Carg23241 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23241
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	novel plant SNARE 11-like
Location	Carg_Chr16: 8900913 .. 8902874 (-)
RNA-Seq Expression	Carg23241
Synteny	Carg23241

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAATCAACAATTGGTTGATAGGGGAAACAAAATGATGGATGAGACTGATGAAGCAATTGAGAGGTCTAAAAAGGTTAGTTTGTCATTGAAAGATCAAATTTCTGCTTTCTTTCTATCGGTTGGGGAGGAAAATGAATTATTCTTCATAAGGGTGAGGAAACCTCTCCCTAGTAGACACGTTTTAAAAACCTTGAGAAACCTTGAGGGGAAGTCTGAGAGAGAGCCCAAAGAAGATAATATCTGCTAGCGGTGGGCTTGAGTTATTACAAATGTTATAAGAATCAGTCACTGGGTGGTGTTCCAGCAAAGACGTTGGGCCCTGAAGGAGGGTGGATTGTGAGATCCCACATCAAGAGAGGAGCAAGTGCCTGTGAGGACGCACTGTGAGATCCCACATCAAGAGAGGAGCGAGTGCCTGTGAGGATGCATTGTGAGATCCCAATCGATTGGAAAGGGGAATGAGTGTCAGCGAGGACGCAGGGCCTTGAAGAGGGGTGAATTGTGAGATCCCACATCGGTTGAGGAGGAGAACGAAACATTCTTTATAAGGATGTGGAAACCTCTCCCTAGGAGACGCGTTTTAATTACTTCGAGGGAAAGCCCGAAAGAGAGCCAAAAGAGGGCAATATCTACTAGCAGTGGGCTTGAGCTGTTACAAATGATATTAGAGCTAGTCATCGAGCGGTGTGTCAGCGAGGGCGCTGGGCACCGAAGGGGGATAGATTGTGAGATTCCACATCGATTGGAGAGGGGAACGAGTGCCAGCAAGGACGCTGGTCCCGAAGGGGGTAGGTTGTGAGATCCCACATCGATTGGAGAGGGAAACGAGTGCCAGCGAGGACACTGGGCCCTGAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGGGGAAGAGAACGAAGCAGAGTGTGGAAACCTCTCCCTAGCATTCACATTTTAAAAACCTTGAGGGAAAGCTTGTGAGAAAAATCCCAATGAGGACAATATCTGCTAACAGTGGACTTGAGATGTTACGTAGACTGATATGTGATATGTGGTAGTTATTGTATGAATGTGATAGGTAGTTCAAGAGACGGTGAACGTAGGAACAGAGACAGCAGCAGCTCTGAAGGCGCAGACGGAGCAAATGAGCAGGATAGTGAACGAGCTCGACTCAATACATTTCTCACTTAAGAAAGCCTCAAAACTGGTGAAAGAATTAGGGAGACAAATTGCAACTGATAAGTGTATAATGGCCCTCCTCTTCATTATTGTCCTTGGTGTCATTGCCATCATCATAGTCAAGGTACCTACCATTCTTCATTCATCCATTCTTTCTTTCTTTCTGTATTTAGCTGAACAATTCTGGTTCTATACTCCTCAGCTGGTGAATCCAAATAACAAGGACATTCAGGACATCCCGGGGCTGGCACCGCCCGCCCAGAGCCGAAAACTGCTATGGAATTCCGGTTAAAACCCCGAGTTACAAAGAAGAATCATCGTCCATATCCCGAAACGTACTCGATCTTCTGGGAATGCTGTGCACAATTAGGTAGCTACGTGAATTTGTTCTAGCCTTTTGTAGCTTGTGAGATAATAAGCTGTAGGGGCTGAATGAATGAAGGAAGGATAGGCAAAGCAGCATGGGGGGGACAGCCAAGCCAGGTTCTTTCCTATGCCTACAACTGACATTCATTCTCACTGTCTCTTGTCCTGTTCTGTCCTGTTCTTGAGATTTTATTGATTTTTATGTTTGGTTTTGTCTGTATAAATCTTAATCACTCATATATTCTATCATTTTACATTCATGTTTGGGGATTCATAATTATTATTTATGTTATTGTCACACTGATAATGTATATTAGATAATTCTCGGGCACATTGAAAATGACCTATCGGGTTCTGTTAGTTCATAGACACAAAAAATGACCGATCGATTTTTGTTAGTTCATAGAGACACCAAAAATGACTTATCAGT

