTTAGGTATGCTTATCCTCCTCCAGATGGCAATATCCTGACCAACATCGTTAATGCCCTCATAGCTGTCCCACGCTTTTATACACAGGTTGTTGTTTACAAATGAAATGGTAATTTATATGTTTTAAAGAGAAATTTAAAACTTATATGCTTAAAGTGAAGTTCAATTTTGAATGTTGCCTCTCGTGACCTCCTGAGGTTTTTTTGGTGACTTTTCTCAGTAGTTGTTGCTAGTGCTCCTTGCTCATGATGGTTGCTGGTCTTCTTCCTAGAAAAATAGAAACAAAACCTTCTCTTGTGGTTTTGGTCCAAGGAAGAAAGGTAGACAATGTAGGATTAAGGAATCTCATTTAAAATAAAAGGTTTGAGTTAGTTCTTGAGGAAGTTATGATTGTTTGGCTAACTAACTCCCTTGAGTATCTGCTGCTGCTTGCCCTGCACTCTCCAAAGTTCTATTGAAAGGTTGACTGTTGTGATGGGTTTATTTGGACTCAAAAGATTACAAACAAAAGAGGTTCCTTTCTTGAGATCATCAAGGTTTATAGATTGGGAGGTAAGAGAAATCTTGTTGTTCCTTCTAATAGAGATTAGATGGTTGGAAGTCCTTCCAGGAACTTCTTATAGAGTTTTTGGATGAAACATGAAAACCAAATGAGAAGCCAAAGAAACTCCCGAATAAAACCCTCATGGAAGGGAAGTGCGAAGGCTCCTCCTTTGAAGAGGTGTTGAAAAATGAACCAATGAATCTTGTTGTTCCTTCTGATAGAGATTAGATGGTTGGAAGTCCTGCAAGGAACTTCTTATAGAGATTTTGAATGAAACATGAAAACCAAATTAGAAGCCAAAGAAGCTCTCAAATAAAACCCTCATGGAAGGGAAGTGTGAAGGCTCCTCCTTTGCAGAGGTGTTGAAAAATAAACCAATAAGGAGAAAAAGATTCCTCAAAGTATGTTAGAGGAGGAGGGTTTTAGTCTTGTAGAAGCGGATAAGAAGGAAGTTACATTTTTTAAATGGGTTAAACCGTTGGTTATTACCAGAAGAGACTTCCACGATGATTGGGCAAAATTTTTGGAAACCCTTGACAAGCAGCCGGAGGAATCTTTCACTGTTAATCTTTTCTTCCCTGATAAAGCCCTTTTGTTGTGCCCCTTGACAAAGTGTACAAGGCTACTAGCTACGATTGTAAGGGGGGTTACATTAGGAGCCTTTACAATGAAGTTAGAAAGACAGGTCCCTTGGGAGAATGAGAGAACTACAAGGGTCCCCTCTTACAGGGGTTGGATAAAATTTAAAAAAAAAAAAAAGAAAAAAAAAAGAAAAAAAAAAAATCCCTTGCATTTATGGAGCCTAGCCATGTTCAAGGCGATAATTGATTGCTTTGAGGGGATTTTGTGGACTATGCAAATCAAAGCTCTTCCCTCATTGAATGCTTAGAAGTTGCAATTGAAGTGCAAGGAATTACTGTGGATTCATCCCCCAATGAAGTGAAAATCCTTGATAGAGAACAAGTGTCTTCCTCCCAGATGATTGTGCTCCAAGATGGCTGGTTGTTAGCCTAAAAGAAAGTTGAAGTTCACAGTGGACTTTAGTCTGAAGCAGCCACAAGGTTCCATGACAATGACATGAGATCCGGTTCTAATCTGATAGATTTGTGGAGGTTAAGGGACAGTTTTTTTTTTTTTACTCATCAGTAACTAGTTTTTACCCGAATATTCCAATGTTGCAGGGAGAGGTTTCAGTCTTCTACCTAAATTTGAATCACATGTTCGAGAAGATTGACGGTGGACCCCACACGGTTGATCGTAGCCTTCGCTCAAGCTCCACACGAATACAGACTCCCCTGTCAAGTCAAAGTAACAGTGGTCCTTTGCATCAGGGAGACATTCCAAATTTCCCTCTAATTTCAGGGGGAAAAGGAAAATTAGTCAAATTTGTGGAAGATTTAGAGAAGGGTCGTGGAAAAGTCTTTTTTTTTTTTACAAGGGGAAAATTTTCTCTACAAGCAATACCAAGGCTAAGCTTTGCAATAAAAATTTGATGATGAAAAAGATGTGGTAAAGAAAAACGAAAGAGGGGTAGAGGATTATGTAGAGATCCTTGAGAATTTTCAGCTTTGTTTTCAAGAAAATGAAGCTTTCCCTTTATCTTTAGAAGTGGATACAACCTTGGCTATTGAGAAAAGAAAAGATGGGAATGATGGTACTATAATGAAAGTAGATCACGTAGAGGAAACTCAAGAGGAGAGGAAAAGGAAAAAAGTCAAAAGGGTTGGTGGAGTTATGTTCCTTCACCGTTTAGCAGAAGTCTGGTTAAAGCTTTGAAAAGATGGAAATTGTGTATATTCCTAGAAGAGGCAATCCAATGGGCAAGAAGAACGTTAGATAGTTGAATGGCATTTTGAGAACATTGGGAGAACGAACCAGAGGAAGTAGATGAAGGGGTTTGTCTCACGAAGATAGTCTTATGGAACGTTAGAGGCCTTGGTGCTCTCTCCAAAAAGTGCTTGTTAAGGAGTTTTTAGTTAAAATTAGTCTGGATGTTGTGGTTCAATTTGGTCGAATGTTACTTGATGTTTCTTATTAAAAAAAAAAAAAAAAAAAAAACTTGTATGTTTAACCTATGGAAGCACATTTGAAGTAAATACTCACAACTTCTTTTTTTAATTGTAGGTGTTGCATTTAATGAATAAGATGAACATTCCAGCTCCATTCACTCACAACTTCTTTTTTTAATTGTAGGTGTTGCATTTAATGAATAAGATGAACATTCCAGCTCCATTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTCCGTTCCTGCACCACCGTCATCACTAACATTGCCACCACTTCCTCCTCCTGCCACTCCAAGGCCTCAAATAACAAATGTGTCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGTAACTTGCCTAGATTGATAAATGTAGGTTGCACATATTTGGTTCACTTTAAGTACATAGATGCATTTGTGCACTCATGGTTTGTTGGTGGAATGCGGTTATTTTGAAGATTTTGGAGGATGCTGGGCAGTGTATTTAGATACTTACCTCTTTGTTGCTTTGAATTTTATTTTCCTTGGTACACCACACAATTTACTTTATGAAAAGATTGAATAGAAAGGCATTTTCCGTGAAAACTTAAGCAGTGATATAGGAGTAATTTTTTTGTTTTTTCCCTGATTAAGTATAATCTGCAGAAAACTCTCACCTTGTTGAGCAAGATAATCTAATGTAAGGATAGCATGGTTAAATGAAAGGTTTGGCACCAGACTCTTAGTATGAAGACTAACTACCATCAAAGGTCCAAATTTAGCATCTTCCCTATTCTCTCAAGTGCTAAATTCGTGAGCAGCTCGCTAGGGATGGCCATTCCTCCATAACAGCATCAGAAAAGTTTCTCCCATATTTGTGATTCCATCCTCTCAAAGGATTGGTCCAACATTGACAAATAAGGGAGCCCTTGGCGTTTGCAATGCTAAAGACAGTTGAAAAGGCCAAGTGGGGAGGAGCATTGATAAGCCAGGGATCCTCCCAAAATAGAACTTTATCTCCATTACCTACAGCCACCTCTTAACACGTATTGGCCAAGTTACAATAAGAAGTAGAGACCTAGGGACTGAAGTTGAATGGACATTTAGAAGAAGGGTTCCATTCTTCAAATGAGAGTGGTGAGACTGGTGTTTTGTTGAAGTTGTTACCTACAATCTTTAGTTGCATCCCGTTTATTTTTTTTTCTTTTTGGTAAAAATACTTTCCTTTGTCCTTGTCTTCTTAGTTCTCCTGTATTGTTTGATTTTTATTCTATTCATTTTTTTACTACTTTAAGAAGGTATCTTTCCTTATTTTATGAGGCCTGATATAATAATCTACTCCCTTTTGTCTTGGCTTACTGATTAATTGGATATAAATGTGCATTAGGATGTGGAAGGAAAATATAATTCAAGTGGAGTCTCAAAAACTGCAAGATCAGGAAACAAGCGGTCTAGGTGTGAAGCAATTGTAGGCCCCGGGATAGACAAAGATGTGGCTCATGAGACTGTTGGGGTGAAACCTTCCACATTGGTCCCCAAAGAGATTCCGATGATAAAAAAGAAAAACCCAGTGTTTCAGGTTGCTTTTATCATTAGATATAGCTAATTGGCATATGCTTTATTTATATGATTCATCAAATTCACTTGTTTAGTTGTTGCAGTTTAAAATTGCCCCTAAGGTGGTTCATGACGGAAAGCAGGAAGGAAAGGGGGATGATATTAATAATGAGGTCGAAGAGACAGAAAAGGAAGCAGCAGATCTTAAATCCTATGCAACACTCGAAGATTTAGAGAGAGGTAAATTGCCTCCAGAAGAAATTCTATCACTTCCAATGTTCAAGGTACTTTACCATGTGATATTTTAATGCTCAAGTATGAAACTACTACATGTTATTCGTACATTCATTTATTTAAGCTCCATTTCTTGTATATGTTTTAAAAAATTATTTAGTGAGGGAAAAAAAAGTGCTTTTGAAGATGGTTAAACATTTTTCTTAAATAAAAACTTACCACATATGCTTATAAAAAAGGCTTACTGCATAAGAAATTTGACCATGATTTGGTTCCTATTGGTTTTAAATTCAGAATTTCGACAAAGGTAGTTCTAAGACGTTTTGCTTTTGTTTTCTTGGACAATCATGGGCATCTTGTTCCTTGGGGTGTGCAACCTTATTTTCTTGTGAAATATTTGGCTGGAGAGAGATAGGAGGATTTTTAGAAGGGTTGTGTGTCAGTAGAGACTAGAGAGGTATGGTCCACGATTAGATTTAATGACTCTCTTTGGGTGTCAATGACCAAATGGGTTTGGTATTGCTCTTTTGTCTCTTGTTAGCAAAGTTGTGAATTTCTAGATGCGGATATTTTAAGTTTCTGCTTTGTTGACAGCATTTTGGATATCGATGTTCCTTCTTTTGTTGATGCTTGTTGGGTTGGCCAGTGGTCAATAAAGGTTATGAGAATAATTAAGGGTTTAGAGGGAAGGAGTTCAATAAATTTTCTTTTCTTTGTTTTAATAAATTTTTCTTTCATTTCCCTGGTTTAGGGTTGGGTATATATAAGCTACCTTTTCTTTTAATTTACCATTTGAGTATGATATAAAAATAATGTTGGAAATTTCATGGATATTGCAGAACTATACTGCTGGGAGTCCTACTTCGGTGCTGTATATTAAGAACTTAGCCAAAGATGTAGTGAATGATGACCTCTACTATATATTTGGTAAGTTTCTTTGCCCCAATTCAGCCTGTGTGCATATATGGAAACACACGGCACTATTTTTTCACTATTTGTTATTTTTGTTATTTTCTCATGAACTGATTGATATTAAGGAATCTTGGGTAGGGGTTCAAATATGAAGCAAAGTCGTGAGATGGCAAGAGGATTGGGGGAATTTGGGATGTACTCCGTGTGAATAATTTTTGACGTATTTATGGATGAAAACTCCCCCTTTGACCTCTTACTGTGATGCCCCTTGAAACGGGTGATGTATTATGACAATAAAAGGCAAACAAGCTAAGGGCTAGTGGTTGAGAATACCCCTGCCCAAACTCCTACAAAAGAGCCTTTCCATTGTTAATAATCACGAGGTTGTGATTACAAAAGTACTTCTTGTGGTTTGAGCAGACCAAGAGATTTTATGCTGCATAGAATTATAAAAATAATCCACCAGAGTCGACTTGTCTTTGGAAATTCTTTTGTGTCACTCTTTCCAAATAAGTCAAAGGCCTTTTAAGAAGTTATGTTAAAAGTTTTCTAGAAGCCAAGAATCGACACAATCAGGGAGACAATATGCCATACCAGATTCATTCAAAATGAAACATCAGGCCTTCTGAGCATAAAAGCACTGAATGAAGATGTGATTGAAGGTCTCATTTTCATTATAGCACAAACACTCGACTGTAAGAGGTAAACTTTGGTGTTAAGGCTTTTTGTACACCGAAGTCTGAATAAAAAAAATTTAATTTTCTTTGGTATCTTGAACTTTCATATGTAGTGTTCACCAAAGGAGTTCTTTGGTGAGATGAAGGAAGATGGACTTCACATAACAAAAGCCATTTGGATCTAACTTCCGCCAGATTCTGTCTTTGGCCCCTAGATAGCTGGACCTCATCTAGTTTTTCCGAAAAATCGTCCCAGCTAGCCACCCCTGTATTGAACATTCGAACAGACACCAAGAGTTTGTGAAAAGTAGTTTTCTTATGTTCGATAAAATTATGCCTCTGACCTTTTGGTTACATGAATATATCGAGATGTAAATCTGAGATTTCATAAATGGGCATCTATACTATTATGTTACTGCCACCTCATTTGTAATCCTTGGATAGGCCTATATATTTGTCTTTTTTAAGACAACAATTGCAATGATCTATCCCGATCACCCTATATATTTGTTTTTTGAATTCATCTTTTCAATGGGAGGTTTTAAATATGTTGCTTTTAAATTGTATTTTGTAGGATCATTATTTGGAGGTATTGATGAAGCCAAATCTGCTCTCACTGTGAAGCTAATGCAGGTTAGGTATTGTTGTCAGATGTGTACGTTTAGATAAGAATTTTTTGGATAACCGAGAACTATAATTTCTTCCCTGATTACTTGAAGCACATCTGTAAAGTTGTCAGATGTCTACAGTTTGATAAAAAGCAACACCTGCAAAGTTGTCTCATTCTCTGAGTTGGGGAGATAAGAGTATGTATAATGTGCTTTATTGTTAGGCATCGGCTTTTACAAAGATAAATAAGCATAAATAAAGCAAGTCTTAGAAAAAGCATTGTGTTGTAGATGACCTAAAGATGCGGTTCTCAATATTGCAATAATGCATAGTGTTGTCAACTCCTCTCTACCATTTAAATGCGACCCTGGTCACTATTTTTAAAGGGTGAAAGGCCACAGCTTAGCCATTAAAAGTCACAATATATAGAAAGTAGTAAAACCATATATTAAAGTTCCAATATTAAGCATGGAACACTAAGAATAAAGGGTTAAGTATTTGAAGACAACAAATCTTATCAATCTCTTGGATTGGATCCCTTTTGTAGCTAGTGTTGGGACTCCTGTTTGTGGGTGTGTTTTTTTTGTATACCCTTGTATATTTCTTCATTTTTCTCAGTGAAAGCTCGGTTTCTTATAAAAAAAACAATTATATCAGTCTTGCTAACCATGTTGGGAACATTTCTCTTCAAGTTTGATGCTGAGGAAGGTAGAAATCGATTATAACATGACCTTTTATCAAGTGAATAGAGAAATTGTATCTAAAGAAAGTATCTAAATGCTGCAAGCAACAAACCACGGAAAGCTTAGAAAAAAAAATAATCAGATTAAACTCGGACTAGGATAACAATTGTTCAAAAGAATACAACCTATATTATCAAATAAGAGCTTACTTACCTCATAATCCAACTACTTGGATGTCTAGCGTGGCTTCAATGTTTTTTCTTATTAAATTTCTTGAAAGACAAGCAGAAAGTAATTATTGGCCGTCCAAGTGTATTTAATTATGACTTGGGGTTCTGAAGTTTCCTTATTTTGAATTTCAGGAGGGAAGAATGAGGGGCCAAGCATTTGTTACACTTCCATCAGTTGAACTTGCGCAACATGCTTTGGTTAGTAGTAAAATTCAGTATTTGGTTTACACCAGGGTTATTTTTGAATTAATAGCAATAAGATAAAAGAAAGCTAGAGGCATGAAGCTATGGTGTAGAAAATCACTAGTTCACTTGACACCATAAAAGCGACTCTGTTACAAAGGCTTAATTGTTTGTTCGTTAATATTTTGTGCAACTTAAGTTCTATGCTTGCTGGCTCATAGTTGGTACAAAAGCTTACCTTCGCTGGTGATTTATATTTATTCACTAGGAAGGGTTAATGGCAGTTGCTCTTTATTTATTTATTATTATAATTTTTTGTAAAATCTCTTTGTTACCTTTGTTTTCTTCCGAATAAATATGATATATGCATCTAGAGTTTATGTATGGGAATGTCTGGGTGAAAAACCACCCGAAAAACTACCCAGCCATTCCAGGGGGCTGGTATCTCTCCCTTATTTTAGAACCTCAGCAAAATGCTAACTTCCCTACTCCTGTACTCATATGACACGCACAAGATAAATAACTGTCAGACTCAACTTTTCCCATATTACCTCTCCTAAGATATGTTTTCACAATTGGTGGCCTTGCAAAATACTGCTAAGACTTCTCTTTTGGATGCCCTTCGGCTTGAAATACTATAGAATTGTTATTTCAAATACCTGAAGGTTGTAGTGTTATTTGTGGTTGCGTTTTTGGTTTGTTCTATTCTTCCTGTAGGAGTAAACTGATTTACATGACTAAGATGCCACATTTATCGTTTTGACAGAATCTAGTAAATGGTTACGTATTCAAAGGCAAGCCAATGATTATCCAGTTTGGACGCAATCCAGGAGCTGCCAAGGGAGTTAAAGTCGGCTCCTAGTACCCCCTGAAACCCTAAAATATAAGCTTATGCCGGCTCACGGGAAATTTACAGTTACTCCCATTGAGAATTAGGTCTTGTATGAAGTGATATATTTTTAATTTTTAAAGTAGTATAGATGTGATAAACAATGTAAAGCAGCACAGAAAGTTTCATACTACTGTTGTACTAAAAATTTCCCAACTTGCATGCTAACCAGCATGTAAACAGCTTAGTGGGCGCTTAATGTTATTAATAGCTTGCACGGCTGCTCGTTAGGAGGAGGCCATTTGAATCAAATGAGGCTGTATCACCTGGCTTCCAAAAACGGAGGGAGTTGGCGTTGCGTGTGCTAAATGGTCAATTTTTTTTGGTCGTTTGGTGCAATTGTTGAGTTGGTTTGTGCAGAGATTTGTTATGTTAAACTGAGTCAAGGATTTGAGTTGTATGTTCAGTTCAGTTCTAGGAATATTTGTTAGGTGATTGGAGTTGAAAAAAATTATAATACTTGCAACACAAGTGAAAAATTATATTCGTGAATTTTTT

