Carg23314 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23314
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr06: 10562203 .. 10565805 (+)
RNA-Seq Expression	Carg23314
Synteny	Carg23314

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGGGAGAGAGTTACCGTTTGTGGAATTTTTTGGCTGAAGCGGAATCGATTTTTAGGTACTTCGTTTTCTTTTACCGTTTTTTTGATGTGAATCGATGACATTTGGAAAAGAAGTTGCGAAATCTGAATTGAAGCTTGGATCATCTGGTTGTTTTTTTTTTTTTTTTTTTTTTTTAATTTGATTTGTTGTATTCGTTTTGAAAGCTGTTGTTTACCTTCTTGTTTCTGATTTGAGTTTTGTTGTTTGTGATTTTGTATGATTTGTTCGTTTTTGGTTTAATTTTGACTTCATTTTGTTGTTTATGGTTTATTGATTTACGTTATTATTATTTTTTTTCTTTGTATTTCATCTTGCAGAGGATTGGTTTTATTGTTGTTATGGCAATTGTAAGTATGGAGTTGTGAACTTGGGAGCTTCTCAGGAACTGGAACTTGAAAAATCTATAGCGGTACAAGGGGTTGGGTTTTGGTGAATTTCTTAAGGGGACCTGCGGCTAGATTTTGGATATTGAATACATTTCTTCAAGCCTTTTCTTAGAATTCGTGGCTAATCGAAATTGGTTGTGGTTTTGGGATGCTGAATTACGACATTTGGATTCTTGATTGGTAGCAAATGAAGATGGAGTTTGTGCAATTGCCTAGTTGATTTGTTGGCAATTGAAGAGGTAGCTTTAAGGGAAATTTATTGAAAATATATGGCAACGTCGAGTGAGAGATGGATCGATAGACTTCAATTGTCCTCCTTGTTTTGGCCTCCCCCAGATGATGATCAGCAAAGAAAGGTACTGAGGCTTTTATGTTTTATATATGATCGATTTTTGGGATGGTACTTTCTCTCATTATATGACATTGTTTTCTAATATAGTTCAAGTTGATTAGTCTGTTTTTATAGCTCGTCAGTAAGCCCGAAGTTGTGTTTATCATTCTTCATAAAGTTGCTGGGTCCCTGTTCTTGAATAATGTTCCGTTGTTTTCCTTGATCTTTTCCTTGTTATGGTTTTCTAGGCACGATAATGTTTTATGATGCGTTTTAATTTTTTTAATTCCTTATTATGTGGACATTTACTCGAATAGCTCATAGAATTAGAATATGGTTCAAAGTTGCCAAATGGGCGTGGAACAGTGAACTGACACTCTATCTGCTTTTCTAATTGTAGCGGATTTTCCATTAGCTTTAGAGGTTCTTCTCCCTTTCGAAAAAAAAAAAAAAATGAAAGAAGAAGAGAAGCAAGCAATTCATCTGCTTTTAGTTAGCTACTGTCAAAACTAACTATGGCATACTAAAGGAATAAATATGTGGGAGCTTCTGCTGGAATTTCAATATAAGAAAATTTCGACAATGTGTGCTAATCTCAGAATTTCGATATGAGGGACTTAATTATGATTAATTTCCCTTTATGATTGTCTGCACATGCTTCTTACAGCTTATTATCTTCTTTGCTGGAAATGGTTACATTTATTTAAAGAGTAGATTGGTACTTGGCTACCTTCTTACTATTCACGTGTACTAGATAGACCCTACAGGTGAAGATAGTATTTTTCATAAAGGAAATGGTAGCAATGAGAACAAATGAAATACTTTATAAGGTGGTCTTTTGTTATGAAGTTGATGCTATTAGTCTCTCAATGGTAAAAGTTTGGGTACGACGCAAGAGTACAGATATTTAGGTATGATGCAAATGTGAAGTGGGTGGAATTTTGTGAGAGTTTATGTATCGGCTCTACTTTTTTTTTTTAAAAAAATATAAGACCACTACTACATGCATGTCATGACTACTGTATGTAAAAAAATCTGTTTCAATAATTCGCTTTAAACATTGTCGTGGACTTCAATGTTTATAAATATTTCAAATTTAATAATAAAATAACATAGTTAAAAAAGTAAAAAAAACATCTCTTATCACAAATTAGAAATAAATGTCATTGACTTATCCTAACATACTGACTATAGCTTAATGTGGAAATCTAACTATCGGGACTTGATTCATGGCTTCCTCGGCTGATGCCATCATCCATACGGGGGGTCTTTACCTTTACCTGGAAAAATGTTAAACATGGTTTGAGTATTTAAAAGTACTCAATAAGTGACCCCGTTGTTGGTGTCAGAAAATGCAATCACATGCAAACATGGTTCGTGCTTGCCTCTCTTGTGCTCACTCCTCTGGGAGCACTTCCACGAGCATTGCTCGCCTCTCTCATTCTCACTCCTCTTGGAGATCTTTCATGGGTGTTGCTCACTACTCTTGTGCTCACTCCTAGGAAGTGGCGTTCCTCGCCTCCCTTGGATGCAACATAATTAATTACACTTGTCCCTATCTGCACACCTAGTAGCATGTATGGTTTAAGATCAATTGTTTCCTTGAATCTGATGTGGCCATCCAATTTACTATAATGACCCGAACATTAGGACTGAACCTCTTTATATGAATTGTCAAGATAGGAGGGGCCCTGTGAATGAGAAACCTCTTTGTTGCATCTCTTTTCACATTCACAATTGTTGAATCAGAATTCATCTCACAATCCTCACCTCTCTGATTGGTTCTCGGCAGATATTTGTGAACTCAAGGGCTCAATATTAGTTTTTGCAAGTTCACTGCTTTCAGGATCATCGTTGGAAAGATAACACCTGGATTTATCTTGATTGCTGGTGTTATTACAACCTGAAGAACATGCTAGGCCAGGATTCATTATTTTTAGAATCCTGAGTAGTGGAAATATCACCATTTTTGGCTGTCAGTTCTGGTCCAAGGAACGTCAAATTAACTGAAGCACATTTTCCTCCCTTCTCAATCAAAACTTCTTTTTCAGGCTCTTTAACATATGAGGCATTCAGAGAACTTAAAGTCTTCTCCATAATGGTAGTTGTGCTACTGGTGCTGGCCTCTGATGCAAGGGAAAACTCATTATTAGATGATGGAAGAGGCAAATTGAACTGGTACAACATCTGATGTCTTGTCAGTTTTAGGAATCGTCTTTCCACTACTCTTAGGTGGCACTTTTATCTTCTTTGCCTGAGAGACTAGTTGGACCTTTTTGGCCAGAGGTTTCTTCATTGGAACGGGAAGAGAAAGATCAAGAAATGGTTCATAAACCATCGTTGTGTGGCCACATTCTTTGTAACATACAGCACTTGATATTTCCCCCCAAACATCTCATCAACAAATGGAGTGGGATTTCCAGACATTCTCTCATCCTTAGACTTCGTCATCTTCCTTGAAGTCAGCTCTTCAATGGACAATTCATCAAGCAGGGCACGAAGCAATTCATGACTGTCATGCTGCTCATATCTTTTGAACTGAGGGGCTTTGGAAGAGATGCAGCCAAAAACTGATCTTGGATTTATTGAGCCTTTCATTCTGCCTTCCGTTCTTGCTTCTTTAAAGATCTTCTTTATGGCTATAGTTAGAGGTCCAACCCATTCTTCCAATTTCATAAAATGATCACTCAACATATCAGTGTCCAAGAGATTTTGACGGATTGAATGGAAAACCTAGATTAATCAATCCTTTTACAACATAATGATTTCTTCCATCCAGGTATTGGAGTCCAGCTTTGGAGATCTTAGTTTTGTCGCCTCATTTTCTTCCTTCGACGCCCTTTGA