mRNA sequence

ATGACAAATCAACAATTGGTTGATAGGGGAAACAAAATGATGGATGAGACTGATGAAGCAATTGAGAGGTCTAAAAAGGTAGTTCAAGAGACGGTGAACGTAGGAACAGAGACAGCAGCAGCTCTGAAGGCGCAGACGGAGCAAATGAGCAGGATAGTGAACGAGCTCGACTCAATACATTTCTCACTTAAGAAAGCCTCAAAACTGGTGAAAGAATTAGGGAGACAAATTGCAACTGATAAGTGTATAATGGCCCTCCTCTTCATTATTGTCCTTGGTGTCATTGCCATCATCATAGTCAAGCTGGTGAATCCAAATAACAAGGACATTCAGGACATCCCGGGGCTGGCACCGCCCGCCCAGAGCCGAAAACTGCTATGGAATTCCGGTTAAAACCCCGAGTTACAAAGAAGAATCATCGTCCATATCCCGAAACGTACTCGATCTTCTGGGAATGCTGTGCACAATTAGGTAGCTACGTGAATTTGTTCTAGCCTTTTGTAGCTTGTGAGATAATAAGCTGTAGGGGCTGAATGAATGAAGGAAGGATAGGCAAAGCAGCATGGGGGGGACAGCCAAGCCAGGTTCTTTCCTATGCCTACAACTGACATTCATTCTCACTGTCTCTTGTCCTGTTCTGTCCTGTTCTTGAGATTTTATTGATTTTTATGTTTGGTTTTGTCTGTATAAATCTTAATCACTCATATATTCTATCATTTTACATTCATGTTTGGGGATTCATAATTATTATTTATGTTATTGTCACACTGATAATGTATATTAGATAATTCTCGGGCACATTGAAAATGACCTATCGGGTTCTGTTAGTTCATAGACACAAAAAATGACCGATCGATTTTTGTTAGTTCATAGAGACACCAAAAATGACTTATCAGT

Coding sequence (CDS)

ATGACAAATCAACAATTGGTTGATAGGGGAAACAAAATGATGGATGAGACTGATGAAGCAATTGAGAGGTCTAAAAAGGTAGTTCAAGAGACGGTGAACGTAGGAACAGAGACAGCAGCAGCTCTGAAGGCGCAGACGGAGCAAATGAGCAGGATAGTGAACGAGCTCGACTCAATACATTTCTCACTTAAGAAAGCCTCAAAACTGGTGAAAGAATTAGGGAGACAAATTGCAACTGATAAGTGTATAATGGCCCTCCTCTTCATTATTGTCCTTGGTGTCATTGCCATCATCATAGTCAAGCTGGTGAATCCAAATAACAAGGACATTCAGGACATCCCGGGGCTGGCACCGCCCGCCCAGAGCCGAAAACTGCTATGGAATTCCGGTTAA

Protein sequence

MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIHFSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPAQSRKLLWNSG

Homology

[Close]

BLAST of Carg23241 vs. NCBI nr
Match: KAG7015688.1 (putative plant SNARE 11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 242.7 bits (618), Expect = 1.8e-60
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 60
           MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH
Sbjct: 1   MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 60

Query: 61  FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA 120
           FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA
Sbjct: 61  FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA 120

Query: 121 QSRKLLWNSG 131
           QSRKLLWNSG
Sbjct: 121 QSRKLLWNSG 130

[Close]

BLAST of Carg23241 vs. NCBI nr
Match: XP_023553230.1 (novel plant SNARE 11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 242.7 bits (618), Expect = 1.8e-60
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 60
           MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH
Sbjct: 132 MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 191

Query: 61  FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA 120
           FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA
Sbjct: 192 FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA 251

Query: 121 QSRKLLWNSG 131
           QSRKLLWNSG
Sbjct: 252 QSRKLLWNSG 261

[Close]

BLAST of Carg23241 vs. NCBI nr
Match: XP_022923361.1 (novel plant SNARE 11-like [Cucurbita moschata] >XP_022965148.1 novel plant SNARE 11-like [Cucurbita maxima] >KAG6577650.1 putative plant SNARE 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 242.7 bits (618), Expect = 1.8e-60
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 60
           MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH
Sbjct: 132 MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 191

