Carg22984 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22984
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	extensin-like isoform X3
Location	Carg_Chr02: 2004588 .. 2005407 (+)
RNA-Seq Expression	Carg22984
Synteny	Carg22984

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATATTTTCTAACGTTATCGTTCTCTTCGTGTTAGCGTGCATGTCAACTCTAAGCTCGGCCGACCCGGGTTGGTTTAGGGCTCGTAATACCACTTTTCCTTTCAGTTCTAGGCATAAACGTCCCCGGTTCTCGCCACCACCATCACGATGTTTGCCACAACCACCATCACGACCACGACAACCTCGAACACCACCACCATCACGACCACGACAACCTCGACCACCACCACCACCACGACGACGACGACGTTTGCCACCGTCCCCACCACCACCACGACGGCCTCGAATACCGCCATCACCATCATCGCCGACCCCACAAAATCCAAGAAAGATTATAGTGGGTGGTTCTAAGTATTGGCGTCTTGGGTTTGACTATAATGATTGGATACATAAGAACGGTCCTTTTTATCTAAACGATATTCTAGGTAAGCTGTTTATAAGTTCATTTTTGTGTACAAAATTAAATTCCGAAGCTTAACTTTTTGGAATGGTTTCAACGATTTGCAGTGTTCAAATACGATCCTCCCAACAGCTCAACTCCTCCTCATAATGTTTATTTGCTACCAAACATGCAAAGCTTGAACAAGTGTGATTTTAGAAGGGCTAAATTGGTGGCAAATTTAACACAAGGAAGTGGAAATGGGTTTAATTTTGTTCTTAAACAACAAAAAGCTTACTACTTTGCTTGTGCTGAAGGCAATGGCTTCCATTGCAACCTTGGATCCATGAAGTTCTCTATAACCCCACAATCAAGGCGTCTACCATCACCGCCACCACCATCACGACCGCCACGGATACCTCCACCACGACAT

mRNA sequence

ATGGCTTCCATATTTTCTAACGTTATCGTTCTCTTCGTGTTAGCGTGCATGTCAACTCTAAGCTCGGCCGACCCGGGTTGGTTTAGGGCTCGTAATACCACTTTTCCTTTCAGTTCTAGGCATAAACGTCCCCGGTTCTCGCCACCACCATCACGATGTTTGCCACAACCACCATCACGACCACGACAACCTCGAACACCACCACCATCACGACCACGACAACCTCGACCACCACCACCACCACGACGACGACGACGTTTGCCACCGTCCCCACCACCACCACGACGGCCTCGAATACCGCCATCACCATCATCGCCGACCCCACAAAATCCAAGAAAGATTATAGTGGGTGGTTCTAAGTATTGGCGTCTTGGGTTTGACTATAATGATTGGATACATAAGAACGGTCCTTTTTATCTAAACGATATTCTAGTGTTCAAATACGATCCTCCCAACAGCTCAACTCCTCCTCATAATGTTTATTTGCTACCAAACATGCAAAGCTTGAACAAGTGTGATTTTAGAAGGGCTAAATTGGTGGCAAATTTAACACAAGGAAGTGGAAATGGGTTTAATTTTGTTCTTAAACAACAAAAAGCTTACTACTTTGCTTGTGCTGAAGGCAATGGCTTCCATTGCAACCTTGGATCCATGAAGTTCTCTATAACCCCACAATCAAGGCGTCTACCATCACCGCCACCACCATCACGACCGCCACGGATACCTCCACCACGACAT

Coding sequence (CDS)