mRNA sequence

TGTTGTTGTGTTGATTCGATTCATTTTCTTCAAAATACTGTAGGTTCTTGATTACCCACTGTTATTGATCTGATTGAAATTGTTTGTTCTTTACCAAGTTTCTATGGAGACAATTGTATTTGGTTGTACATTTGTTAAAATTTGGTAAACACTTTTTTAGGTATGCTTATCCTCCTCCAGATGGCAATATCCTGACCAACATCGTTAATGCCCTCATAGCTGTCCCACGCTTTTATACACAGGTGTTGCATTTAATGAATAAGATGAACATTCCAGCTCCATTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTCCGTTCCTGCACCACCGTCATCACTAACATTGCCACCACTTCCTCCTCCTGCCACTCCAAGGCCTCAAATAACAAATGTGTCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGATGTGGAAGGAAAATATAATTCAAGTGGAGTCTCAAAAACTGCAAGATCAGGAAACAAGCGGTCTAGGTGTGAAGCAATTGTAGGCCCCGGGATAGACAAAGATGTGGCTCATGAGACTGTTGGGGTGAAACCTTCCACATTGGTCCCCAAAGAGATTCCGATGATAAAAAAGAAAAACCCAGTGTTTCAGTTTAAAATTGCCCCTAAGGTGGTTCATGACGGAAAGCAGGAAGGAAAGGGGGATGATATTAATAATGAGGTCGAAGAGACAGAAAAGGAAGCAGCAGATCTTAAATCCTATGCAACACTCGAAGATTTAGAGAGAGGTAAATTGCCTCCAGAAGAAATTCTATCACTTCCAATGTTCAAGAACTATACTGCTGGGAGTCCTACTTCGGTGCTGTATATTAAGAACTTAGCCAAAGATGTAGTGAATGATGACCTCTACTATATATTTGGATCATTATTTGGAGGTATTGATGAAGCCAAATCTGCTCTCACTGTGAAGCTAATGCAGGAGGGAAGAATGAGGGGCCAAGCATTTGTTACACTTCCATCAGTTGAACTTGCGCAACATGCTTTGAATCTAGTAAATGGTTACGTATTCAAAGGCAAGCCAATGATTATCCAGTTTGGACGCAATCCAGGAGCTGCCAAGGGAGTTAAAGTCGGCTCCTAGTACCCCCTGAAACCCTAAAATATAAGCTTATGCCGGCTCACGGGAAATTTACAGTTACTCCCATTGAGAATTAGGTCTTGTATGAAGTGATATATTTTTAATTTTTAAAGTAGTATAGATGTGATAAACAATGTAAAGCAGCACAGAAAGTTTCATACTACTGTTGTACTAAAAATTTCCCAACTTGCATGCTAACCAGCATGTAAACAGCTTAGTGGGCGCTTAATGTTATTAATAGCTTGCACGGCTGCTCGTTAGGAGGAGGCCATTTGAATCAAATGAGGCTGTATCACCTGGCTTCCAAAAACGGAGGGAGTTGGCGTTGCGTGTGCTAAATGGTCAATTTTTTTTGGTCGTTTGGTGCAATTGTTGAGTTGGTTTGTGCAGAGATTTGTTATGTTAAACTGAGTCAAGGATTTGAGTTGTATGTTCAGTTCAGTTCTAGGAATATTTGTTAGGTGATTGGAGTTGAAAAAAATTATAATACTTGCAACACAAGTGAAAAATTATATTCGTGAATTTTTT

Coding sequence (CDS)

ATGAATAAGATGAACATTCCAGCTCCATTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTCCGTTCCTGCACCACCGTCATCACTAACATTGCCACCACTTCCTCCTCCTGCCACTCCAAGGCCTCAAATAACAAATGTGTCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGATGTGGAAGGAAAATATAATTCAAGTGGAGTCTCAAAAACTGCAAGATCAGGAAACAAGCGGTCTAGGTGTGAAGCAATTGTAGGCCCCGGGATAGACAAAGATGTGGCTCATGAGACTGTTGGGGTGAAACCTTCCACATTGGTCCCCAAAGAGATTCCGATGATAAAAAAGAAAAACCCAGTGTTTCAGTTTAAAATTGCCCCTAAGGTGGTTCATGACGGAAAGCAGGAAGGAAAGGGGGATGATATTAATAATGAGGTCGAAGAGACAGAAAAGGAAGCAGCAGATCTTAAATCCTATGCAACACTCGAAGATTTAGAGAGAGGTAAATTGCCTCCAGAAGAAATTCTATCACTTCCAATGTTCAAGAACTATACTGCTGGGAGTCCTACTTCGGTGCTGTATATTAAGAACTTAGCCAAAGATGTAGTGAATGATGACCTCTACTATATATTTGGATCATTATTTGGAGGTATTGATGAAGCCAAATCTGCTCTCACTGTGAAGCTAATGCAGGAGGGAAGAATGAGGGGCCAAGCATTTGTTACACTTCCATCAGTTGAACTTGCGCAACATGCTTTGAATCTAGTAAATGGTTACGTATTCAAAGGCAAGCCAATGATTATCCAGTTTGGACGCAATCCAGGAGCTGCCAAGGGAGTTAAAGTCGGCTCCTAG

Protein sequence

MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEEDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGVKVGS

Homology

[Close]

BLAST of Carg23330 vs. NCBI nr
Match: KAG7029165.1 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 547.7 bits (1410), Expect = 5.8e-152
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0


Query: 1   MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEE 60
           MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEE
Sbjct: 1   MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEE 60

Query: 61  DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN 120
           DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN
Sbjct: 61  DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN 120

Query: 121 PVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSL 180
           PVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSL
Sbjct: 121 PVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSL 180

Query: 181 PMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQ 240
           PMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQ
Sbjct: 181 PMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQ 240

Query: 241 AFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGVKVGS 287
           AFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGVKVGS
Sbjct: 241 AFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGVKVGS 286

[Close]

BLAST of Carg23330 vs. NCBI nr
Match: KAG6597718.1 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 544.7 bits (1402), Expect = 4.9e-151
Identity = 285/286 (99.65%), Postives = 285/286 (99.65%), Query Frame = 0


Query: 1   MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEE 60
           MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEE
Sbjct: 81  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEE 140

Query: 61  DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN 120
           DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN
Sbjct: 141 DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN 200

Query: 121 PVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSL 180
           PVFQFKIAPKVVHDGKQEGK DDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSL
Sbjct: 201 PVFQFKIAPKVVHDGKQEGKEDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSL 260

Query: 181 PMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQ 240
           PMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQ
Sbjct: 261 PMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQ 320

