Carg23009 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23009
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	CCHC-type domain-containing protein
Location	Carg_Chr05: 11039778 .. 11043108 (+)
RNA-Seq Expression	Carg23009
Synteny	Carg23009

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAATCTTTCCCCGCCGAGTGAAGTTTGCGAATAGCGAGAGGGATCGAACATGGATAAGGACAACGCCGCCGTCGCAGCGCCGACGGGATGCTACAAGTGCGGGAAGCCGGGCCACTGGTCTCGTGATTGTCCGTCCTCTGCTCCAAATCCCAATTCTTCGAGACCTCCTTCCTCTTCTGCTCCTGCTGCCCCTTCAAAAGTTGCAGAGAAGCCCAAAAAGGCTCCCAGAGTCAGGCCCAAGCTCACACCCGAGCTACTCCTTTCCGAGGATGGTCTAGGTTATGTCCTTCGCCATTTTCCTCGCGCTTTCAAGTATCGCGGCCGTGGACACGAGGTTATCTTCTTTATTATTTGGTTCCATTCCTATCCTTCCTACTATTATGTAATTGGTCGATTTGTTCTGATATGGTATATACGAGTTGTTTATCGAGACATCTCCACAAGAAATACTAATTTCTAGAGTGTGGCGTGTTTTCGTATCATCTTAGATATGAACATGGTTAGTGTAGGAAATTATGAGGTGTTTTGGTTAGTTAATGGCTCCCTGAGGTTTTAGGTCTTTGTGTTGATGCATCATTAGAAACAAAGTTGAATGCCAATAATGTTTTCTTTTGAAGAACTGCCATCAGCGGCAATCGGGATTTACCTGAATAGTTTGTTTATTGGGCGCTACTTAACGTACAACCAGATTGCAAATCCTTTTCCATTGAAATTCAGCTGTATATATCTTTCATCTTCTAATGATTTGATTCTTATAATGACTGAATTATACTTTTGATTGTTGTTTTGTAGATCAGTGATTTGGAAAACTTGATTGGCTTATACAGGGAATGGCATTCTCATATACTCCCTTATTACCCTTTCGAGCATTTTGTACATAAGGTTGAACAAGTAGCTGCTACGAAACGGGTTAAGGTAAAAATGTGCATGAACCCTGAATTTATATGTTCTTTTATGATGAAGGCATCGCAGAGGTGTAGATATATATAGCTAGCTGGATTGGTATGGGTGTCAAAGTACAGAAGTTTGGCCTATTAACATACTAATATAGTTGCCATTTGAACTAAATGAACTGCTCTTAAGAAACCCATTGAATCAATAATGAGCAACTTTGTTGGTTATATGATATCTATTTTGCAATGAATTGGTGTTCTTTCTAAAAAGTCATATTTTGAGCAGATGTGTCTTGGAGAACTAAGAGAGAAAGTTGCCAGGGGAGGAGATCCTACAAAGTGGCGCGAATCACCCATTGTAAATGATGCTGATGATGATATCAATAATGAAAACGGTAGTTTCTAGTGTTCTCCTTTATTGAAAGACACTCACTATCAGTATTTTTATCATCTGTTTGGTTATAATAGAATGTATGTTATCTAATTGTGTTCGTGTTTAGTAAGATAAGTACTGTCCTCTAACTCTATTTAAAAGTTCAACATTGGTTCAGATGATAAATTTGAAGTTAATCGAACTTCCAAAACAAGGAAGCAAGAAACAATTATTAAAGAAAAAAGCGGTTGAAATCGAACATGATGCATTAGTTTATTGGTGTTCTATACTGATTTCTAGAGTAAGGTATCATGTAATTTCTCGAAAAGAAGCCATGTCTATAGCTATGAACATTGAACAACACGAATGAAAGATATACTAGTTCTATCATCGGTTTTTTATGGCCACCCAAGACAAGAGTTCCTTGAAAACATCCAATATTCCTTATAAGGGCGTGGAAACCTCTCCCTAGTACCTAGTAGACGTGTTTTAAAAAATCTTGAAAGGAAGTCCGAAAGGAAAATCCCAAAGATGACAGATGACAATATATACCAGCCGTAGGTTTGGGCCGTTACAAAATAAAACCTAGAAAGTTAGAACCCATCCATTGTAGTAATATGTTCTTATGTTCTGAACTATACTCTTGAAATAATGATCGGGAAAAAAAAGATTCTAAAACTAATCATTATTTGAGTACCCCTTGTCTTGAACTTCAACTCGTCTGTCAATGCTTGCAGAAGCCAAAGACTCGGAGGGCTTATTCGATAATCAGGAAGAGGCTTCTTTCAAGAATAATGGTGCTGATGACATTGAAGAGGACATGCTTCAGGAAGTTTATGAGAAAGCTACGGAAGTAAGTCTCTCTCTCTTCATTTTTTTTCTTGAACACTTGGTTGCTTTCCATCTTTACGATTGAGTTAGTTTTGATCGTACCGTTTCTTACTGAGAAAACCCTCCCAGATATTGAATTGAATGAAGAAACTTTACCATGAACCGTAAATGTAGATTTCAGGAATAGTAGTAATGAATCAAACTATGTTTTCAGTCATTGTCAGTGCTGATTATTAAAAATCTACATGTTAATGACCCAATTACTTATAATTTGCACTTAAAACTTATTTTATTAGGTGCGCCCTTTCTAATTATTGCACAAGTTAATGTATCTTCATATTTGGTCATAGAATAGTCACCTACTGGCTGGAAAAGAAACGCCATGAAAGTTTAACGTGTATCTCTGTGATATTTTGGGGAGGAGAACGAAACATTTTTTTATAAAGGTATAGAAATTTCTCCCTTGTAGACATGTTTTAAAAATCTTGAGAGAAGCTCAAAAGGTAAAATCTAAAAAGAACAATATTTGCTAGCAGTAGGCTTGAGCGTTACATAATGTCTCTAGGTTCAAAGTACTTTCTTTAAATATGATGAAAAACAATATCTTAGGTCAAAACCCGTGGCTGCATATTGGTATTTGAATCGAACCCTCCACTTGATGAGAAACTTCAATCAAGAATACCTCCATTCCTGTTCTTTCTAACTCGAGTTAACGATCTACAACATTTGATGATGGGTTTTATGTACATGATTGTAGGAGGAGCCATTGATGAATTTGCAAAGTGATTCCTTCACCATTGGGGAAACTATGGAAGGTGTTGTCAACCAAGAACCAAACACTAGCAATTCAAATGAAACTCTGCTCACAGAACAACAGAGAGCTCGAATGGAAGCAAACAGGTTGAAGGCATTAGAACGAGCTGCAGCCAAGGCCCGCTCATCGCCAACTGCCTGATTCATGTGCTTGCTTTGTGTAGATTAACTTTGATTGCAAAGCCAAATTACGATCAATGTGTGTGTCTTAGGAACCCGAGTTCAAGAAGGTTCAGAAGTTTACTGAGTTTACACTTATCAAATCGGTTCCTATTTCAATTCGTGTGCTTGAAAATTCGACTTTATCGCACTCAATAACGGGAAACTCAAGAAAAATTATTAAACAACTGTTTTGAAGGTAGAAACCGTAAGACGAACATGACTCTCCACAATGGTATAATATTGTCCTCTTTAAACA

