![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Carg23288 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GCGAACTGTAATTTGCTTCGAACGAGTCCAGAAAATGGCGCAAAGGACGAAGAATATGAACATTTGGTACTTATTCATGATGCTAAATTTCAATCTGCTGCTTCCTTTTTCATCTGGTAAACTTCATTTCTTGATCTGCTTTCTTCCTCGATTTCTTTATTTGATTGTTCTGCAACGTAGTTTCCATATGAGGCTTGTGTTCATGTTAGATTTATTAAAAATGGTTCATGATTGTGTTGAATTGAAATATATTTGAGTGTAATTGTCATTATTGTGCCTGATTTCCCGGATATTGCAGCTGCGGTTTGGTTCTGCGAATTGGGATATAATCTTACGAGATTGTTTGGATATTTGGAAAATTATTAGTGTTTTGATCCTTCCGATTTTAATTTTCTACTTGAGAAATTTGATGATGTGTCTTTCAATTTATCTAGTCTTTTGTTTCTTATCAAAGTATTACTCACTGAGCAAAGGATTTATTTTTTCTAACACAAAAAATTATTGTGATCACTAGATTCAACATCATATTGAATTAGTTTCTTATCAATCTGTAGGTTGTTCAAGTTTGGATCAACTTCAGTTATATATCTGTCTCATATCCAATTTGGATCACTAGATTCATCATCATATTGAATTAGTTCCTTGCTTATTTGTGATTGTTTTACATGGAAGGCAGAAATGGCTATGCCGTATTTTTCTTTTTCTACTAGTCATAGTATGGATATTGAGAGGAAGACCATTTTACCTCTTCTTTATTTCTTGAGTTTTATGATGCAAATTAAGCTTCGTTTTACAAAACTGTGTTTTTCTTGTAGGAGAATCAAATGATGTCTGCGTTTCAAAAGGTGGTCGTTTCACACCCTTCGCAATGGAAGGAAAACCTCCAAAAAAGGTTAGCAAAGCACAAGATTTGACGCTTTGTCGAGTCTTCAGAAAGAAGACTTGCTGTGGTGTAGCTCAAACGTACCCAGCTTTGCTTTCTGTTAGGAGGCTGGCTTCAACAGGGGAAGGCAACCAAGAATGCTTGCAATTGTGGGAACTTCTGGAGTGCTCGATTTGTGATCCACTAGTTGGCATTCAACCCGGACCTCCTCTGATATGTCCCTCTTTCTGCGACAGAGTCTTCAACGCTTGCTCTGATGCTTACTTTTCTGTTGATGCTAAAACACAGGTGAGCAGACGACAGATATTGTCATCTTTGGGTTTTTCCTTCTAGACTTCCCCTCAAGGTCTTAAAACACGTATGCTAGGGAGAGGTTCCACATTCTTAAAAAGAATATTTCGTTCCCCTCTCCAACCGACGTGGGATTTCACAATCCACCCCTTTGGGGGCCAGCGTCCTCGTTGGAATTCGTTCCTTTCTCCAATCGATGTGGGGTCTCCCAGACCTAGATGTTCTTTGGTTAACCATATAAGGTTTCAAAAAACTGATAGTCATAGAGGTACATATGAGGTTTCCAAAAGTTGATTGTCTTAGAGGCACATAGGTCATGGCACTCATTTTAGAAGGAAAAAGAAAATGACATCTAATTGCTGGTAAAACTTTAGTTTAGTTATAAATTTAGTCTGTAATTAGTCCTTAAACTATACATTAATGCTTCTATTTAGATTATACCATCGTTGTGTTCAGTTGTCTAGCACATCATTCCAGCTCAGGTGAAGTTTATCAAATGGGCATGTTACGTTGAGGACTAAATTTATAATTTAACGTAACTTTTATAGTTATTTTCATACTATAAAATCGTTGGAACTTTGTTTAATTTTGTTGGTTTGTTATTTCCATCTTTCTACATGCACGATGTTCTCTTAACCAACGTAATGAGAAGTAAAAGCACGAACTCGAACCTTGCCCACAATGTAAGACTAAATATACTTCCTGATTAGATTTTATGGTTCAGGTTCTAGCACCGTGCGGAGTGAATGACTTTGTGTGTGGCAGGGCTTCTGAATGGGTTTCGAATGGGACGCAGCTTTGCAGTGCTGCAGGTTTTTCAGTTAAGATTCCGAACGACGAAAGCTCTTGCTATGGTAGTAAAGCCAGACTAAACTCCGTTGCTAATTCGTGGAAGTCTTCACCATCTGTAGTGGTTTCTCAAAGAACAGGGCACTTGGGTGTTTTAGAGGACTTCCAGCAATGGGTGAAAGAAATGAGTTTACGTGAACAGGTTTCTTGGCTGATCAGTTCCATGGTGCTTTCAGCTGGGCTTCTCCTTGTAAGGTTGAGGAAGCTAACCATTTTCATTACTTGGTCTTTTATTTTCCCTGGCTTGCACTAA GCGAACTGTAATTTGCTTCGAACGAGTCCAGAAAATGGCGCAAAGGACGAAGAATATGAACATTTGGTACTTATTCATGATGCTAAATTTCAATCTGCTGCTTCCTTTTTCATCTGGAGAATCAAATGATGTCTGCGTTTCAAAAGGTGGTCGTTTCACACCCTTCGCAATGGAAGGAAAACCTCCAAAAAAGGTTAGCAAAGCACAAGATTTGACGCTTTGTCGAGTCTTCAGAAAGAAGACTTGCTGTGGTGTAGCTCAAACGTACCCAGCTTTGCTTTCTGTTAGGAGGCTGGCTTCAACAGGGGAAGGCAACCAAGAATGCTTGCAATTGTGGGAACTTCTGGAGTGCTCGATTTGTGATCCACTAGTTGGCATTCAACCCGGACCTCCTCTGATATGTCCCTCTTTCTGCGACAGAGTTCTAGCACCGTGCGGAGTGAATGACTTTGTGTGTGGCAGGGCTTCTGAATGGGTTTCGAATGGGACGCAGCTTTGCAGTGCTGCAGGTTTTTCAGTTAAGATTCCGAACGACGAAAGCTCTTGCTATGGGCACTTGGGTGTTTTAGAGGACTTCCAGCAATGGGTGAAAGAAATGAGTTTACGTGAACAGGTTTCTTGGCTGATCAGTTCCATGGTGCTTTCAGCTGGGCTTCTCCTTGTAAGGTTGAGGAAGCTAACCATTTTCATTACTTGGTCTTTTATTTTCCCTGGCTTGCACTAA