Query: 241 AFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGVKVGS 287
           AFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGVKVGS
Sbjct: 321 AFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGVKVGS 366

[Close]

BLAST of Carg23330 vs. NCBI nr
Match: XP_022932769.1 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita moschata] >XP_022932770.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita moschata] >XP_022932771.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita moschata])

HSP 1 Score: 535.4 bits (1378), Expect = 3.0e-148
Identity = 281/286 (98.25%), Postives = 283/286 (98.95%), Query Frame = 0


Query: 1   MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEE 60
           MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITN+SSDESEMESSEE
Sbjct: 81  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNMSSDESEMESSEE 140

Query: 61  DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN 120
           DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN
Sbjct: 141 DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN 200

Query: 121 PVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSL 180
           PVFQFKIAPKVVHD KQEGK DDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSL
Sbjct: 201 PVFQFKIAPKVVHDRKQEGKEDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSL 260

Query: 181 PMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQ 240
           PMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQ
Sbjct: 261 PMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQ 320

Query: 241 AFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGVKVGS 287
           AFVTLPSVELAQ ALNLVNGYVFKGKPMIIQFGR+PGAAKGVKVGS
Sbjct: 321 AFVTLPSVELAQQALNLVNGYVFKGKPMIIQFGRSPGAAKGVKVGS 366

[Close]

BLAST of Carg23330 vs. NCBI nr
Match: XP_022972081.1 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita maxima] >XP_022972082.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita maxima] >XP_022972083.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita maxima])

HSP 1 Score: 531.6 bits (1368), Expect = 4.3e-147
Identity = 278/281 (98.93%), Postives = 279/281 (99.29%), Query Frame = 0


Query: 1   MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEE 60
           MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITN+SSDESEMESSEE
Sbjct: 81  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNMSSDESEMESSEE 140

Query: 61  DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN 120
           DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN
Sbjct: 141 DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN 200

Query: 121 PVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSL 180
           PVFQFKIAPKVVHD KQEGK DDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSL
Sbjct: 201 PVFQFKIAPKVVHDRKQEGKEDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSL 260

Query: 181 PMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQ 240
           PMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQ
Sbjct: 261 PMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQ 320

Query: 241 AFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG 282
           AFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG
Sbjct: 321 AFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG 361

[Close]

BLAST of Carg23330 vs. NCBI nr
Match: XP_023540623.1 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita pepo subsp. pepo] >XP_023540624.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita pepo subsp. pepo] >XP_023540625.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 530.4 bits (1365), Expect = 9.5e-147
Identity = 278/281 (98.93%), Postives = 279/281 (99.29%), Query Frame = 0


Query: 1   MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEE 60
           MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITN+SSDESEMESSEE
Sbjct: 81  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNMSSDESEMESSEE 140

Query: 61  DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN 120
           DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN
Sbjct: 141 DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN 200

Query: 121 PVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSL 180
           PVFQFKIAPKVV DGKQEGK DDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSL
Sbjct: 201 PVFQFKIAPKVVIDGKQEGKEDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSL 260

Query: 181 PMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQ 240
           PMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQ
Sbjct: 261 PMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQ 320

Query: 241 AFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG 282
           AFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG
Sbjct: 321 AFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG 361

[Close]

BLAST of Carg23330 vs. ExPASy Swiss-Prot
Match: Q8RWV8 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP65 PE=1 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 7.8e-75
Identity = 162/281 (57.65%), Postives = 199/281 (70.82%), Query Frame = 0


Query: 1   MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEE 60
           MNKMN+P PFRL LPTPPLP + P                 +  + + SS ESEMES E+
Sbjct: 189 MNKMNLPPPFRLALPTPPLPKAGP----------------QQTDLEHQSSSESEMESDED 248

Query: 61  DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN 120
                        T++SG KR+R   +VG G+DKDV HETVGVKPS+L PKEIP I+K  
Sbjct: 249 -----------IGTSKSGRKRARHGFLVGLGMDKDVPHETVGVKPSSLTPKEIPRIRKNK 308

Query: 121 PVFQFKIAPKVVHDG-KQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILS 180
            V Q KI  KV  D  K+E + +D     +E +++ ++LK +A+LE+LE+G+LPP++ILS
Sbjct: 309 HVMQIKITSKVTQDEYKEESENED---PADEPKEKDSNLKPFASLEELEKGRLPPQDILS 368

Query: 181 LPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRG 240
           LPMFKNYTAG+P+ VLYIKNLAKDVV DD YYIFGS F   + AKS+L V+LMQEGRMRG
Sbjct: 369 LPMFKNYTAGNPSVVLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGVRLMQEGRMRG 428

Query: 241 QAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK 281
           QAF+T PSVE+A  ALNLVNG+VFKGKPMIIQFGR PGAAK
Sbjct: 429 QAFLTFPSVEVAHRALNLVNGFVFKGKPMIIQFGRTPGAAK 439

[Close]

BLAST of Carg23330 vs. ExPASy Swiss-Prot
Match: F1Q8J0 (RNA-binding region-containing protein 3 OS=Danio rerio OX=7955 GN=rnpc3 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.8e-21
Identity = 106/321 (33.02%), Postives = 157/321 (48.91%), Query Frame = 0


Query: 1   MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQ-ITNVSSDESEMES-S 60
           MNKMN+P+PFR P+  PP    +P+ P     PP PP   P P+   + S +ESE ES  
Sbjct: 177 MNKMNLPSPFR-PVTAPPPMFEMPSGPLP---PPFPPENPPLPEHDESGSEEESEYESED 236

Query: 61  EEDVEGKYNSSGVSK-------TARSGNKRSRCEAIVGPGIDKDVAHETVG--VKPSTLV 120
           EE+ E      G+           ++ +KR + +      I K  +H   G  ++P+ + 
Sbjct: 237 EEERERMIRLMGLVNQPCKRPLRTKTSSKRKKPKLKDLLFIPKPDSHGPSGPVLQPADVF 296

Query: 121 PKEIPMIKKKNPVFQFKIAPKVVHDGKQEGKG------------DDINNEV--------- 180
            +   + +KK    +F I+ +V      EG G            D  + EV         
Sbjct: 297 EQPHALGQKK---IEFHISSEV--SAILEGPGQNQKLPFADATEDTPDMEVSAQETTEGF 356

Query: 181 ------------EETEKEAADLKS-YATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVL 240
                       EE ++E  D+ S + +  +LERG+L  +EI  L +FK Y  G PT  L
Sbjct: 357 GKIYPSAQVPRQEEEQEEDEDIPSEFISRRELERGRLSRDEIKKLSVFKKYEPGEPTCRL 416