mRNA sequence

AAACAATCTTTCCCCGCCGAGTGAAGTTTGCGAATAGCGAGAGGGATCGAACATGGATAAGGACAACGCCGCCGTCGCAGCGCCGACGGGATGCTACAAGTGCGGGAAGCCGGGCCACTGGTCTCGTGATTGTCCGTCCTCTGCTCCAAATCCCAATTCTTCGAGACCTCCTTCCTCTTCTGCTCCTGCTGCCCCTTCAAAAGTTGCAGAGAAGCCCAAAAAGGCTCCCAGAGTCAGGCCCAAGCTCACACCCGAGCTACTCCTTTCCGAGGATGGTCTAGGTTATGTCCTTCGCCATTTTCCTCGCGCTTTCAAGTATCGCGGCCGTGGACACGAGATCAGTGATTTGGAAAACTTGATTGGCTTATACAGGGAATGGCATTCTCATATACTCCCTTATTACCCTTTCGAGCATTTTGTACATAAGGTTGAACAAGTAGCTGCTACGAAACGGGTTAAGATGTGTCTTGGAGAACTAAGAGAGAAAGTTGCCAGGGGAGGAGATCCTACAAAGTGGCGCGAATCACCCATTGTAAATGATGCTGATGATGATATCAATAATGAAAACGAAGCCAAAGACTCGGAGGGCTTATTCGATAATCAGGAAGAGGCTTCTTTCAAGAATAATGGTGCTGATGACATTGAAGAGGACATGCTTCAGGAAGTTTATGAGAAAGCTACGGAAGAGGAGCCATTGATGAATTTGCAAAGTGATTCCTTCACCATTGGGGAAACTATGGAAGGTGTTGTCAACCAAGAACCAAACACTAGCAATTCAAATGAAACTCTGCTCACAGAACAACAGAGAGCTCGAATGGAAGCAAACAGGTTGAAGGCATTAGAACGAGCTGCAGCCAAGGCCCGCTCATCGCCAACTGCCTGATTCATGTGCTTGCTTTGTGTAGATTAACTTTGATTGCAAAGCCAAATTACGATCAATGTGTGTGTCTTAGGAACCCGAGTTCAAGAAGGTTCAGAAGTTTACTGAGTTTACACTTATCAAATCGGTTCCTATTTCAATTCGTGTGCTTGAAAATTCGACTTTATCGCACTCAATAACGGGAAACTCAAGAAAAATTATTAAACAACTGTTTTGAAGGTAGAAACCGTAAGACGAACATGACTCTCCACAATGGTATAATATTGTCCTCTTTAAACA

Coding sequence (CDS)