ATGGCGCAAAGGACGAAGAATATGAACATTTGGTACTTATTCATGATGCTAAATTTCAATCTGCTGCTTCCTTTTTCATCTGGAGAATCAAATGATGTCTGCGTTTCAAAAGGTGGTCGTTTCACACCCTTCGCAATGGAAGGAAAACCTCCAAAAAAGGTTAGCAAAGCACAAGATTTGACGCTTTGTCGAGTCTTCAGAAAGAAGACTTGCTGTGGTGTAGCTCAAACGTACCCAGCTTTGCTTTCTGTTAGGAGGCTGGCTTCAACAGGGGAAGGCAACCAAGAATGCTTGCAATTGTGGGAACTTCTGGAGTGCTCGATTTGTGATCCACTAGTTGGCATTCAACCCGGACCTCCTCTGATATGTCCCTCTTTCTGCGACAGAGTTCTAGCACCGTGCGGAGTGAATGACTTTGTGTGTGGCAGGGCTTCTGAATGGGTTTCGAATGGGACGCAGCTTTGCAGTGCTGCAGGTTTTTCAGTTAAGATTCCGAACGACGAAAGCTCTTGCTATGGGCACTTGGGTGTTTTAGAGGACTTCCAGCAATGGGTGAAAGAAATGAGTTTACGTGAACAGGTTTCTTGGCTGATCAGTTCCATGGTGCTTTCAGCTGGGCTTCTCCTTGTAAGGTTGAGGAAGCTAACCATTTTCATTACTTGGTCTTTTATTTTCCCTGGCTTGCACTAA MAQRTKNMNIWYLFMMLNFNLLLPFSSGESNDVCVSKGGRFTPFAMEGKPPKKVSKAQDLTLCRVFRKKTCCGVAQTYPALLSVRRLASTGEGNQECLQLWELLECSICDPLVGIQPGPPLICPSFCDRVLAPCGVNDFVCGRASEWVSNGTQLCSAAGFSVKIPNDESSCYGHLGVLEDFQQWVKEMSLREQVSWLISSMVLSAGLLLVRLRKLTIFITWSFIFPGLH Homology
BLAST of Carg23288 vs. NCBI nr
Match: KAG7021079.1 (hypothetical protein SDJN02_17767 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 478.0 bits (1229), Expect = 4.5e-131 Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0
BLAST of Carg23288 vs. NCBI nr
Match: XP_022937539.1 (uncharacterized protein LOC111443915 [Cucurbita moschata]) HSP 1 Score: 417.5 bits (1072), Expect = 7.2e-113 Identity = 212/256 (82.81%), Postives = 212/256 (82.81%), Query Frame = 0
BLAST of Carg23288 vs. NCBI nr
Match: KAG6586243.1 (Dormancy-associated protein-like 3, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 412.9 bits (1060), Expect = 1.8e-111 Identity = 209/251 (83.27%), Postives = 209/251 (83.27%), Query Frame = 0
BLAST of Carg23288 vs. NCBI nr
Match: XP_023537571.1 (uncharacterized protein LOC111798565 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 411.4 bits (1056), Expect = 5.2e-111 Identity = 208/256 (81.25%), Postives = 209/256 (81.64%), Query Frame = 0
BLAST of Carg23288 vs. NCBI nr
Match: XP_022965856.1 (uncharacterized protein LOC111465618 isoform X1 [Cucurbita maxima] >XP_022965857.1 uncharacterized protein LOC111465618 isoform X1 [Cucurbita maxima] >XP_022965858.1 uncharacterized protein LOC111465618 isoform X1 [Cucurbita maxima]) HSP 1 Score: 409.5 bits (1051), Expect = 2.0e-110 Identity = 207/256 (80.86%), Postives = 208/256 (81.25%), Query Frame = 0
BLAST of Carg23288 vs. ExPASy TrEMBL
Match: A0A6J1FBG7 (uncharacterized protein LOC111443915 OS=Cucurbita moschata OX=3662 GN=LOC111443915 PE=4 SV=1) HSP 1 Score: 417.5 bits (1072), Expect = 3.5e-113 Identity = 212/256 (82.81%), Postives = 212/256 (82.81%), Query Frame = 0
BLAST of Carg23288 vs. ExPASy TrEMBL
Match: A0A6J1HQ69 (uncharacterized protein LOC111465618 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465618 PE=4 SV=1) HSP 1 Score: 409.5 bits (1051), Expect = 9.5e-111 Identity = 207/256 (80.86%), Postives = 208/256 (81.25%), Query Frame = 0
BLAST of Carg23288 vs. ExPASy TrEMBL
Match: A0A0A0LIV4 (Folate_rec domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G031180 PE=4 SV=1) HSP 1 Score: 365.5 bits (937), Expect = 1.6e-97 Identity = 179/256 (69.92%), Postives = 197/256 (76.95%), Query Frame = 0
BLAST of Carg23288 vs. ExPASy TrEMBL
Match: A0A6J1DAH8 (uncharacterized protein LOC111018882 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018882 PE=4 SV=1) HSP 1 Score: 363.2 bits (931), Expect = 7.8e-97 Identity = 181/256 (70.70%), Postives = 199/256 (77.73%), Query Frame = 0
BLAST of Carg23288 vs. ExPASy TrEMBL
Match: A0A6J1DB86 (uncharacterized protein LOC111018882 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018882 PE=4 SV=1) HSP 1 Score: 362.1 bits (928), Expect = 1.7e-96 Identity = 180/253 (71.15%), Postives = 198/253 (78.26%), Query Frame = 0
BLAST of Carg23288 vs. TAIR 10
Match: AT5G27830.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate receptor, conserved region (InterPro:IPR018143); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 205.7 bits (522), Expect = 4.0e-53 Identity = 116/246 (47.15%), Postives = 148/246 (60.16%), Query Frame = 0
BLAST of Carg23288 vs. TAIR 10
Match: AT5G27830.5 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate receptor, conserved region (InterPro:IPR018143). ) HSP 1 Score: 205.7 bits (522), Expect = 4.0e-53 Identity = 116/246 (47.15%), Postives = 148/246 (60.16%), Query Frame = 0
BLAST of Carg23288 vs. TAIR 10
Match: AT5G27830.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate receptor, conserved region (InterPro:IPR018143); Has 79 Blast hits to 79 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). ) HSP 1 Score: 201.8 bits (512), Expect = 5.8e-52 Identity = 110/225 (48.89%), Postives = 138/225 (61.33%), Query Frame = 0
BLAST of Carg23288 vs. TAIR 10
Match: AT5G27830.4 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate receptor, conserved region (InterPro:IPR018143). ) HSP 1 Score: 201.8 bits (512), Expect = 5.8e-52 Identity = 110/225 (48.89%), Postives = 138/225 (61.33%), Query Frame = 0
BLAST of Carg23288 vs. TAIR 10
Match: AT5G27830.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate receptor, conserved region (InterPro:IPR018143); Has 58 Blast hits to 58 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). ) HSP 1 Score: 156.0 bits (393), Expect = 3.7e-38 Identity = 98/245 (40.00%), Postives = 126/245 (51.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|