Query: 241 YIKNLAKDVVNDDLYYIFGSLFG-GIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHA 276
           Y+KN+AK V   DL +I+G       +E ++   + LM+EGRM+GQAF+ LPS   AQ A
Sbjct: 417 YVKNVAKHVEEKDLKFIYGRYIDISSEEERNMFDIVLMKEGRMKGQAFIGLPSERSAQKA 476

[Close]

BLAST of Carg23330 vs. ExPASy Swiss-Prot
Match: Q5R6C7 (RNA-binding region-containing protein 3 OS=Pongo abelii OX=9601 GN=RNPC3 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.4e-21
Identity = 100/330 (30.30%), Postives = 161/330 (48.79%), Query Frame = 0


Query: 1   MNKMNIPAPF-----RLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRP-QITNVSSDESE 60
           MNKMN+P PF     R P+    +P   P PP+S    P PP   P P +   +SS+ESE
Sbjct: 190 MNKMNLPTPFGPITARPPMYEDYMPLHAPLPPTS----PQPPEEPPLPEEDEELSSEESE 249

Query: 61  MESSEEDVEGKYNSSGVSKTARSGNKRSRC---EAIVGPGIDKDVAHETVGVKPSTLVPK 120
            ES++++   + N   + + A    KR +      +      KD+ +  +    S+L P 
Sbjct: 250 YESTDDEDRQRMNK--LMELANLQPKRPKTIKQRHVRKKRKIKDMLNTPLCPSHSSLHPV 309

Query: 121 EIP--MIKKKNPV----FQFKIAPKV----VHDGKQEGKGDDINNEVEETEKEAADL--- 180
            +P  +  +  PV     +F I+  +      D ++E   ++ N+++  TE +A+++   
Sbjct: 310 LLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKDLEKEQNCEEKNHDLPATEVDASNIGFG 369

Query: 181 ----------------------KSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLY 240
                                     +  +LE+G++  EE+ +L +F++Y  G P   +Y
Sbjct: 370 KIFPKPNLDITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIY 429

Query: 241 IKNLAKDVVNDDLYYIFGSLFGGIDEAKSAL-TVKLMQEGRMRGQAFVTLPSVELAQHAL 286
           +KNLAK V   DL YIFG       E +  +  ++LM+EGRM+GQAFV LP+ + A  AL
Sbjct: 430 VKNLAKHVEEKDLKYIFGRYVDFSSETRRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKAL 489

[Close]

BLAST of Carg23330 vs. ExPASy Swiss-Prot
Match: Q96LT9 (RNA-binding region-containing protein 3 OS=Homo sapiens OX=9606 GN=RNPC3 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.1e-20
Identity = 99/330 (30.00%), Postives = 161/330 (48.79%), Query Frame = 0


Query: 1   MNKMNIPAPF-----RLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRP-QITNVSSDESE 60
           MNKMN+P PF     R P+    +P   P PP+S    P PP   P P +   +SS+ESE
Sbjct: 190 MNKMNLPTPFGPITARPPMYEDYMPLHAPLPPTS----PQPPEEPPLPDEDEELSSEESE 249

Query: 61  MESSEEDVEGKYNSSGVSKTARSGNKRSRC---EAIVGPGIDKDVAHETVGVKPSTLVPK 120
            ES++++   + N   + + A    KR +      +      KD+ +  +    S+L P 
Sbjct: 250 YESTDDEDRQRMNK--LMELANLQPKRPKTIKQRHVRKKRKIKDMLNTPLCPSHSSLHPV 309

Query: 121 EIP--MIKKKNPV----FQFKIAPKV----VHDGKQEGKGDDINNEVEETEKEAADL--- 180
            +P  +  +  PV     +F I+  +      D ++E   ++ N+++  TE +A+++   
Sbjct: 310 LLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKDLEKEQNCEEKNHDLPATEVDASNIGFG 369

Query: 181 ----------------------KSYATLEDLERGKLPPEEILSLPMFKNYTAGSPTSVLY 240
                                     +  +LE+G++  EE+ +L +F++Y  G P   +Y
Sbjct: 370 KIFPKPNLDITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIY 429

Query: 241 IKNLAKDVVNDDLYYIFGSLFGGIDEAKSAL-TVKLMQEGRMRGQAFVTLPSVELAQHAL 286
           +KNLAK V   DL YIFG       E +  +  ++LM+EGRM+GQAF+ LP+ + A  AL
Sbjct: 430 VKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKAL 489

[Close]

BLAST of Carg23330 vs. ExPASy Swiss-Prot
Match: Q4G055 (RNA-binding region-containing protein 3 OS=Rattus norvegicus OX=10116 GN=Rnpc3 PE=1 SV=2)

HSP 1 Score: 101.3 bits (251), Expect = 1.9e-20
Identity = 100/327 (30.58%), Postives = 149/327 (45.57%), Query Frame = 0


Query: 1   MNKMNIPAPFRLPLPTP-----------PLPPSVPAPPSSLTLPPLPPPATPRPQITNVS 60
           MNKMN+P PF      P           PLPP+ P PP     PPLP       +  ++S
Sbjct: 190 MNKMNLPTPFGPITARPPMYEDYVQLHAPLPPTSPQPPEE---PPLP------DEDEDLS 249

Query: 61  SDESEMESSEEDVEGKYNS-----------SGVSKTARSGNKRSRCEAIVGPGIDKDVAH 120
           S ESE ESS+E+   + N                K      KR   + +  P       H
Sbjct: 250 SKESEYESSDEEDRQRMNKLMELANFQPKRPKTVKPRHVRKKRKIKDMLTVPSPASQSLH 309

Query: 121 ETVGVKPSTLVPKEIPMIKKKNPVFQFKIAPKV---------VHDGKQEGKG-------D 180
               + PS +  +  P+  KK    +F I+  V              +E          D
Sbjct: 310 PV--LLPSDVFDQPQPVGNKK---IEFNISTNVPAALNKDLETEQNNEEKNSDSPDTGLD 369

Query: 181 DIN------------NEVEETEKEAADLKS-YATLEDLERGKLPPEEILSLPMFKNYTAG 240
           D N            N  EE ++++ ++ S + +  +LE+G++  EE+ +L +F++Y  G
Sbjct: 370 DSNTGFGKLFPKPNVNITEEIKEDSDEMPSQFISRRELEKGRISREEMETLSVFRSYEPG 429