ATGGATAAGGACAACGCCGCCGTCGCAGCGCCGACGGGATGCTACAAGTGCGGGAAGCCGGGCCACTGGTCTCGTGATTGTCCGTCCTCTGCTCCAAATCCCAATTCTTCGAGACCTCCTTCCTCTTCTGCTCCTGCTGCCCCTTCAAAAGTTGCAGAGAAGCCCAAAAAGGCTCCCAGAGTCAGGCCCAAGCTCACACCCGAGCTACTCCTTTCCGAGGATGGTCTAGGTTATGTCCTTCGCCATTTTCCTCGCGCTTTCAAGTATCGCGGCCGTGGACACGAGATCAGTGATTTGGAAAACTTGATTGGCTTATACAGGGAATGGCATTCTCATATACTCCCTTATTACCCTTTCGAGCATTTTGTACATAAGGTTGAACAAGTAGCTGCTACGAAACGGGTTAAGATGTGTCTTGGAGAACTAAGAGAGAAAGTTGCCAGGGGAGGAGATCCTACAAAGTGGCGCGAATCACCCATTGTAAATGATGCTGATGATGATATCAATAATGAAAACGAAGCCAAAGACTCGGAGGGCTTATTCGATAATCAGGAAGAGGCTTCTTTCAAGAATAATGGTGCTGATGACATTGAAGAGGACATGCTTCAGGAAGTTTATGAGAAAGCTACGGAAGAGGAGCCATTGATGAATTTGCAAAGTGATTCCTTCACCATTGGGGAAACTATGGAAGGTGTTGTCAACCAAGAACCAAACACTAGCAATTCAAATGAAACTCTGCTCACAGAACAACAGAGAGCTCGAATGGAAGCAAACAGGTTGAAGGCATTAGAACGAGCTGCAGCCAAGGCCCGCTCATCGCCAACTGCCTGA

Protein sequence

MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNSSRPPSSSAPAAPSKVAEKPKKAPRVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGLFDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQEPNTSNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA

Homology

[Close]

BLAST of Carg23009 vs. NCBI nr
Match: KAG6599343.1 (TIMELESS-interacting protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030333.1 TIMELESS-interacting protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 538.1 bits (1385), Expect = 4.4e-149
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0


Query: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNSSRPPSSSAPAAPSKVAEKPKKAPR 60
           MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNSSRPPSSSAPAAPSKVAEKPKKAPR
Sbjct: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNSSRPPSSSAPAAPSKVAEKPKKAPR 60

Query: 61  VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE 120
           VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE
Sbjct: 61  VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE 120

Query: 121 HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL 180
           HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL
Sbjct: 121 HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL 180

Query: 181 FDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQEPNTS 240
           FDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQEPNTS
Sbjct: 181 FDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQEPNTS 240

Query: 241 NSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 277
           NSNETLLTEQQRARMEANRLKALERAAAKARSSPTA
Sbjct: 241 NSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 276

[Close]

BLAST of Carg23009 vs. NCBI nr
Match: XP_022946681.1 (TIMELESS-interacting protein [Cucurbita moschata])

HSP 1 Score: 531.2 bits (1367), Expect = 5.4e-147
Identity = 275/277 (99.28%), Postives = 275/277 (99.28%), Query Frame = 0


Query: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNSSRPPSSSAPAAPSKVAEKPKKAPR 60
           MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNSS PPSSSAPAAPSKVAEKPKKAPR
Sbjct: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNSSSPPSSSAPAAPSKVAEKPKKAPR 60

Query: 61  VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE 120
           VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE
Sbjct: 61  VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE 120

Query: 121 HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL 180
           HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL
Sbjct: 121 HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL 180

Query: 181 FDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQ-EPNT 240
           FDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQ EPNT
Sbjct: 181 FDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQEEPNT 240

Query: 241 SNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 277
           SNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA
Sbjct: 241 SNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 277

[Close]

BLAST of Carg23009 vs. NCBI nr
Match: XP_022999094.1 (TIMELESS-interacting protein [Cucurbita maxima])

HSP 1 Score: 525.4 bits (1352), Expect = 3.0e-145
Identity = 272/277 (98.19%), Postives = 273/277 (98.56%), Query Frame = 0


Query: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNSSRPPSSSAPAAPSKVAEKPKKAPR 60
           MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPN SRPPSSSAPAAP KVAEKPKKAPR
Sbjct: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNFSRPPSSSAPAAPPKVAEKPKKAPR 60

Query: 61  VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE 120
           VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE
Sbjct: 61  VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE 120

Query: 121 HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL 180
           HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL
Sbjct: 121 HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL 180

Query: 181 FDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQ-EPNT 240
           FDNQEEAS KNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGET+EGVVNQ EPNT
Sbjct: 181 FDNQEEASLKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETVEGVVNQEEPNT 240

Query: 241 SNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 277
           SNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA
Sbjct: 241 SNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 277

[Close]