Query: 61  FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA 120
           FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA
Sbjct: 192 FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA 251

Query: 121 QSRKLLWNSG 131
           QSRKLLWNSG
Sbjct: 252 QSRKLLWNSG 261

[Close]

BLAST of Carg23241 vs. NCBI nr
Match: KAA0041036.1 (putative plant SNARE 11 [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 2.9e-58
Identity = 124/130 (95.38%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 60
           MTNQQL+D GN+MMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH
Sbjct: 539 MTNQQLIDSGNRMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 598

Query: 61  FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA 120
           FSLKKASKLVKELGRQ+ATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDI+DIPGLAPP 
Sbjct: 599 FSLKKASKLVKELGRQVATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIRDIPGLAPPV 658

Query: 121 QSRKLLWNSG 131
           QSRKLLWNSG
Sbjct: 659 QSRKLLWNSG 668

[Close]

BLAST of Carg23241 vs. NCBI nr
Match: XP_008448761.1 (PREDICTED: novel plant SNARE 11 [Cucumis melo] >XP_008448762.1 PREDICTED: novel plant SNARE 11 [Cucumis melo] >TYK12073.1 putative plant SNARE 11 [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 2.9e-58
Identity = 124/130 (95.38%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 60
           MTNQQL+D GN+MMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH
Sbjct: 132 MTNQQLIDSGNRMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 191

Query: 61  FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA 120
           FSLKKASKLVKELGRQ+ATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDI+DIPGLAPP 
Sbjct: 192 FSLKKASKLVKELGRQVATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIRDIPGLAPPV 251

Query: 121 QSRKLLWNSG 131
           QSRKLLWNSG
Sbjct: 252 QSRKLLWNSG 261

[Close]

BLAST of Carg23241 vs. ExPASy Swiss-Prot
Match: Q944A9 (Novel plant SNARE 11 OS=Arabidopsis thaliana OX=3702 GN=NPSN11 PE=1 SV=2)

HSP 1 Score: 208.4 bits (529), Expect = 5.0e-53
Identity = 105/130 (80.77%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 60
           M+NQ+L+D+GN MMD+TD+AIER KK+VQET+NVGT+T+AALKAQTEQMSR+VNELDSIH
Sbjct: 134 MSNQELMDKGNSMMDDTDQAIERGKKIVQETINVGTDTSAALKAQTEQMSRVVNELDSIH 193

Query: 61  FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIP--GLAP 120
           FSLKKASKLVKE+GRQ+ATDKCIMA LF+IV+GVIAIIIVK+VNPNNKDI+DIP  GLAP
Sbjct: 194 FSLKKASKLVKEIGRQVATDKCIMAFLFLIVIGVIAIIIVKIVNPNNKDIRDIPGVGLAP 253

Query: 121 PAQSRKLLWN 129
           PA +R+LLWN
Sbjct: 254 PAMNRRLLWN 263

[Close]

BLAST of Carg23241 vs. ExPASy Swiss-Prot
Match: Q9LNH6 (Novel plant SNARE 12 OS=Arabidopsis thaliana OX=3702 GN=NPSN12 PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 3.1e-47
Identity = 97/127 (76.38%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 60
           M+NQ+LVD G K MDETD+AIERSK+VV +T+ VGT+TA+ LK QT+QM R+VN+LD+I 
Sbjct: 136 MSNQELVDAGMKRMDETDQAIERSKQVVHQTLEVGTQTASNLKGQTDQMGRVVNDLDTIQ 195

Query: 61  FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA 120
           FSLKKAS+LVKE+GRQ+ATDKCIMA LF+IV GVIAIIIVK+VNPNNKDI+DIPGLAPPA
Sbjct: 196 FSLKKASQLVKEIGRQVATDKCIMAFLFLIVCGVIAIIIVKIVNPNNKDIRDIPGLAPPA 255

Query: 121 QSRKLLW 128
           QSRKLL+
Sbjct: 256 QSRKLLY 262

[Close]

BLAST of Carg23241 vs. ExPASy Swiss-Prot
Match: Q9LRP1 (Novel plant SNARE 13 OS=Arabidopsis thaliana OX=3702 GN=NPSN13 PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 9.0e-47
Identity = 95/127 (74.80%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 1   MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 60
           M+NQ+LVD G K MDETD+AIERSK+VV++T+ VGT+TAA LK QT+QM R+VN LD+I 
Sbjct: 136 MSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQTDQMGRVVNHLDTIQ 195

Query: 61  FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA 120
           FS+KKAS+LVKE+GRQ+ATDKCIM  LF+IV GV+AIIIVK+VNPNNKDI+DIPGLAPPA
Sbjct: 196 FSIKKASQLVKEIGRQVATDKCIMGFLFLIVCGVVAIIIVKIVNPNNKDIRDIPGLAPPA 255

Query: 121 QSRKLLW 128
           QSRKLL+
Sbjct: 256 QSRKLLY 262

[Close]

BLAST of Carg23241 vs. ExPASy Swiss-Prot
Match: O88384 (Vesicle transport through interaction with t-SNAREs homolog 1B OS=Mus musculus OX=10090 GN=Vti1b PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.3e-04
Identity = 23/98 (23.47%), Postives = 60/98 (61.22%), Query Frame = 0


Query: 2   TNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIHF 61
           + + L+ +G + ++   ++IERS ++  ET  +GTE    L  Q +Q+ R  + L + + 
Sbjct: 127 SQRALLLQGTESLNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNE 186

Query: 62  SLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIII 100
           +L K+ K+++ + R++ T+K +++++ ++ L ++  ++
Sbjct: 187 NLSKSRKILRSMSRKVITNKLLLSVIILLELAILVGLV 224

[Close]

BLAST of Carg23241 vs. ExPASy Swiss-Prot
Match: Q54CK6 (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Dictyostelium discoideum OX=44689 GN=vti1A PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.6e-04
Identity = 24/91 (26.37%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 9   RGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIHFSLKKASK 68
           +G+ M+D T + + R+ ++  ++  +G      L  Q EQ+  + ++L      +K A K
Sbjct: 121 QGSNMLDSTSDRLLRTHQISAQSEQIGQNILMDLGKQGEQIRGMRDKLHETDDQIKSARK 180

Query: 69  LVKELGRQIATDKCIMALLFIIVLGVIAIII 100
           ++  + R++AT+K I++++ ++++G+IA+II
Sbjct: 181 IMTGIARRLATNKVILSIIILLLMGIIALII 211

[Close]

BLAST of Carg23241 vs. ExPASy TrEMBL
Match: A0A6J1HN11 (novel plant SNARE 11-like OS=Cucurbita maxima OX=3661 GN=LOC111465090 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 8.8e-61
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 60
           MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH
Sbjct: 132 MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 191

Query: 61  FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA 120
           FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA
Sbjct: 192 FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA 251

Query: 121 QSRKLLWNSG 131
           QSRKLLWNSG
Sbjct: 252 QSRKLLWNSG 261

[Close]

BLAST of Carg23241 vs. ExPASy TrEMBL
Match: A0A6J1E6L5 (novel plant SNARE 11-like OS=Cucurbita moschata OX=3662 GN=LOC111431082 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 8.8e-61
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 60
           MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH
Sbjct: 132 MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 191

Query: 61  FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA 120
           FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA
Sbjct: 192 FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA 251

Query: 121 QSRKLLWNSG 131
           QSRKLLWNSG
Sbjct: 252 QSRKLLWNSG 261

[Close]

BLAST of Carg23241 vs. ExPASy TrEMBL
Match: A0A1S3BLC3 (novel plant SNARE 11 OS=Cucumis melo OX=3656 GN=LOC103490829 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.4e-58
Identity = 124/130 (95.38%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 60
           MTNQQL+D GN+MMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH
Sbjct: 132 MTNQQLIDSGNRMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 191

Query: 61  FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA 120
           FSLKKASKLVKELGRQ+ATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDI+DIPGLAPP 
Sbjct: 192 FSLKKASKLVKELGRQVATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIRDIPGLAPPV 251

Query: 121 QSRKLLWNSG 131
           QSRKLLWNSG
Sbjct: 252 QSRKLLWNSG 261

[Close]

BLAST of Carg23241 vs. ExPASy TrEMBL
Match: A0A5D3CJJ3 (Putative plant SNARE 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00890 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.4e-58
Identity = 124/130 (95.38%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 60
           MTNQQL+D GN+MMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH
Sbjct: 132 MTNQQLIDSGNRMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 191

Query: 61  FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA 120
           FSLKKASKLVKELGRQ+ATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDI+DIPGLAPP 
Sbjct: 192 FSLKKASKLVKELGRQVATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIRDIPGLAPPV 251

Query: 121 QSRKLLWNSG 131
           QSRKLLWNSG
Sbjct: 252 QSRKLLWNSG 261

[Close]

BLAST of Carg23241 vs. ExPASy TrEMBL
Match: A0A5A7TG65 (Putative plant SNARE 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold477G00050 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.4e-58
Identity = 124/130 (95.38%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 60
           MTNQQL+D GN+MMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH
Sbjct: 539 MTNQQLIDSGNRMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 598

Query: 61  FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA 120
           FSLKKASKLVKELGRQ+ATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDI+DIPGLAPP 
Sbjct: 599 FSLKKASKLVKELGRQVATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIRDIPGLAPPV 658

Query: 121 QSRKLLWNSG 131
           QSRKLLWNSG
Sbjct: 659 QSRKLLWNSG 668

[Close]

BLAST of Carg23241 vs. TAIR 10
Match: AT2G35190.1 (novel plant snare 11 )

HSP 1 Score: 208.4 bits (529), Expect = 3.5e-54
Identity = 105/130 (80.77%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 60
           M+NQ+L+D+GN MMD+TD+AIER KK+VQET+NVGT+T+AALKAQTEQMSR+VNELDSIH
Sbjct: 134 MSNQELMDKGNSMMDDTDQAIERGKKIVQETINVGTDTSAALKAQTEQMSRVVNELDSIH 193

Query: 61  FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIP--GLAP 120
           FSLKKASKLVKE+GRQ+ATDKCIMA LF+IV+GVIAIIIVK+VNPNNKDI+DIP  GLAP
Sbjct: 194 FSLKKASKLVKEIGRQVATDKCIMAFLFLIVIGVIAIIIVKIVNPNNKDIRDIPGVGLAP 253

Query: 121 PAQSRKLLWN 129
           PA +R+LLWN
Sbjct: 254 PAMNRRLLWN 263

[Close]

BLAST of Carg23241 vs. TAIR 10
Match: AT1G48240.1 (novel plant snare 12 )

HSP 1 Score: 189.1 bits (479), Expect = 2.2e-48
Identity = 97/127 (76.38%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 60
           M+NQ+LVD G K MDETD+AIERSK+VV +T+ VGT+TA+ LK QT+QM R+VN+LD+I 
Sbjct: 136 MSNQELVDAGMKRMDETDQAIERSKQVVHQTLEVGTQTASNLKGQTDQMGRVVNDLDTIQ 195

Query: 61  FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA 120
           FSLKKAS+LVKE+GRQ+ATDKCIMA LF+IV GVIAIIIVK+VNPNNKDI+DIPGLAPPA
Sbjct: 196 FSLKKASQLVKEIGRQVATDKCIMAFLFLIVCGVIAIIIVKIVNPNNKDIRDIPGLAPPA 255

Query: 121 QSRKLLW 128
           QSRKLL+
Sbjct: 256 QSRKLLY 262

[Close]

BLAST of Carg23241 vs. TAIR 10
Match: AT3G17440.1 (novel plant snare 13 )

HSP 1 Score: 187.6 bits (475), Expect = 6.4e-48
Identity = 95/127 (74.80%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 1   MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 60
           M+NQ+LVD G K MDETD+AIERSK+VV++T+ VGT+TAA LK QT+QM R+VN LD+I 
Sbjct: 136 MSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQTDQMGRVVNHLDTIQ 195

Query: 61  FSLKKASKLVKELGRQIATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIQDIPGLAPPA 120
           FS+KKAS+LVKE+GRQ+ATDKCIM  LF+IV GV+AIIIVK+VNPNNKDI+DIPGLAPPA
Sbjct: 196 FSIKKASQLVKEIGRQVATDKCIMGFLFLIVCGVVAIIIVKIVNPNNKDIRDIPGLAPPA 255

Query: 121 QSRKLLW 128
           QSRKLL+
Sbjct: 256 QSRKLLY 262

[Close]

BLAST of Carg23241 vs. TAIR 10
Match: AT3G17440.2 (novel plant snare 13 )

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-23
Identity = 53/77 (68.83%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 1   MTNQQLVDRGNKMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIH 60
           M+NQ+LVD G K MDETD+AIERSK+VV++T+ VGT+TAA LK QT+QM R+VN LD+I 
Sbjct: 136 MSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQTDQMGRVVNHLDTIQ 195

Query: 61  FSLKKASKLVKELGRQI 78
           FS+KKAS+LVKE+GRQ+
Sbjct: 196 FSIKKASQLVKEIGRQV 212

The following BLAST results are available for this feature:

BLAST of Carg23241 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015688.1	1.8e-60	100.00	putative plant SNARE 11, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023553230.1	1.8e-60	100.00	novel plant SNARE 11-like [Cucurbita pepo subsp. pepo]	[more]
XP_022923361.1	1.8e-60	100.00	novel plant SNARE 11-like [Cucurbita moschata] >XP_022965148.1 novel plant SNARE...	[more]
KAA0041036.1	2.9e-58	95.38	putative plant SNARE 11 [Cucumis melo var. makuwa]	[more]
XP_008448761.1	2.9e-58	95.38	PREDICTED: novel plant SNARE 11 [Cucumis melo] >XP_008448762.1 PREDICTED: novel ...	[more]

BLAST of Carg23241 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q944A9	5.0e-53	80.77	Novel plant SNARE 11 OS=Arabidopsis thaliana OX=3702 GN=NPSN11 PE=1 SV=2	[more]
Q9LNH6	3.1e-47	76.38	Novel plant SNARE 12 OS=Arabidopsis thaliana OX=3702 GN=NPSN12 PE=2 SV=1	[more]
Q9LRP1	9.0e-47	74.80	Novel plant SNARE 13 OS=Arabidopsis thaliana OX=3702 GN=NPSN13 PE=1 SV=1	[more]
O88384	4.3e-04	23.47	Vesicle transport through interaction with t-SNAREs homolog 1B OS=Mus musculus O...	[more]
Q54CK6	5.6e-04	26.37	Vesicle transport through interaction with t-SNAREs homolog 1A OS=Dictyostelium ...	[more]

BLAST of Carg23241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HN11	8.8e-61	100.00	novel plant SNARE 11-like OS=Cucurbita maxima OX=3661 GN=LOC111465090 PE=4 SV=1	[more]
A0A6J1E6L5	8.8e-61	100.00	novel plant SNARE 11-like OS=Cucurbita moschata OX=3662 GN=LOC111431082 PE=4 SV=...	[more]
A0A1S3BLC3	1.4e-58	95.38	novel plant SNARE 11 OS=Cucumis melo OX=3656 GN=LOC103490829 PE=4 SV=1	[more]
A0A5D3CJJ3	1.4e-58	95.38	Putative plant SNARE 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TG65	1.4e-58	95.38	Putative plant SNARE 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Carg23241 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35190.1	3.5e-54	80.77	novel plant snare 11	[more]
AT1G48240.1	2.2e-48	76.38	novel plant snare 12	[more]
AT3G17440.1	6.4e-48	74.80	novel plant snare 13	[more]
AT3G17440.2	2.5e-23	68.83	novel plant snare 13	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000727	Target SNARE coiled-coil homology domain	SMART	SM00397	tSNARE_6	coord: 6..73 e-value: 4.1E-12 score: 56.2
IPR000727	Target SNARE coiled-coil homology domain	PROSITE	PS50192	T_SNARE	coord: 11..73 score: 12.568952
IPR005606	Sec20	PFAM	PF03908	Sec20	coord: 19..101 e-value: 1.2E-8 score: 34.7
None	No IPR available	GENE3D	1.20.5.110		coord: 2..81 e-value: 2.1E-17 score: 65.0
None	No IPR available	PANTHER	PTHR21230	VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED	coord: 1..119
None	No IPR available	PANTHER	PTHR21230:SF27	NOVEL PLANT SNARE 11	coord: 1..119
None	No IPR available	SUPERFAMILY	58038	SNARE fusion complex	coord: 1..74
IPR044766	NPSN/SNAP25-like, N-terminal SNARE domain	CDD	cd15861	SNARE_SNAP25N_23N_29N_SEC9N	coord: 8..72 e-value: 8.24846E-22 score: 80.3099

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23241-RA	Carg23241-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
biological_process	GO:0006906	vesicle fusion
cellular_component	GO:0009504	cell plate
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0012507	ER to Golgi transport vesicle membrane
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031902	late endosome membrane
cellular_component	GO:0031201	SNARE complex
molecular_function	GO:0005484	SNAP receptor activity
molecular_function	GO:0000149	SNARE binding