Query: 241 SPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSAL-TVKLMQEGRMRGQAFVTLPSV 276
            P   +Y+KNLA+ V   DL +IFG       E +  +  ++LM+EGRM+GQAFV LP+ 
Sbjct: 430 EPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNE 489

[Close]

BLAST of Carg23330 vs. ExPASy TrEMBL
Match: A0A6J1EXB4 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111439218 PE=4 SV=1)

HSP 1 Score: 535.4 bits (1378), Expect = 1.4e-148
Identity = 281/286 (98.25%), Postives = 283/286 (98.95%), Query Frame = 0


Query: 1   MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEE 60
           MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITN+SSDESEMESSEE
Sbjct: 81  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNMSSDESEMESSEE 140

Query: 61  DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN 120
           DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN
Sbjct: 141 DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN 200

Query: 121 PVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSL 180
           PVFQFKIAPKVVHD KQEGK DDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSL
Sbjct: 201 PVFQFKIAPKVVHDRKQEGKEDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSL 260

Query: 181 PMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQ 240
           PMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQ
Sbjct: 261 PMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQ 320

Query: 241 AFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGVKVGS 287
           AFVTLPSVELAQ ALNLVNGYVFKGKPMIIQFGR+PGAAKGVKVGS
Sbjct: 321 AFVTLPSVELAQQALNLVNGYVFKGKPMIIQFGRSPGAAKGVKVGS 366

[Close]

BLAST of Carg23330 vs. ExPASy TrEMBL
Match: A0A6J1I4Z6 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111470724 PE=4 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 2.1e-147
Identity = 278/281 (98.93%), Postives = 279/281 (99.29%), Query Frame = 0


Query: 1   MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEE 60
           MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITN+SSDESEMESSEE
Sbjct: 81  MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNMSSDESEMESSEE 140

Query: 61  DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN 120
           DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN
Sbjct: 141 DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN 200

Query: 121 PVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSL 180
           PVFQFKIAPKVVHD KQEGK DDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSL
Sbjct: 201 PVFQFKIAPKVVHDRKQEGKEDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILSL 260

Query: 181 PMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQ 240
           PMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQ
Sbjct: 261 PMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRGQ 320

Query: 241 AFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG 282
           AFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG
Sbjct: 321 AFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG 361

[Close]

BLAST of Carg23330 vs. ExPASy TrEMBL
Match: A0A6J1DFW4 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020131 PE=4 SV=1)

HSP 1 Score: 468.4 bits (1204), Expect = 2.2e-128
Identity = 249/282 (88.30%), Postives = 259/282 (91.84%), Query Frame = 0


Query: 1   MNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPATPRPQITNVSSDESEMESSE 60
           MNKMNIPAPFRLPLPTPPLPPS+PAPPS SLTLPP P P TPRP +TN+SSDESEMESSE
Sbjct: 81  MNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPPPLPTTPRPHVTNMSSDESEMESSE 140

Query: 61  EDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKK 120
           E+VEGKY+SSGVSKTA+ GNKRSRCE IVGPGIDKDVAHE VGVKPS LVPKEIPMI KK
Sbjct: 141 EEVEGKYHSSGVSKTAKLGNKRSRCETIVGPGIDKDVAHEAVGVKPSPLVPKEIPMI-KK 200

Query: 121 NPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILS 180
           NPVFQ KI PKV+HDGK     D INNE+EE EKE  DLK YATLEDLERGKLPPEEILS
Sbjct: 201 NPVFQIKIVPKVIHDGKD----DTINNELEEPEKEEPDLKPYATLEDLERGKLPPEEILS 260

Query: 181 LPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRG 240
           LPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGID+AKSALTVKLMQEGRMRG
Sbjct: 261 LPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDDAKSALTVKLMQEGRMRG 320

Query: 241 QAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG 282
           QAFVT PS+ELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG
Sbjct: 321 QAFVTFPSIELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG 357

[Close]

BLAST of Carg23330 vs. ExPASy TrEMBL
Match: A0A1S3BJY8 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490451 PE=4 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 2.6e-126
Identity = 247/282 (87.59%), Postives = 255/282 (90.43%), Query Frame = 0


Query: 1   MNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPATPRPQITNVSSDESEMESSE 60
           MNKMNIPAPFRLPLPTPPLPPS PAPPS SLTLPPLPPPAT R Q+TN+ SDESEMESSE
Sbjct: 81  MNKMNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSE 140

Query: 61  EDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKK 120
           EDVEGKYNSSGVSKTA+SG KR RCE IVGPGIDKDVAHE VGVKPSTLVPKEIPMIKKK
Sbjct: 141 EDVEGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK 200

Query: 121 NPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILS 180
           NPV Q +IAPKV+HDGK     D  NN+ E  EKEA DLK YATLEDLERGKLPPEEILS
Sbjct: 201 NPVIQIRIAPKVIHDGKV----DKTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILS 260

Query: 181 LPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRG 240
           LPMFKNYTAGSPTSVLYIKNLAKDV+NDDLYYIFGSLF GIDEAKSALTVKLMQEGRMRG
Sbjct: 261 LPMFKNYTAGSPTSVLYIKNLAKDVLNDDLYYIFGSLFEGIDEAKSALTVKLMQEGRMRG 320

Query: 241 QAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKG 282
           QAFVT PS+ELAQ ALNLVNGYVFKGKPMIIQFGRNPGA KG
Sbjct: 321 QAFVTFPSIELAQLALNLVNGYVFKGKPMIIQFGRNPGAVKG 358

[Close]

BLAST of Carg23330 vs. ExPASy TrEMBL
Match: A0A0A0KCT1 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G118290 PE=4 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 9.1e-111
Identity = 220/256 (85.94%), Postives = 231/256 (90.23%), Query Frame = 0


Query: 1   MNKMNIPAPFRLPLPTPPLPPSVPAPPS-SLTLPPLPPPATPRPQITNVSSDESEMESSE 60
           MNKMNIPAPFRLPLPTPPLPPS+PAPPS SLTLPPLPPP T R Q+TN+ SDESEMESSE
Sbjct: 81  MNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPVTTRSQVTNMPSDESEMESSE 140

Query: 61  EDVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKK 120
           EDVEGKYN SGVSKTA+SG KR RCE IVGPGIDKDVAHE VGVKPSTLVPKEIPMIKKK
Sbjct: 141 EDVEGKYNPSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK 200

Query: 121 NPVFQFKIAPKVVHDGKQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILS 180
           NPV Q +IAPKV+HDGK      +INN+ EE EKEA DLK YATLEDLERGKLPPEEILS
Sbjct: 201 NPVIQIRIAPKVIHDGKV----GNINNDGEEAEKEADDLKPYATLEDLERGKLPPEEILS 260