BLAST of Carg23009 vs. NCBI nr
Match: XP_023545691.1 (TIMELESS-interacting protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 520.8 bits (1340), Expect = 7.3e-144
Identity = 272/278 (97.84%), Postives = 273/278 (98.20%), Query Frame = 0


Query: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNSSRPPSSSAPAAPSKVAEKPKKAPR 60
           MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNSSRPPSSSAPAAP KVAEKPKKAPR
Sbjct: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNSSRPPSSSAPAAPPKVAEKPKKAPR 60

Query: 61  VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE 120
           VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE
Sbjct: 61  VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE 120

Query: 121 HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVN-DADDDINNENEAKDSEG 180
           HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVN D DDDINNENEAKDSEG
Sbjct: 121 HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDDDDDDINNENEAKDSEG 180

Query: 181 LFDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQ-EPN 240
           LFDNQEEAS KNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGET+EGVVNQ EPN
Sbjct: 181 LFDNQEEASLKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETVEGVVNQEEPN 240

Query: 241 TSNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 277
           TSNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA
Sbjct: 241 TSNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 278

[Close]

BLAST of Carg23009 vs. NCBI nr
Match: XP_038889611.1 (TIMELESS-interacting protein [Benincasa hispida])

HSP 1 Score: 456.4 bits (1173), Expect = 1.7e-124
Identity = 244/296 (82.43%), Postives = 255/296 (86.15%), Query Frame = 0


Query: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNP---------------------NSSRP 60
           M+KDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNP                     NSSRP
Sbjct: 1   MEKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNPTSNSSSDCPSSAPNPNPTSNSSRP 60

Query: 61  PSSSAPAAPSKVAEKPKKAPRVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDL 120
           P SSAPAAPSKVAEKPKKAPR RPKLTPELLLSEDGLGYVLRHFPR FKYRGRGHEISDL
Sbjct: 61  PFSSAPAAPSKVAEKPKKAPRTRPKLTPELLLSEDGLGYVLRHFPRVFKYRGRGHEISDL 120

Query: 121 ENLIGLYREWHSHILPYYPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESP 180
            NLIGLYREWHSHILPYY FEHFVHKVEQVAATKRVKMCLGELRE+VARGGDPTKWRE+P
Sbjct: 121 GNLIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAP 180

Query: 181 IVNDADDDINNENEAKDSEGLFDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQ 240
           I+N  DDD+NNE EAKD EG+FDNQEEA  +NNGADDIEEDMLQEVYEKAT EEP  N+Q
Sbjct: 181 ILN--DDDVNNEKEAKDPEGIFDNQEEA-LRNNGADDIEEDMLQEVYEKAT-EEPSQNVQ 240

Query: 241 SDSFTIGETMEGVVNQEPNTSNSNETLLTEQQRARMEANRLKALERAAAKARSSPT 276
           SDSFTIGET+EGV NQEP  SNS+ET LTE+QR RMEANRLKALERAAAKARS PT
Sbjct: 241 SDSFTIGETIEGVANQEPKISNSSETQLTEEQRGRMEANRLKALERAAAKARSLPT 292

[Close]

BLAST of Carg23009 vs. ExPASy Swiss-Prot
Match: Q91WA1 (TIMELESS-interacting protein OS=Mus musculus OX=10090 GN=Tipin PE=1 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 3.9e-07
Identity = 75/249 (30.12%), Postives = 104/249 (41.77%), Query Frame = 0


Query: 28  PSSAPNPNSSRPPSSSAP--AAPSKVAEKPKK-APRVRPKLTPELLLSEDGLGYVLRHFP 87
           P   P  +  R P+ + P   + S V   PK+   R  PKL    L SE GL   LRH  
Sbjct: 24  PPFPPPASPERDPADAEPEEGSGSGVPVPPKRTVKRNLPKLDATRLTSERGLP-ALRHVF 83

Query: 88  RAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFEHFVHKVEQVAATKRVKMCLGELRE 147
              K++G+GHE  DL+ LI     W   + P   FE F+ +VE +   K V+ CL  +R 
Sbjct: 84  DKTKFKGKGHEAEDLKTLIRHMEHWAHRLFPKLQFEDFIDRVENLGNKKEVQTCLKRIR- 143

Query: 148 KVARGGDPTKWRESPIVNDADDDINNENEAKDSEGLFDNQEEASFKNNGADDIEEDMLQE 207
                       + PIV+  +D +NN +E  ++              NG D         
Sbjct: 144 -----------LDLPIVH--EDFVNNNDEVGEA--------------NGPD--------- 203

Query: 208 VYEKATEEEPLMNLQSDSFTIGETMEGVVNQEPNTSNSNETLLTEQQRARMEANRLKALE 267
               AT  +P +   SDS             EP  S      LTE+Q+ R+E N+  ALE
Sbjct: 204 --VSATGFDPFLTSSSDSRKFA--------SEPTRS------LTEEQQQRIERNKQLALE 218

Query: 268 RAAAKARSS 274
           R  AK  S+
Sbjct: 264 RRQAKLLSN 218

[Close]