ATGGCTTCCATATTTTCTAACGTTATCGTTCTCTTCGTGTTAGCGTGCATGTCAACTCTAAGCTCGGCCGACCCGGGTTGGTTTAGGGCTCGTAATACCACTTTTCCTTTCAGTTCTAGGCATAAACGTCCCCGGTTCTCGCCACCACCATCACGATGTTTGCCACAACCACCATCACGACCACGACAACCTCGAACACCACCACCATCACGACCACGACAACCTCGACCACCACCACCACCACGACGACGACGACGTTTGCCACCGTCCCCACCACCACCACGACGGCCTCGAATACCGCCATCACCATCATCGCCGACCCCACAAAATCCAAGAAAGATTATAGTGGGTGGTTCTAAGTATTGGCGTCTTGGGTTTGACTATAATGATTGGATACATAAGAACGGTCCTTTTTATCTAAACGATATTCTAGTGTTCAAATACGATCCTCCCAACAGCTCAACTCCTCCTCATAATGTTTATTTGCTACCAAACATGCAAAGCTTGAACAAGTGTGATTTTAGAAGGGCTAAATTGGTGGCAAATTTAACACAAGGAAGTGGAAATGGGTTTAATTTTGTTCTTAAACAACAAAAAGCTTACTACTTTGCTTGTGCTGAAGGCAATGGCTTCCATTGCAACCTTGGATCCATGAAGTTCTCTATAACCCCACAATCAAGGCGTCTACCATCACCGCCACCACCATCACGACCGCCACGGATACCTCCACCACGACAT

Protein sequence

MASIFSNVIVLFVLACMSTLSSADPGWFRARNTTFPFSSRHKRPRFSPPPSRCLPQPPSRPRQPRTPPPSRPRQPRPPPPPRRRRRLPPSPPPPRRPRIPPSPSSPTPQNPRKIIVGGSKYWRLGFDYNDWIHKNGPFYLNDILVFKYDPPNSSTPPHNVYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFACAEGNGFHCNLGSMKFSITPQSRRLPSPPPPSRPPRIPPPRH

Homology

[Close]

BLAST of Carg22984 vs. NCBI nr
Match: KAG7023921.1 (hypothetical protein SDJN02_14949, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 481.9 bits (1239), Expect = 3.4e-132
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MASIFSNVIVLFVLACMSTLSSADPGWFRARNTTFPFSSRHKRPRFSPPPSRCLPQPPSR 60
           MASIFSNVIVLFVLACMSTLSSADPGWFRARNTTFPFSSRHKRPRFSPPPSRCLPQPPSR
Sbjct: 1   MASIFSNVIVLFVLACMSTLSSADPGWFRARNTTFPFSSRHKRPRFSPPPSRCLPQPPSR 60

Query: 61  PRQPRTPPPSRPRQPRPPPPPRRRRRLPPSPPPPRRPRIPPSPSSPTPQNPRKIIVGGSK 120
           PRQPRTPPPSRPRQPRPPPPPRRRRRLPPSPPPPRRPRIPPSPSSPTPQNPRKIIVGGSK
Sbjct: 61  PRQPRTPPPSRPRQPRPPPPPRRRRRLPPSPPPPRRPRIPPSPSSPTPQNPRKIIVGGSK 120

Query: 121 YWRLGFDYNDWIHKNGPFYLNDILVFKYDPPNSSTPPHNVYLLPNMQSLNKCDFRRAKLV 180
           YWRLGFDYNDWIHKNGPFYLNDILVFKYDPPNSSTPPHNVYLLPNMQSLNKCDFRRAKLV
Sbjct: 121 YWRLGFDYNDWIHKNGPFYLNDILVFKYDPPNSSTPPHNVYLLPNMQSLNKCDFRRAKLV 180

Query: 181 ANLTQGSGNGFNFVLKQQKAYYFACAEGNGFHCNLGSMKFSITPQSRRLPSPPPPSRPPR 240
           ANLTQGSGNGFNFVLKQQKAYYFACAEGNGFHCNLGSMKFSITPQSRRLPSPPPPSRPPR
Sbjct: 181 ANLTQGSGNGFNFVLKQQKAYYFACAEGNGFHCNLGSMKFSITPQSRRLPSPPPPSRPPR 240

Query: 241 IPPPRH 247
           IPPPRH
Sbjct: 241 IPPPRH 246

[Close]

BLAST of Carg22984 vs. NCBI nr
Match: KAG7035126.1 (hypothetical protein SDJN02_01921, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 481.9 bits (1239), Expect = 3.4e-132
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MASIFSNVIVLFVLACMSTLSSADPGWFRARNTTFPFSSRHKRPRFSPPPSRCLPQPPSR 60
           MASIFSNVIVLFVLACMSTLSSADPGWFRARNTTFPFSSRHKRPRFSPPPSRCLPQPPSR
Sbjct: 1   MASIFSNVIVLFVLACMSTLSSADPGWFRARNTTFPFSSRHKRPRFSPPPSRCLPQPPSR 60