mRNA sequence

AGAGGGAGAGAGTTACCGTTTGTGGAATTTTTTGGCTGAAGCGGAATCGATTTTTAGGTACTTCGTTTTCTTTTACCGTTTTTTTGATGTGAATCGATGACATTTGGAAAAGAAGTTGCGAAATCTGAATTGAAGCTTGGATCATCTGAGGATTGGTTTTATTGTTGTTATGGCAATTGTAAGTATGGAGTTGTGAACTTGGGAGCTTCTCAGGAACTGGAACTTGAAAAATCTATAGCGGTATTGGAGTCCAGCTTTGGAGATCTTAGTTTTGTCGCCTCATTTTCTTCCTTCGACGCCCTTTGA

Coding sequence (CDS)

ATGACATTTGGAAAAGAAGTTGCGAAATCTGAATTGAAGCTTGGATCATCTGAGGATTGGTTTTATTGTTGTTATGGCAATTGTAAGTATGGAGTTGTGAACTTGGGAGCTTCTCAGGAACTGGAACTTGAAAAATCTATAGCGGTATTGGAGTCCAGCTTTGGAGATCTTAGTTTTGTCGCCTCATTTTCTTCCTTCGACGCCCTTTGA

Protein sequence

MTFGKEVAKSELKLGSSEDWFYCCYGNCKYGVVNLGASQELELEKSIAVLESSFGDLSFVASFSSFDAL

Homology

[Close]

BLAST of Carg23314 vs. NCBI nr
Match: KAG7029181.1 (hypothetical protein SDJN02_10366 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.7 bits (356), Expect = 2.3e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MTFGKEVAKSELKLGSSEDWFYCCYGNCKYGVVNLGASQELELEKSIAVLESSFGDLSFV 60
          MTFGKEVAKSELKLGSSEDWFYCCYGNCKYGVVNLGASQELELEKSIAVLESSFGDLSFV
Sbjct: 1  MTFGKEVAKSELKLGSSEDWFYCCYGNCKYGVVNLGASQELELEKSIAVLESSFGDLSFV 60

Query: 61 ASFSSFDAL 70
          ASFSSFDAL
Sbjct: 61 ASFSSFDAL 69

[Close]

BLAST of Carg23314 vs. NCBI nr
Match: KAG6592206.1 (hypothetical protein SDJN03_14552, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.1 bits (170), Expect = 8.5e-09
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 18 EDWFYCCYGNCKYGVVNLGASQELELEKSIA 49
          EDWFYCCY NCKYGVVNLGASQELELEKSIA
Sbjct: 16 EDWFYCCYENCKYGVVNLGASQELELEKSIA 46

The following BLAST results are available for this feature:

BLAST of Carg23314 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029181.1	2.3e-30	100.00	hypothetical protein SDJN02_10366 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6592206.1	8.5e-09	96.77	hypothetical protein SDJN03_14552, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg23314 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg23314 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg23314 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23314-RA	Carg23314-RA	mRNA