BLAST of Carg23009 vs. ExPASy Swiss-Prot
Match: Q4QR88 (TIMELESS-interacting protein OS=Rattus norvegicus OX=10116 GN=Tipin PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.1e-07
Identity = 61/236 (25.85%), Postives = 104/236 (44.07%), Query Frame = 0


Query: 20  PGHWSRDCPSSAPNPNSSRPPSSSAPAAPSKVAEKPKKAPRVRPKLTPELLLSEDGLGYV 79
           PG   RD   + P+  S  P     P  P ++ +      R  PKL    L SE GL   
Sbjct: 29  PGSPERDPAEAEPDEGSGAP----VPVPPKRIVK------RNIPKLDATRLTSERGLP-A 88

Query: 80  LRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFEHFVHKVEQVAATKRVKMCL 139
           LRH     K++G+GHE  DL+ LI     W   + P   FE F+ +VE +   K V+ CL
Sbjct: 89  LRHVFDKTKFKGKGHEAEDLKTLIRHMEHWAHRLFPKLQFEDFIDRVENLGNKKEVQTCL 148

Query: 140 GELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL------FD-----NQEEAS 199
             +R             + PIV+  +D +NN +E +++  L      FD     + +   
Sbjct: 149 KRIR------------LDLPIVH--EDFVNNNDEVEETNSLDAAATGFDAFVTSSSDSKR 208

Query: 200 FKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQEPNTSNSNE 245
           F +  + ++ E+  Q +  +  ++  L   Q+   +  +++E  V  E +++  N+
Sbjct: 209 FASEASRNLTEEQQQRI--EKNKQLALERRQAKLLSNSQSLENDVTVEESSTGENQ 237

[Close]

BLAST of Carg23009 vs. ExPASy Swiss-Prot
Match: Q9BVW5 (TIMELESS-interacting protein OS=Homo sapiens OX=9606 GN=TIPIN PE=1 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-06
Identity = 58/198 (29.29%), Postives = 90/198 (45.45%), Query Frame = 0


Query: 37  SRPPSSSAPAAPSKVAEKPKKAPRVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEI 96
           + P   S   AP +V  K +   R  PKL  + L+SE GL   LRH     K++G+GHE 
Sbjct: 40  TEPDEESGNGAPVRVPPK-RTVKRNIPKLDAQRLISERGLP-ALRHVFDKAKFKGKGHEA 99

Query: 97  SDLENLIGLYREWHSHILPYYPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWR 156
            DL+ LI     W   + P   FE F+ +VE + + K V+ CL  +R       D     
Sbjct: 100 EDLKMLIRHMEHWAHRLFPKLQFEDFIDRVEYLGSKKEVQTCLKRIRL------DLPILH 159

Query: 157 ESPIVNDADDDINNENEAKDSE---GLFDNQEEASFKNNGADDIEEDMLQEV--YEKATE 216
           E  + N+ +   NNE++   +E    L +  E   F +  +  + E+  Q +   ++   
Sbjct: 160 EDFVSNNDEVAENNEHDVTSTELDPFLTNLSESEMFASELSRSLTEEQQQRIERNKQLAL 219

Query: 217 EEPLMNLQSDSFTIGETM 230
           E     L S+S T+G  M
Sbjct: 220 ERRQAKLLSNSQTLGNDM 229

[Close]

BLAST of Carg23009 vs. ExPASy Swiss-Prot
Match: Q3ZCC4 (TIMELESS-interacting protein OS=Bos taurus OX=9913 GN=TIPIN PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.1e-05
Identity = 62/229 (27.07%), Postives = 101/229 (44.10%), Query Frame = 0


Query: 37  SRPPSSSAPAAPSKVAEKPKKAPRVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEI 96
           + P   S   AP  V  K +   R  PKL  E L+SE GL   LRH     K++G+GHE 
Sbjct: 40  AEPEEESGRGAPVPVPPK-RTVKRNIPKLNAERLISERGLP-ALRHVFEKAKFKGKGHEA 99

Query: 97  SDLENLIGLYREWHSHILPYYPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWR 156
            DL+ LI     W   + P   FE F+ +VE +   K V+ CL  +R             
Sbjct: 100 EDLKTLIRHMEHWAHRLFPKLQFEDFIDRVECLGNKKEVQTCLKRIR------------L 159

Query: 157 ESPIVNDADDDINNENEAKDSEG-----------LFDNQEEASFKNNGADDIEEDMLQEV 216
           + PI++  +D ++N +E +++ G           L ++     F +  +  + E+  Q +
Sbjct: 160 DLPILH--EDFVSNNDEVEENNGHDVTATELDHFLTNSYGSVEFASESSRSLTEEEQQRI 219

Query: 217 --YEKATEEEPLMNLQSDSFTIGETMEGVVNQEPNTSNSNETLLTEQQR 253
              ++   E     L S+S ++G  +   VN  P+T  S      E+Q+
Sbjct: 220 ERNKQLALERRQAKLLSNSQSLGNDLS--VN-TPSTQTSEAGSTGEEQK 249

[Close]