Query: 61  PRQPRTPPPSRPRQPRPPPPPRRRRRLPPSPPPPRRPRIPPSPSSPTPQNPRKIIVGGSK 120
           PRQPRTPPPSRPRQPRPPPPPRRRRRLPPSPPPPRRPRIPPSPSSPTPQNPRKIIVGGSK
Sbjct: 61  PRQPRTPPPSRPRQPRPPPPPRRRRRLPPSPPPPRRPRIPPSPSSPTPQNPRKIIVGGSK 120

Query: 121 YWRLGFDYNDWIHKNGPFYLNDILVFKYDPPNSSTPPHNVYLLPNMQSLNKCDFRRAKLV 180
           YWRLGFDYNDWIHKNGPFYLNDILVFKYDPPNSSTPPHNVYLLPNMQSLNKCDFRRAKLV
Sbjct: 121 YWRLGFDYNDWIHKNGPFYLNDILVFKYDPPNSSTPPHNVYLLPNMQSLNKCDFRRAKLV 180

Query: 181 ANLTQGSGNGFNFVLKQQKAYYFACAEGNGFHCNLGSMKFSITPQSRRLPSPPPPSRPPR 240
           ANLTQGSGNGFNFVLKQQKAYYFACAEGNGFHCNLGSMKFSITPQSRRLPSPPPPSRPPR
Sbjct: 181 ANLTQGSGNGFNFVLKQQKAYYFACAEGNGFHCNLGSMKFSITPQSRRLPSPPPPSRPPR 240

Query: 241 IPPPRH 247
           IPPPRH
Sbjct: 241 IPPPRH 246

[Close]

BLAST of Carg22984 vs. NCBI nr
Match: KAG6605125.1 (hypothetical protein SDJN03_02442, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 433.7 bits (1114), Expect = 1.0e-117
Identity = 224/229 (97.82%), Postives = 224/229 (97.82%), Query Frame = 0


Query: 17  MSTLSSADPGWFRARNTTFPFSSRHKRPRFSPPPSRCLPQPPSRPRQPRTPPPSRPRQPR 76
           MSTLSSADPGWFRARNTTFPFSSRHKRPRFSPPPSRCLPQPPSRPRQPRTPPPSRPRQPR
Sbjct: 1   MSTLSSADPGWFRARNTTFPFSSRHKRPRFSPPPSRCLPQPPSRPRQPRTPPPSRPRQPR 60

Query: 77  PPPPPRRRRRLPPSPPPPRRPRIPPSPSSPTPQNPRKIIVGGSKYWRLGFDYNDWIHKNG 136
            PPPP   RRLPPSPPPPRRPRIPPSPSSPTPQNPRKIIVGGSKYWRLGFDYNDWIHKNG
Sbjct: 61  TPPPP-PPRRLPPSPPPPRRPRIPPSPSSPTPQNPRKIIVGGSKYWRLGFDYNDWIHKNG 120

Query: 137 PFYLNDILVFKYDPPNSSTPPHNVYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLK 196
           PFYLNDILVFKYDPPNSSTPPHNVYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLK
Sbjct: 121 PFYLNDILVFKYDPPNSSTPPHNVYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLK 180

Query: 197 QQKAYYFACAEGNGFHCNLGSMKFSITPQSRRLPSPPPPSRPPRIPPPR 246
           QQKAYYFACAEGNGFHCNLGSMKFSITPQSRRLPSPPPPSR PRIPPPR
Sbjct: 181 QQKAYYFACAEGNGFHCNLGSMKFSITPQSRRLPSPPPPSRRPRIPPPR 228

[Close]

BLAST of Carg22984 vs. NCBI nr
Match: XP_022947109.1 (extensin-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 411.8 bits (1057), Expect = 4.3e-111
Identity = 226/267 (84.64%), Postives = 229/267 (85.77%), Query Frame = 0