Query: 181 LPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRG 240
           LPMFKNYTAG+PTSVLYIKNLAKDV+NDDLYYIFGSLF GIDEAKSALTVKLMQEGRMRG
Sbjct: 261 LPMFKNYTAGTPTSVLYIKNLAKDVLNDDLYYIFGSLFEGIDEAKSALTVKLMQEGRMRG 320

Query: 241 QAFVTLPSVELAQHAL 256
           QAFVT PS+ELAQ AL
Sbjct: 321 QAFVTFPSIELAQRAL 332

[Close]

BLAST of Carg23330 vs. TAIR 10
Match: AT1G09230.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 282.0 bits (720), Expect = 5.5e-76
Identity = 162/281 (57.65%), Postives = 199/281 (70.82%), Query Frame = 0


Query: 1   MNKMNIPAPFRLPLPTPPLPPSVPAPPSSLTLPPLPPPATPRPQITNVSSDESEMESSEE 60
           MNKMN+P PFRL LPTPPLP + P                 +  + + SS ESEMES E+
Sbjct: 189 MNKMNLPPPFRLALPTPPLPKAGP----------------QQTDLEHQSSSESEMESDED 248

Query: 61  DVEGKYNSSGVSKTARSGNKRSRCEAIVGPGIDKDVAHETVGVKPSTLVPKEIPMIKKKN 120
                        T++SG KR+R   +VG G+DKDV HETVGVKPS+L PKEIP I+K  
Sbjct: 249 -----------IGTSKSGRKRARHGFLVGLGMDKDVPHETVGVKPSSLTPKEIPRIRKNK 308

Query: 121 PVFQFKIAPKVVHDG-KQEGKGDDINNEVEETEKEAADLKSYATLEDLERGKLPPEEILS 180
            V Q KI  KV  D  K+E + +D     +E +++ ++LK +A+LE+LE+G+LPP++ILS
Sbjct: 309 HVMQIKITSKVTQDEYKEESENED---PADEPKEKDSNLKPFASLEELEKGRLPPQDILS 368

Query: 181 LPMFKNYTAGSPTSVLYIKNLAKDVVNDDLYYIFGSLFGGIDEAKSALTVKLMQEGRMRG 240
           LPMFKNYTAG+P+ VLYIKNLAKDVV DD YYIFGS F   + AKS+L V+LMQEGRMRG
Sbjct: 369 LPMFKNYTAGNPSVVLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGVRLMQEGRMRG 428

Query: 241 QAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK 281
           QAF+T PSVE+A  ALNLVNG+VFKGKPMIIQFGR PGAAK
Sbjct: 429 QAFLTFPSVEVAHRALNLVNGFVFKGKPMIIQFGRTPGAAK 439

[Close]

BLAST of Carg23330 vs. TAIR 10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B )

HSP 1 Score: 45.8 bits (107), Expect = 6.6e-05
Identity = 28/87 (32.18%), Postives = 45/87 (51.72%), Query Frame = 0


Query: 191 PTSVLYIKNLAKDVVNDDL---YYIFGSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPS 250
           P   +YI+NL + +  ++L    Y   S FG I      L V  ++  ++RGQA+VT   
Sbjct: 8   PNQSIYIQNLNERIKKEELKRSLYCLFSQFGRI------LDVVALKTPKLRGQAWVTFSE 67

Query: 251 VELAQHALNLVNGYVFKGKPMIIQFGR 275
           V  A HA+  +  + F  KPM +Q+ +
Sbjct: 68  VTAAGHAVRQMQNFPFYDKPMRLQYAK 88

The following BLAST results are available for this feature:

BLAST of Carg23330 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029165.1	5.8e-152	100.00	U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita argyrosperma s...	[more]
KAG6597718.1	4.9e-151	99.65	U11/U12 small nuclear ribonucleoprotein 65 kDa protein, partial [Cucurbita argyr...	[more]
XP_022932769.1	3.0e-148	98.25	U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita moschata] >XP_...	[more]
XP_022972081.1	4.3e-147	98.93	U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita maxima] >XP_02...	[more]
XP_023540623.1	9.5e-147	98.93	U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita pepo subsp. pe...	[more]

BLAST of Carg23330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWV8	7.8e-75	57.65	U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana O...	[more]
F1Q8J0	3.8e-21	33.02	RNA-binding region-containing protein 3 OS=Danio rerio OX=7955 GN=rnpc3 PE=2 SV=...	[more]
Q5R6C7	6.4e-21	30.30	RNA-binding region-containing protein 3 OS=Pongo abelii OX=9601 GN=RNPC3 PE=2 SV...	[more]
Q96LT9	1.1e-20	30.00	RNA-binding region-containing protein 3 OS=Homo sapiens OX=9606 GN=RNPC3 PE=1 SV...	[more]
Q4G055	1.9e-20	30.58	RNA-binding region-containing protein 3 OS=Rattus norvegicus OX=10116 GN=Rnpc3 P...	[more]

BLAST of Carg23330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EXB4	1.4e-148	98.25	U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Cucurbita moschata OX=...	[more]
A0A6J1I4Z6	2.1e-147	98.93	U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Cucurbita maxima OX=36...	[more]
A0A6J1DFW4	2.2e-128	88.30	U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 OS=Momordica c...	[more]
A0A1S3BJY8	2.6e-126	87.59	U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X2 OS=Cucumis mel...	[more]
A0A0A0KCT1	9.1e-111	85.94	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G118290 PE=4 SV...	[more]

BLAST of Carg23330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09230.1	5.5e-76	57.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G30260.1	6.6e-05	32.18	U2 small nuclear ribonucleoprotein B	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 194..271 e-value: 4.9E-11 score: 52.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 195..267 e-value: 6.3E-11 score: 41.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 193..275 score: 14.538761
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 187..282 e-value: 6.9E-19 score: 69.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..43
None	No IPR available	PANTHER	PTHR16105	UNCHARACTERIZED	coord: 1..280
None	No IPR available	PANTHER	PTHR16105:SF0	RNA-BINDING REGION-CONTAINING PROTEIN 3	coord: 1..280
None	No IPR available	CDD	cd12239	RRM2_RBM40_like	coord: 192..273 e-value: 3.68102E-41 score: 135.384
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 173..278

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23330-RA	Carg23330-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex
molecular_function	GO:0097157	pre-mRNA intronic binding
molecular_function	GO:0030626	U12 snRNA binding
molecular_function	GO:0003676	nucleic acid binding