BLAST of Carg23009 vs. ExPASy Swiss-Prot
Match: Q5F416 (TIMELESS-interacting protein OS=Gallus gallus OX=9031 GN=TIPIN PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 6.3e-05
Identity = 67/250 (26.80%), Postives = 106/250 (42.40%), Query Frame = 0


Query: 20  PGHWSRDCPSSAPNPNSSRPPSSSAPAAPSKVAEKPKKAPRVRPKLTPELLLSEDGLGYV 79
           PG    +   +  +P+ ++   +   ++ ++ A K     R  PKL    L+SE GL   
Sbjct: 34  PGRGDAEWAQANGDPDGNQQSETKDSSSAARKAVK-----RSIPKLDANRLVSERGLP-A 93

Query: 80  LRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFEHFVHKVEQVAATKRVKMCL 139
           LRH     K++G+GHE  DL+ L+     W   + P   F+ F+ +VE +   K V+ CL
Sbjct: 94  LRHMFDNVKFKGKGHEAEDLKTLLRHMEHWAHRLFPKLQFDDFIDRVESLGNKKEVQTCL 153

Query: 140 GELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGLFDNQEEASFKNNGADDIEE 199
             +R             + PI++  +D   NE    +S GL                   
Sbjct: 154 KRIR------------LDLPILH--EDFTANEGGGGESNGL------------------- 213

Query: 200 DMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQEPNTSNSNETLLTEQQRARMEANR 259
                  + ATEE     + S S  +GE     ++  P T+      LTE+Q+ R++ NR
Sbjct: 214 -------DMATEE-----VHSFSGNVGE-----LDSLPGTT------LTEEQQQRIKRNR 221

Query: 260 LKALERAAAK 270
             ALER  AK
Sbjct: 274 QLALERRQAK 221

[Close]

BLAST of Carg23009 vs. ExPASy TrEMBL
Match: A0A6J1G4B9 (TIMELESS-interacting protein OS=Cucurbita moschata OX=3662 GN=LOC111450673 PE=3 SV=1)

HSP 1 Score: 531.2 bits (1367), Expect = 2.6e-147
Identity = 275/277 (99.28%), Postives = 275/277 (99.28%), Query Frame = 0


Query: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNSSRPPSSSAPAAPSKVAEKPKKAPR 60
           MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNSS PPSSSAPAAPSKVAEKPKKAPR
Sbjct: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNSSSPPSSSAPAAPSKVAEKPKKAPR 60

Query: 61  VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE 120
           VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE
Sbjct: 61  VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE 120

Query: 121 HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL 180
           HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL
Sbjct: 121 HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL 180

Query: 181 FDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQ-EPNT 240
           FDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQ EPNT
Sbjct: 181 FDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQEEPNT 240

Query: 241 SNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 277
           SNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA
Sbjct: 241 SNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 277

[Close]

BLAST of Carg23009 vs. ExPASy TrEMBL
Match: A0A6J1KG39 (TIMELESS-interacting protein OS=Cucurbita maxima OX=3661 GN=LOC111493575 PE=3 SV=1)

HSP 1 Score: 525.4 bits (1352), Expect = 1.4e-145
Identity = 272/277 (98.19%), Postives = 273/277 (98.56%), Query Frame = 0


Query: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNSSRPPSSSAPAAPSKVAEKPKKAPR 60
           MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPN SRPPSSSAPAAP KVAEKPKKAPR
Sbjct: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNFSRPPSSSAPAAPPKVAEKPKKAPR 60

Query: 61  VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE 120
           VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE
Sbjct: 61  VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE 120

Query: 121 HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL 180
           HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL
Sbjct: 121 HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL 180

Query: 181 FDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQ-EPNT 240
           FDNQEEAS KNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGET+EGVVNQ EPNT
Sbjct: 181 FDNQEEASLKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETVEGVVNQEEPNT 240

Query: 241 SNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 277
           SNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA
Sbjct: 241 SNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 277

[Close]

BLAST of Carg23009 vs. ExPASy TrEMBL
Match: A0A5D3BGW4 (TIMELESS-interacting protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001060 PE=3 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 4.1e-124
Identity = 243/284 (85.56%), Postives = 253/284 (89.08%), Query Frame = 0


Query: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNP----NSSRPPSSSAPAAPSKVAEKPK 60
           MDKDN A+AAPTGCYKCGKPGHWSRDCPSSAPNP    NSS+PP SSAPAAPSK  EKPK
Sbjct: 1   MDKDNNAIAAPTGCYKCGKPGHWSRDCPSSAPNPNPTSNSSKPPFSSAPAAPSKAVEKPK 60

Query: 61  KAPRVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPY 120
           KAPR RPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPY
Sbjct: 61  KAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPY 120

Query: 121 YPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKD 180
           Y FEHFVHKVEQVAATKRVKMCLGELRE+VARGGDPTKWRE+PI+ND DDD+NNE EAKD
Sbjct: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILND-DDDVNNEKEAKD 180