Query: 1   MASIFSNVIVLFVLACMSTLSSADPGWFRARNTTFPFSSRHKRPRFSPPPSRCLPQ---- 60
           MASIFSNVIVLFVLACMSTLSSADP WFRARNTTF FSSRHKRPRF PPPSRCLPQ    
Sbjct: 1   MASIFSNVIVLFVLACMSTLSSADPSWFRARNTTFLFSSRHKRPRFPPPPSRCLPQPPWR 60

Query: 61  ------PPSRPRQPRTPPPSRPRQPRPPP--------PPRRRRRLPPS---PPPPRRPRI 120
                 PPSRPRQPRTPPPSRP++PR PP        PP RR R PP    PP P RPR 
Sbjct: 61  CLPPSPPPSRPRQPRTPPPSRPQKPRTPPSRPRQPRTPPPRRPRTPPPRWFPPLPPRPRT 120

Query: 121 PPSPSSPTPQNPRKIIVGGSKYWRLGFDYNDWIHKNGPFYLNDILVFKYDPPNSSTPPHN 180
           PPS   PTPQNPRKIIVGGSKYWRLGFDYNDWI KNGPFY+NDILVFKYDPPNSSTPPHN
Sbjct: 121 PPSSPLPTPQNPRKIIVGGSKYWRLGFDYNDWILKNGPFYVNDILVFKYDPPNSSTPPHN 180

Query: 181 VYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFACAEGNGFHCNLGSMK 240
           VYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFAC EGNGFHCNLGSMK
Sbjct: 181 VYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFACGEGNGFHCNLGSMK 240

Query: 241 FSITPQSRRLPSPPPPSRPPRIPPPRH 247
           FSITPQSR LPSPPPPSRPPRIPPPRH
Sbjct: 241 FSITPQSRCLPSPPPPSRPPRIPPPRH 267

[Close]

BLAST of Carg22984 vs. NCBI nr
Match: XP_022947108.1 (extensin-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 411.8 bits (1057), Expect = 4.3e-111
Identity = 226/267 (84.64%), Postives = 229/267 (85.77%), Query Frame = 0


Query: 1   MASIFSNVIVLFVLACMSTLSSADPGWFRARNTTFPFSSRHKRPRFSPPPSRCLPQ---- 60
           MASIFSNVIVLFVLACMSTLSSADP WFRARNTTF FSSRHKRPRF PPPSRCLPQ    
Sbjct: 1   MASIFSNVIVLFVLACMSTLSSADPSWFRARNTTFLFSSRHKRPRFPPPPSRCLPQPPWR 60

Query: 61  ------PPSRPRQPRTPPPSRPRQPRPPP--------PPRRRRRLPPS---PPPPRRPRI 120
                 PPSRPRQPRTPPPSRP++PR PP        PP RR R PP    PP P RPR 
Sbjct: 61  CLPPSPPPSRPRQPRTPPPSRPQKPRTPPSRPRQPRTPPPRRPRTPPPRWFPPLPPRPRT 120

Query: 121 PPSPSSPTPQNPRKIIVGGSKYWRLGFDYNDWIHKNGPFYLNDILVFKYDPPNSSTPPHN 180
           PPS   PTPQNPRKIIVGGSKYWRLGFDYNDWI KNGPFY+NDILVFKYDPPNSSTPPHN
Sbjct: 121 PPSSPLPTPQNPRKIIVGGSKYWRLGFDYNDWILKNGPFYVNDILVFKYDPPNSSTPPHN 180

Query: 181 VYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFACAEGNGFHCNLGSMK 240
           VYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFAC EGNGFHCNLGSMK
Sbjct: 181 VYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFACGEGNGFHCNLGSMK 240

Query: 241 FSITPQSRRLPSPPPPSRPPRIPPPRH 247
           FSITPQSR LPSPPPPSRPPRIPPPRH
Sbjct: 241 FSITPQSRCLPSPPPPSRPPRIPPPRH 267

[Close]

BLAST of Carg22984 vs. ExPASy TrEMBL
Match: A0A6J1G5T9 (extensin-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111451078 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 2.1e-111
Identity = 226/267 (84.64%), Postives = 229/267 (85.77%), Query Frame = 0


Query: 1   MASIFSNVIVLFVLACMSTLSSADPGWFRARNTTFPFSSRHKRPRFSPPPSRCLPQ---- 60
           MASIFSNVIVLFVLACMSTLSSADP WFRARNTTF FSSRHKRPRF PPPSRCLPQ    
Sbjct: 1   MASIFSNVIVLFVLACMSTLSSADPSWFRARNTTFLFSSRHKRPRFPPPPSRCLPQPPWR 60

Query: 61  ------PPSRPRQPRTPPPSRPRQPRPPP--------PPRRRRRLPPS---PPPPRRPRI 120
                 PPSRPRQPRTPPPSRP++PR PP        PP RR R PP    PP P RPR 
Sbjct: 61  CLPPSPPPSRPRQPRTPPPSRPQKPRTPPSRPRQPRTPPPRRPRTPPPRWFPPLPPRPRT 120

Query: 121 PPSPSSPTPQNPRKIIVGGSKYWRLGFDYNDWIHKNGPFYLNDILVFKYDPPNSSTPPHN 180
           PPS   PTPQNPRKIIVGGSKYWRLGFDYNDWI KNGPFY+NDILVFKYDPPNSSTPPHN
Sbjct: 121 PPSSPLPTPQNPRKIIVGGSKYWRLGFDYNDWILKNGPFYVNDILVFKYDPPNSSTPPHN 180

Query: 181 VYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFACAEGNGFHCNLGSMK 240
           VYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFAC EGNGFHCNLGSMK
Sbjct: 181 VYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFACGEGNGFHCNLGSMK 240

Query: 241 FSITPQSRRLPSPPPPSRPPRIPPPRH 247
           FSITPQSR LPSPPPPSRPPRIPPPRH
Sbjct: 241 FSITPQSRCLPSPPPPSRPPRIPPPRH 267

[Close]

BLAST of Carg22984 vs. ExPASy TrEMBL
Match: A0A6J1G5W9 (extensin-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451078 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 2.1e-111
Identity = 226/267 (84.64%), Postives = 229/267 (85.77%), Query Frame = 0


Query: 1   MASIFSNVIVLFVLACMSTLSSADPGWFRARNTTFPFSSRHKRPRFSPPPSRCLPQ---- 60
           MASIFSNVIVLFVLACMSTLSSADP WFRARNTTF FSSRHKRPRF PPPSRCLPQ    
Sbjct: 1   MASIFSNVIVLFVLACMSTLSSADPSWFRARNTTFLFSSRHKRPRFPPPPSRCLPQPPWR 60

Query: 61  ------PPSRPRQPRTPPPSRPRQPRPPP--------PPRRRRRLPPS---PPPPRRPRI 120
                 PPSRPRQPRTPPPSRP++PR PP        PP RR R PP    PP P RPR 
Sbjct: 61  CLPPSPPPSRPRQPRTPPPSRPQKPRTPPSRPRQPRTPPPRRPRTPPPRWFPPLPPRPRT 120

Query: 121 PPSPSSPTPQNPRKIIVGGSKYWRLGFDYNDWIHKNGPFYLNDILVFKYDPPNSSTPPHN 180
           PPS   PTPQNPRKIIVGGSKYWRLGFDYNDWI KNGPFY+NDILVFKYDPPNSSTPPHN
Sbjct: 121 PPSSPLPTPQNPRKIIVGGSKYWRLGFDYNDWILKNGPFYVNDILVFKYDPPNSSTPPHN 180

Query: 181 VYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFACAEGNGFHCNLGSMK 240
           VYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFAC EGNGFHCNLGSMK
Sbjct: 181 VYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFACGEGNGFHCNLGSMK 240

Query: 241 FSITPQSRRLPSPPPPSRPPRIPPPRH 247
           FSITPQSR LPSPPPPSRPPRIPPPRH
Sbjct: 241 FSITPQSRCLPSPPPPSRPPRIPPPRH 267

[Close]

BLAST of Carg22984 vs. ExPASy TrEMBL
Match: A0A6J1G5G3 (extensin-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451078 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 2.1e-111
Identity = 226/267 (84.64%), Postives = 229/267 (85.77%), Query Frame = 0


Query: 1   MASIFSNVIVLFVLACMSTLSSADPGWFRARNTTFPFSSRHKRPRFSPPPSRCLPQ---- 60
           MASIFSNVIVLFVLACMSTLSSADP WFRARNTTF FSSRHKRPRF PPPSRCLPQ    
Sbjct: 1   MASIFSNVIVLFVLACMSTLSSADPSWFRARNTTFLFSSRHKRPRFPPPPSRCLPQPPWR 60

Query: 61  ------PPSRPRQPRTPPPSRPRQPRPPP--------PPRRRRRLPPS---PPPPRRPRI 120
                 PPSRPRQPRTPPPSRP++PR PP        PP RR R PP    PP P RPR 
Sbjct: 61  CLPPSPPPSRPRQPRTPPPSRPQKPRTPPSRPRQPRTPPPRRPRTPPPRWFPPLPPRPRT 120

Query: 121 PPSPSSPTPQNPRKIIVGGSKYWRLGFDYNDWIHKNGPFYLNDILVFKYDPPNSSTPPHN 180
           PPS   PTPQNPRKIIVGGSKYWRLGFDYNDWI KNGPFY+NDILVFKYDPPNSSTPPHN
Sbjct: 121 PPSSPLPTPQNPRKIIVGGSKYWRLGFDYNDWILKNGPFYVNDILVFKYDPPNSSTPPHN 180

Query: 181 VYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFACAEGNGFHCNLGSMK 240
           VYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFAC EGNGFHCNLGSMK
Sbjct: 181 VYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFACGEGNGFHCNLGSMK 240

Query: 241 FSITPQSRRLPSPPPPSRPPRIPPPRH 247
           FSITPQSR LPSPPPPSRPPRIPPPRH
Sbjct: 241 FSITPQSRCLPSPPPPSRPPRIPPPRH 267

[Close]

BLAST of Carg22984 vs. ExPASy TrEMBL
Match: A0A6J1G5Q0 (extensin-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111451078 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 2.1e-111
Identity = 226/267 (84.64%), Postives = 229/267 (85.77%), Query Frame = 0


Query: 1   MASIFSNVIVLFVLACMSTLSSADPGWFRARNTTFPFSSRHKRPRFSPPPSRCLPQ---- 60
           MASIFSNVIVLFVLACMSTLSSADP WFRARNTTF FSSRHKRPRF PPPSRCLPQ    
Sbjct: 1   MASIFSNVIVLFVLACMSTLSSADPSWFRARNTTFLFSSRHKRPRFPPPPSRCLPQPPWR 60

Query: 61  ------PPSRPRQPRTPPPSRPRQPRPPP--------PPRRRRRLPPS---PPPPRRPRI 120
                 PPSRPRQPRTPPPSRP++PR PP        PP RR R PP    PP P RPR 
Sbjct: 61  CLPPSPPPSRPRQPRTPPPSRPQKPRTPPSRPRQPRTPPPRRPRTPPPRWFPPLPPRPRT 120

Query: 121 PPSPSSPTPQNPRKIIVGGSKYWRLGFDYNDWIHKNGPFYLNDILVFKYDPPNSSTPPHN 180
           PPS   PTPQNPRKIIVGGSKYWRLGFDYNDWI KNGPFY+NDILVFKYDPPNSSTPPHN
Sbjct: 121 PPSSPLPTPQNPRKIIVGGSKYWRLGFDYNDWILKNGPFYVNDILVFKYDPPNSSTPPHN 180

Query: 181 VYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFACAEGNGFHCNLGSMK 240
           VYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFAC EGNGFHCNLGSMK
Sbjct: 181 VYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFACGEGNGFHCNLGSMK 240

Query: 241 FSITPQSRRLPSPPPPSRPPRIPPPRH 247
           FSITPQSR LPSPPPPSRPPRIPPPRH
Sbjct: 241 FSITPQSRCLPSPPPPSRPPRIPPPRH 267

[Close]

BLAST of Carg22984 vs. ExPASy TrEMBL
Match: A0A6J1L0M6 (extensin-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499957 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.4e-107
Identity = 221/265 (83.40%), Postives = 225/265 (84.91%), Query Frame = 0


Query: 1   MASIFSNVIVLFVLACMSTLSSADPGWFRARNTTFPFSSRHKRPRFSPPPSRCLPQ---- 60
           MASIFSNVIVL+VLACMSTLSSADPGWFRARNTTF FSSRHKRP F PP SRCLPQ    
Sbjct: 1   MASIFSNVIVLYVLACMSTLSSADPGWFRARNTTFLFSSRHKRPPFPPPSSRCLPQPPWR 60

Query: 61  ------PPSRPRQPRTP---------PPSRPRQPRPPPPPRRRRRLPPSPPPPRRPRIPP 120
                 PPS+PR+PRTP         PPSRPRQPR PPP    RRLPPSPPP RRPR PP
Sbjct: 61  RLPPSPPPSQPRKPRTPPSRPRQPRTPPSRPRQPRTPPP----RRLPPSPPPSRRPRTPP 120

Query: 121 SPSSPTPQNPRKIIVGGSKYWRLGFDYNDWIHKNGPFYLNDILVFKYDPPNSSTPPHNVY 180
               PTPQNPRKIIVGGSKYWRLGFDYNDWI KNGPFYLNDILVFKYD PNSSTPPHNVY
Sbjct: 121 ---LPTPQNPRKIIVGGSKYWRLGFDYNDWILKNGPFYLNDILVFKYDRPNSSTPPHNVY 180

Query: 181 LLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFACAEGNGFHCNLGSMKFS 240
           LLPNMQS NKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFAC EG GFHCN+GSMKFS
Sbjct: 181 LLPNMQSFNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFACGEGIGFHCNIGSMKFS 240

Query: 241 ITPQSRRLPSPPPPSRPPRIPPPRH 247
           ITPQSRRLPSP PPSRPPRIPPPRH
Sbjct: 241 ITPQSRRLPSPLPPSRPPRIPPPRH 258

[Close]

BLAST of Carg22984 vs. TAIR 10
Match: AT2G15780.1 (Cupredoxin superfamily protein )

HSP 1 Score: 148.3 bits (373), Expect = 8.2e-36
Identity = 68/122 (55.74%), Postives = 84/122 (68.85%), Query Frame = 0


Query: 107 TPQNPRKIIVGGSKYWRLGFDYNDWIHKNGPFYLNDILVFKYDPPNSSTPPHNVYLLPNM 166
           T   PRKIIVGG K W  GF+Y DW  K  PF+LNDILVFKY+PP   T  H+VYLLPN 
Sbjct: 137 TYNGPRKIIVGGDKEWTYGFNYADWASKTAPFFLNDILVFKYNPPAPFT--HSVYLLPNP 196

Query: 167 QSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFACAEGNGFHCNLGSMKFSITPQS 226
            S  KCD ++ K++A+  QG+G GF FVLKQ K YY +C E +G HC+ G+MKF++ P  
Sbjct: 197 SSYEKCDVKKGKMIASPKQGAGKGFEFVLKQMKPYYISCGEHDGAHCSNGTMKFTVMPML 256

Query: 227 RR 229
            R
Sbjct: 257 PR 256

[Close]

BLAST of Carg22984 vs. TAIR 10
Match: AT2G15770.1 (Cupredoxin superfamily protein )

HSP 1 Score: 116.3 bits (290), Expect = 3.4e-26
Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = 0


Query: 109 QNPRKIIVGGSKYWRLGFDYNDWIHKNGPFYLNDILVFKYDPPNSSTPPHNVYLLPNMQS 168
           + P+KIIVGGS  W+ G DY DW  KN PFY+ND+LVFKYD   S+   +NVYL  +  S
Sbjct: 141 ETPKKIIVGGSDGWKKGLDYKDWASKNAPFYVNDVLVFKYD--KSAKRRNNVYLFKDRWS 200

Query: 169 LNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFACAEGNGFHCNLGSMKFSITP 225
              CD + A+ + +  +GS   FNF LK+ + Y+FA  E +G +C   +MKF+I P
Sbjct: 201 YMNCDIKNARKIGSTRKGSEESFNFTLKKIQPYFFASGEHDGDYCRNHNMKFTIFP 254

[Close]

BLAST of Carg22984 vs. TAIR 10
Match: AT4G33930.1 (Cupredoxin superfamily protein )

HSP 1 Score: 83.6 bits (205), Expect = 2.5e-16
Identity = 51/132 (38.64%), Postives = 72/132 (54.55%), Query Frame = 0


Query: 104 SSPTPQNPRKIIVGGSKYWRLGFDYNDWIHKNGPFYLNDILVFKY---DPPNSSTPPHN- 163
           ++P P   RKI V     W+ G+ Y +W  K+ PFY++D+LVFKY   D   S T   N 
Sbjct: 215 TAPIPAG-RKIAV---TVWKNGYGYTEWTAKHAPFYVSDVLVFKYNNDDQTQSKTKHRNK 274

Query: 164 ----VYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFACAEGNGFHCNL 223
               VYLLP+M+S  +C+  R K +      S  GF  +L++ + YYFA  + N   CN 
Sbjct: 275 KKNDVYLLPDMKSFKRCNVARGKKLVARGGSSSRGFKLLLRKVQTYYFASGDHN--ECN- 334

Query: 224 GSMKFSITPQSR 228
            +MKFS+ P  R
Sbjct: 335 HNMKFSVHPIPR 339

[Close]

BLAST of Carg22984 vs. TAIR 10
Match: AT4G34300.1 (Cupredoxin superfamily protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-15
Identity = 48/126 (38.10%), Postives = 66/126 (52.38%), Query Frame = 0


Query: 108 PQNPRKIIVGGSKYWRLGFDYNDWIHKNGPFYLNDILVFKY---DPPNSSTPPH------ 167
           P   RKI V     W+ G+ Y +W  K+ PFY+ND+LVF Y   D   S T  H      
Sbjct: 187 PSLGRKIAV---TVWKNGYGYTEWTAKHAPFYVNDVLVFTYNNNDQTQSKTKHHHDKKKN 246

Query: 168 NVYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFACAEGNGFHCNLGSM 225
           +VYLLP+M+S  +C+  R K +      S  GF  +L++   YYF   + N   CN  +M
Sbjct: 247 DVYLLPDMKSFKRCNVARGKKLVARGGSSSRGFKLLLRKVHTYYFVSGDHN--DCN-HNM 306

The following BLAST results are available for this feature:

BLAST of Carg22984 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023921.1	3.4e-132	100.00	hypothetical protein SDJN02_14949, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7035126.1	3.4e-132	100.00	hypothetical protein SDJN02_01921, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6605125.1	1.0e-117	97.82	hypothetical protein SDJN03_02442, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022947109.1	4.3e-111	84.64	extensin-like isoform X4 [Cucurbita moschata]	[more]
XP_022947108.1	4.3e-111	84.64	extensin-like isoform X3 [Cucurbita moschata]	[more]

BLAST of Carg22984 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg22984 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G5T9	2.1e-111	84.64	extensin-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111451078 PE=4 SV=1	[more]
A0A6J1G5W9	2.1e-111	84.64	extensin-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451078 PE=4 SV=1	[more]
A0A6J1G5G3	2.1e-111	84.64	extensin-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451078 PE=4 SV=1	[more]
A0A6J1G5Q0	2.1e-111	84.64	extensin-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111451078 PE=4 SV=1	[more]
A0A6J1L0M6	1.4e-107	83.40	extensin-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499957 PE=4 SV=1	[more]

BLAST of Carg22984 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G15780.1	8.2e-36	55.74	Cupredoxin superfamily protein	[more]
AT2G15770.1	3.4e-26	46.55	Cupredoxin superfamily protein	[more]
AT4G33930.1	2.5e-16	38.64	Cupredoxin superfamily protein	[more]
AT4G34300.1	1.6e-15	38.10	Cupredoxin superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 112..231 e-value: 3.1E-20 score: 74.3
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 112..224
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..108
None	No IPR available	PANTHER	PTHR34052:SF1	GLYCINE-RICH PROTEIN-LIKE	coord: 2..228
None	No IPR available	PANTHER	PTHR34052	GLYCINE-RICH PROTEIN-LIKE	coord: 2..228
IPR003245	Phytocyanin domain	PROSITE	PS51485	PHYTOCYANIN	coord: 112..226 score: 23.364552

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22984-RA	Carg22984-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
molecular_function	GO:0009055	electron transfer activity