Query: 181 SEGLFDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQE 240
            EG+FDN EEAS +NNGADDIEEDMLQEVYEKAT EEPL N QSDS T G TMEGV NQE
Sbjct: 181 PEGVFDNPEEASLRNNGADDIEEDMLQEVYEKAT-EEPLQNEQSDSLTTGGTMEGVANQE 240

Query: 241 PN----TSNSNETL-LTEQQRARMEANRLKALERAAAKARSSPT 276
           PN    TSNS+ET  LTE+QR RMEANRLKALERAAAKARS  T
Sbjct: 241 PNQEPKTSNSSETSELTEEQRVRMEANRLKALERAAAKARSLAT 282

[Close]

BLAST of Carg23009 vs. ExPASy TrEMBL
Match: A0A1S3C4P4 (TIMELESS-interacting protein OS=Cucumis melo OX=3656 GN=LOC103496437 PE=3 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 4.1e-124
Identity = 243/284 (85.56%), Postives = 253/284 (89.08%), Query Frame = 0


Query: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNP----NSSRPPSSSAPAAPSKVAEKPK 60
           MDKDN A+AAPTGCYKCGKPGHWSRDCPSSAPNP    NSS+PP SSAPAAPSK  EKPK
Sbjct: 1   MDKDNNAIAAPTGCYKCGKPGHWSRDCPSSAPNPNPTSNSSKPPFSSAPAAPSKAVEKPK 60

Query: 61  KAPRVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPY 120
           KAPR RPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPY
Sbjct: 61  KAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPY 120

Query: 121 YPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKD 180
           Y FEHFVHKVEQVAATKRVKMCLGELRE+VARGGDPTKWRE+PI+ND DDD+NNE EAKD
Sbjct: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILND-DDDVNNEKEAKD 180

Query: 181 SEGLFDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQE 240
            EG+FDN EEAS +NNGADDIEEDMLQEVYEKAT EEPL N QSDS T G TMEGV NQE
Sbjct: 181 PEGVFDNPEEASLRNNGADDIEEDMLQEVYEKAT-EEPLQNEQSDSLTTGGTMEGVANQE 240

Query: 241 PN----TSNSNETL-LTEQQRARMEANRLKALERAAAKARSSPT 276
           PN    TSNS+ET  LTE+QR RMEANRLKALERAAAKARS  T
Sbjct: 241 PNQEPKTSNSSETSELTEEQRVRMEANRLKALERAAAKARSLAT 282

[Close]

BLAST of Carg23009 vs. ExPASy TrEMBL
Match: A0A0A0LI96 (CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G009510 PE=3 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 2.0e-123
Identity = 237/280 (84.64%), Postives = 250/280 (89.29%), Query Frame = 0


Query: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNP----NSSRPPSSSAPAAPSKVAEKPK 60
           M+KDN AV APTGC+KCGKPGHWSRDCPSSAPNP    NSS P  SS PAAPSK  EKPK
Sbjct: 1   MEKDNNAVPAPTGCFKCGKPGHWSRDCPSSAPNPNPTSNSSTPSFSSPPAAPSKAVEKPK 60

Query: 61  KAPRVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPY 120
           KAPR RPKLTPELLLS+DGLGYVLRHFPRAFKYRGRGHEI+DLENLIGLYREWHSHILPY
Sbjct: 61  KAPRTRPKLTPELLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILPY 120

Query: 121 YPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKD 180
           Y FEHFVHKVEQVAATKRVKMCLGELRE+VARGGDPTKWRE+PI+ND DDD+NNE EAKD
Sbjct: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDDDDDVNNEKEAKD 180

Query: 181 SEGLFDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQE 240
            + +FDNQEEAS +NNGADDIEEDMLQEVYEKAT EEPL N QSDS TIG TMEGV NQE
Sbjct: 181 PDDVFDNQEEASLRNNGADDIEEDMLQEVYEKAT-EEPLQNEQSDSLTIGGTMEGVANQE 240

Query: 241 PNTSNSNETL-LTEQQRARMEANRLKALERAAAKARSSPT 276
           P TSNS+ET  LTE+QR RMEANRLKALERAAAKARS PT
Sbjct: 241 PKTSNSSETSELTEEQRVRMEANRLKALERAAAKARSLPT 279

[Close]

BLAST of Carg23009 vs. TAIR 10
Match: AT3G02820.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 224.9 bits (572), Expect = 7.7e-59
Identity = 145/287 (50.52%), Postives = 183/287 (63.76%), Query Frame = 0


Query: 9   AAPTGCYKCGKPGHWSRDCPSSAPNPNSSRPPSSSAPA---------APSKVAEKPKKAP 68
           +APTGC+KCG+PGHWSRDCPSSAP   ++   SSSAP+         + SK       AP
Sbjct: 3   SAPTGCFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNNEFQRSSSKSGTSIAPAP 62

Query: 69  RV------RPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHI 128
           +V      RPKLTPELLLSEDGLGYVLR+FP++FKYRGRG E+SDL NLI LY EWH+H+
Sbjct: 63  KVTKTRVQRPKLTPELLLSEDGLGYVLRYFPKSFKYRGRGKEVSDLGNLIRLYSEWHTHL 122

Query: 129 LPYYPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDA-DDDINNEN 188
           LPYY F+HFVHKV+QVA+TKRVK C+ ELRE+VA G DP K  E    N    DD + + 
Sbjct: 123 LPYYSFDHFVHKVQQVASTKRVKNCINELRERVASGVDPNKLYEKQEENTVPSDDQDMDQ 182

Query: 189 EAKDSEGLFDNQEEASFKNNGADDIEEDMLQEVYEKATE---EEPLMNLQSDSFTIGETM 248
            + D E +     +A   +  AD  E+ ML E+++ A++   +E  M+  S+      T 
Sbjct: 183 PSHDEENIPSKSVDA---DTNADAFEDSMLNEIFDNASKLPSDEQNMDKSSEL-----TE 242

Query: 249 EGVVNQEPNTSNSNETL--LTEQQRARMEANRLKALERAAAKARSSP 275
           E     E N   + E    ++E+QR RMEANRLKALER  AKAR  P
Sbjct: 243 EQRARMEANRLKAMEKAQNISEEQRVRMEANRLKALER--AKARLQP 279

[Close]

BLAST of Carg23009 vs. TAIR 10
Match: AT3G42860.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 42.7 bits (99), Expect = 5.4e-04
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 0


Query: 7   AVAAPTGCYKCGKPGHWSRDCPSSAPNP 35
           + +A   C+KCGKPGHWSRDC + + NP
Sbjct: 263 STSAAGDCFKCGKPGHWSRDCTAQSGNP 290

The following BLAST results are available for this feature:

BLAST of Carg23009 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599343.1	4.4e-149	100.00	TIMELESS-interacting protein, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022946681.1	5.4e-147	99.28	TIMELESS-interacting protein [Cucurbita moschata]	[more]
XP_022999094.1	3.0e-145	98.19	TIMELESS-interacting protein [Cucurbita maxima]	[more]
XP_023545691.1	7.3e-144	97.84	TIMELESS-interacting protein [Cucurbita pepo subsp. pepo]	[more]
XP_038889611.1	1.7e-124	82.43	TIMELESS-interacting protein [Benincasa hispida]	[more]

BLAST of Carg23009 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q91WA1	3.9e-07	30.12	TIMELESS-interacting protein OS=Mus musculus OX=10090 GN=Tipin PE=1 SV=2	[more]
Q4QR88	5.1e-07	25.85	TIMELESS-interacting protein OS=Rattus norvegicus OX=10116 GN=Tipin PE=2 SV=1	[more]
Q9BVW5	1.5e-06	29.29	TIMELESS-interacting protein OS=Homo sapiens OX=9606 GN=TIPIN PE=1 SV=2	[more]
Q3ZCC4	2.1e-05	27.07	TIMELESS-interacting protein OS=Bos taurus OX=9913 GN=TIPIN PE=2 SV=1	[more]
Q5F416	6.3e-05	26.80	TIMELESS-interacting protein OS=Gallus gallus OX=9031 GN=TIPIN PE=2 SV=1	[more]

BLAST of Carg23009 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G4B9	2.6e-147	99.28	TIMELESS-interacting protein OS=Cucurbita moschata OX=3662 GN=LOC111450673 PE=3 ...	[more]
A0A6J1KG39	1.4e-145	98.19	TIMELESS-interacting protein OS=Cucurbita maxima OX=3661 GN=LOC111493575 PE=3 SV...	[more]
A0A5D3BGW4	4.1e-124	85.56	TIMELESS-interacting protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C4P4	4.1e-124	85.56	TIMELESS-interacting protein OS=Cucumis melo OX=3656 GN=LOC103496437 PE=3 SV=1	[more]
A0A0A0LI96	2.0e-123	84.64	CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G009510 P...	[more]

BLAST of Carg23009 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02820.1	7.7e-59	50.52	zinc knuckle (CCHC-type) family protein	[more]
AT3G42860.1	5.4e-04	57.14	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 13..29 e-value: 7.4E-7 score: 38.8
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 13..29 e-value: 1.5E-8 score: 34.3
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 14..29 score: 11.581206
IPR012923	Chromosome segregation in meiosis protein 3	PFAM	PF07962	Swi3	coord: 64..145 e-value: 1.5E-23 score: 82.5
None	No IPR available	GENE3D	4.10.60.10		coord: 10..64 e-value: 7.5E-10 score: 41.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..183
None	No IPR available	PANTHER	PTHR13220:SF11	TIMELESS-INTERACTING PROTEIN	coord: 9..272
IPR040038	TIPIN/Csm3/Swi3	PANTHER	PTHR13220	TIMELESS INTERACTING-RELATED	coord: 9..272
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 10..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23009-RA	Carg23009-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0000076	DNA replication checkpoint signaling
biological_process	GO:0043111	replication fork arrest
biological_process	GO:0048478	replication fork protection
cellular_component	GO:0031298	replication fork protection complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding