Carg22898 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22898
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	GOLD domain-containing protein
Location	Carg_Chr11: 5379874 .. 5380829 (+)
RNA-Seq Expression	Carg22898
Synteny	Carg22898

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAAGCAGTTGAAAGAGAATCAAGAACCACTAATCTCCGGCGAGTTTCTGGCGGTGGAATCGACGAGGACGACTTGTAATCCTTGTGATTTTCACTCAGCGAAGGCGGACAAGGAAGTGGAAACGGATCAGGAAAGTATAGGATCGTCGGAGGAAACAGAGTCGCCGAGATCAGTAACGAAGGTTGCGGACTGGAGGAAGAAATTGGCATATGTTCATTACCAGATTCGGAGAATCAGAGAGGAGGATTTGCATCTTGGTGAGGATATCGGCGAAGGCTTCAACGCGAAAGAGAAGATGAATTCGATTGGAGATTGGTGCGATGTTGGATATCAATGTAATCATCATCATCATCATCATAATCCTCCTCATTTTTATCATAACCGCGTTACTCCACAAATGAACGTTGTAATTTTCTCGCGGCCGATCTTGCCGAGCTCGCCACTCAGCGGGAAGAACACACTTAGGGCTTTAAATTAAGGTACACTAAAAATCAAGGTACTGTTTCTCAATCGGGCGGTATTTGTGTTTTCCATTTCGATTTCGAATCTGTGAAATTAATTGAATCTTTGAGAAAACTGAAGGTTTCAATTCTTGTGATTGAGTTAGGTTTTGCTCCTGATTTTTGCGATTGGTTAGACTGCGCAGAAAAGATTGGGAAATTTTGATCTCCGGCATACGCCAAATTTTCTGGCTGCTTAGTTTTTAGAGTTTGATTAAATTTGGAGGAAGAAATTAGAAGGATGAACAGTGATACAGAATCTGGAGATCAAAACCGCTACTGTAAAGTCTAATTTGAATGAAAAAGAAGAAGAAATGCATGAATTCTGAGATGTAAATAAATTTCTGTCTCTCTCTGTTTCTTTGATATTTTGAAACTACAATTATATATAATAGCAATTATTTTTTAAACCATTTAAAAATATGCAATTCTTCATGAGACCTAAATTTGT

mRNA sequence

ATGACGAAGCAGTTGAAAGAGAATCAAGAACCACTAATCTCCGGCGAGTTTCTGGCGGTGGAATCGACGAGGACGACTTGTAATCCTTGTGATTTTCACTCAGCGAAGGCGGACAAGGAAGTGGAAACGGATCAGGAAAGTATAGGATCGTCGGAGGAAACAGAGTCGCCGAGATCAGTAACGAAGGTTGCGGACTGGAGGAAGAAATTGGCATATGTTCATTACCAGATTCGGAGAATCAGAGAGGAGGATTTGCATCTTGGTGAGGATATCGGCGAAGGCTTCAACGCGAAAGAGAAGATGAATTCGATTGGAGATTGGTGCGATGTTGGATATCAATGTTTTGCTCCTGATTTTTGCGATTGGTTAGACTGCGCAGAAAAGATTGGGAAATTTTGATCTCCGGCATACGCCAAATTTTCTGGCTGCTTAGTTTTTAGAGTTTGATTAAATTTGGAGGAAGAAATTAGAAGGATGAACAGTGATACAGAATCTGGAGATCAAAACCGCTACTGTAAAGTCTAATTTGAATGAAAAAGAAGAAGAAATGCATGAATTCTGAGATGTAAATAAATTTCTGTCTCTCTCTGTTTCTTTGATATTTTGAAACTACAATTATATATAATAGCAATTATTTTTTAAACCATTTAAAAATATGCAATTCTTCATGAGACCTAAATTTGT

Coding sequence (CDS)

ATGACGAAGCAGTTGAAAGAGAATCAAGAACCACTAATCTCCGGCGAGTTTCTGGCGGTGGAATCGACGAGGACGACTTGTAATCCTTGTGATTTTCACTCAGCGAAGGCGGACAAGGAAGTGGAAACGGATCAGGAAAGTATAGGATCGTCGGAGGAAACAGAGTCGCCGAGATCAGTAACGAAGGTTGCGGACTGGAGGAAGAAATTGGCATATGTTCATTACCAGATTCGGAGAATCAGAGAGGAGGATTTGCATCTTGGTGAGGATATCGGCGAAGGCTTCAACGCGAAAGAGAAGATGAATTCGATTGGAGATTGGTGCGATGTTGGATATCAATGTTTTGCTCCTGATTTTTGCGATTGGTTAGACTGCGCAGAAAAGATTGGGAAATTTTGA

Protein sequence

MTKQLKENQEPLISGEFLAVESTRTTCNPCDFHSAKADKEVETDQESIGSSEETESPRSVTKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMNSIGDWCDVGYQCFAPDFCDWLDCAEKIGKF

Homology

[Close]

BLAST of Carg22898 vs. NCBI nr
Match: KAG7022225.1 (hypothetical protein SDJN02_15955, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278.5 bits (711), Expect = 3.0e-71
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MTKQLKENQEPLISGEFLAVESTRTTCNPCDFHSAKADKEVETDQESIGSSEETESPRSV 60
           MTKQLKENQEPLISGEFLAVESTRTTCNPCDFHSAKADKEVETDQESIGSSEETESPRSV
Sbjct: 1   MTKQLKENQEPLISGEFLAVESTRTTCNPCDFHSAKADKEVETDQESIGSSEETESPRSV 60

Query: 61  TKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMNSIGDWCDVGYQCFAPDFC 120
           TKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMNSIGDWCDVGYQCFAPDFC
Sbjct: 61  TKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMNSIGDWCDVGYQCFAPDFC 120

Query: 121 DWLDCAEKIGKF 133
           DWLDCAEKIGKF
Sbjct: 121 DWLDCAEKIGKF 132

[Close]

BLAST of Carg22898 vs. NCBI nr
Match: KAG6588377.1 (hypothetical protein SDJN03_16942, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 255.0 bits (650), Expect = 3.6e-64
Identity = 126/132 (95.45%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MTKQLKENQEPLISGEFLAVESTRTTCNPCDFHSAKADKEVETDQESIGSSEETESPRSV 60
           MTKQLKENQEPLISGEFLAVESTRTTCNPCDFHSAKADKEVETDQESIGSSEETESPRSV
Sbjct: 1   MTKQLKENQEPLISGEFLAVESTRTTCNPCDFHSAKADKEVETDQESIGSSEETESPRSV 60

Query: 61  TKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMNSIGDWCDVGYQCFAPDFC 120
           TKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMNSIGDW     Q FAPDFC
Sbjct: 61  TKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMNSIGDWYTKN-QGFAPDFC 120

Query: 121 DWLDCAEKIGKF 133
           DWLDCAEKIGKF
Sbjct: 121 DWLDCAEKIGKF 131

[Close]

BLAST of Carg22898 vs. NCBI nr
Match: XP_022934173.1 (uncharacterized protein LOC111441419 [Cucurbita moschata])

HSP 1 Score: 188.7 bits (478), Expect = 3.1e-44
Identity = 96/116 (82.76%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 1   MTKQLKENQEPLISG----EF--LAVESTRTTCNPCDFHSAKADKEVETDQESIGSSEET 60
           MTKQLKENQEP ISG    EF   A ES R+ CNPCDFHS+K  KE ETDQESIGSSEET
Sbjct: 1   MTKQLKENQEPFISGTGEDEFPAAAPESMRSICNPCDFHSSKTCKEEETDQESIGSSEET 60

Query: 61  ESPRSVTKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMNSIGDWCDV 111
           ESP+SV KVADWRKK+AYVHYQIRRIREEDLHLGEDIGEGFNAKEK+NSIGDWCDV
Sbjct: 61  ESPKSVAKVADWRKKMAYVHYQIRRIREEDLHLGEDIGEGFNAKEKINSIGDWCDV 116

[Close]

BLAST of Carg22898 vs. NCBI nr
Match: KAG6580973.1 (hypothetical protein SDJN03_20975, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188.3 bits (477), Expect = 4.1e-44
Identity = 95/119 (79.83%), Postives = 102/119 (85.71%), Query Frame = 0


Query: 1   MTKQLKENQEPLISG----EF--LAVESTRTTCNPCDFHSAKADKEVETDQESIGSSEET 60
           MTKQLKENQEP ISG    EF   A ES R+ CNPCDFHS+K  KE ETDQESIGSSEET
Sbjct: 1   MTKQLKENQEPFISGTGEDEFPAAAPESMRSICNPCDFHSSKTCKEEETDQESIGSSEET 60

Query: 61  ESPRSVTKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMNSIGDWCDVGYQ 114
           ESP+SV K+ADWRKK+AYVHYQIRRIREEDLHLGEDIGEGFNAKEK+NSIGDWCD+  Q
Sbjct: 61  ESPKSVAKIADWRKKMAYVHYQIRRIREEDLHLGEDIGEGFNAKEKINSIGDWCDLAAQ 119

[Close]

BLAST of Carg22898 vs. NCBI nr
Match: KAG7017711.1 (hypothetical protein SDJN02_19577, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.3 bits (477), Expect = 4.1e-44
Identity = 95/116 (81.90%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 1   MTKQLKENQEPLISG----EF--LAVESTRTTCNPCDFHSAKADKEVETDQESIGSSEET 60
           MTKQLKENQEP ISG    EF   A ES R+ CNPCDFHS+K  KE ETDQESIGSSEET
Sbjct: 1   MTKQLKENQEPFISGTGEDEFPAAAPESMRSICNPCDFHSSKTCKEEETDQESIGSSEET 60

Query: 61  ESPRSVTKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMNSIGDWCDV 111
           ESP+SV K+ADWRKK+AYVHYQIRRIREEDLHLGEDIGEGFNAKEK+NSIGDWCDV
Sbjct: 61  ESPKSVAKIADWRKKMAYVHYQIRRIREEDLHLGEDIGEGFNAKEKINSIGDWCDV 116

[Close]

BLAST of Carg22898 vs. ExPASy TrEMBL
Match: A0A6J1F6X8 (uncharacterized protein LOC111441419 OS=Cucurbita moschata OX=3662 GN=LOC111441419 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.5e-44
Identity = 96/116 (82.76%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 1   MTKQLKENQEPLISG----EF--LAVESTRTTCNPCDFHSAKADKEVETDQESIGSSEET 60
           MTKQLKENQEP ISG    EF   A ES R+ CNPCDFHS+K  KE ETDQESIGSSEET
Sbjct: 1   MTKQLKENQEPFISGTGEDEFPAAAPESMRSICNPCDFHSSKTCKEEETDQESIGSSEET 60

Query: 61  ESPRSVTKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMNSIGDWCDV 111
           ESP+SV KVADWRKK+AYVHYQIRRIREEDLHLGEDIGEGFNAKEK+NSIGDWCDV
Sbjct: 61  ESPKSVAKVADWRKKMAYVHYQIRRIREEDLHLGEDIGEGFNAKEKINSIGDWCDV 116

[Close]

BLAST of Carg22898 vs. ExPASy TrEMBL
Match: A0A0A0LFA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G827220 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 7.6e-44
Identity = 96/115 (83.48%), Postives = 102/115 (88.70%), Query Frame = 0


Query: 1   MTKQLKENQEPLIS-GEFLAV---ESTRTTCNPCDFHSAKADKEVETDQESIGSSEETES 60
           MTKQLKENQEPLIS G+F A    ES R+ CNPCDFH+ K  KEVETDQESIGSSEETES
Sbjct: 23  MTKQLKENQEPLISGGDFSAAEPEESMRSICNPCDFHTPKTYKEVETDQESIGSSEETES 82

Query: 61  PRSVTKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMNSI-GDWCDV 111
           P+SV KVADWRKKLAYVHYQ+RRIREEDLHLGEDIGEGFNAKEK+NSI GDWCDV
Sbjct: 83  PKSVAKVADWRKKLAYVHYQVRRIREEDLHLGEDIGEGFNAKEKINSIGGDWCDV 137

[Close]

BLAST of Carg22898 vs. ExPASy TrEMBL
Match: A0A5D3DPQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G008140 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 9.9e-44
Identity = 96/115 (83.48%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MTKQLKENQEPLIS-GEFLAV---ESTRTTCNPCDFHSAKADKEVETDQESIGSSEETES 60
           MTKQLKENQEPL+S GEF A    ES R  CNPCDFH+ K  KEVETDQESIGSSEETES
Sbjct: 1   MTKQLKENQEPLVSGGEFPATEAEESMRLICNPCDFHTPKTYKEVETDQESIGSSEETES 60

Query: 61  PRSVTKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMNSI-GDWCDV 111
           P+SV KVADWRKKLAYVHYQ+RRIREEDLHLGEDIGEGFNAKEK+NSI GDWCDV
Sbjct: 61  PKSVAKVADWRKKLAYVHYQVRRIREEDLHLGEDIGEGFNAKEKINSIGGDWCDV 115

[Close]

BLAST of Carg22898 vs. ExPASy TrEMBL
Match: A0A1S3B7Y8 (uncharacterized protein LOC103487011 OS=Cucumis melo OX=3656 GN=LOC103487011 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 9.9e-44
Identity = 96/115 (83.48%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MTKQLKENQEPLIS-GEFLAV---ESTRTTCNPCDFHSAKADKEVETDQESIGSSEETES 60
           MTKQLKENQEPL+S GEF A    ES R  CNPCDFH+ K  KEVETDQESIGSSEETES
Sbjct: 1   MTKQLKENQEPLVSGGEFPATEAEESMRLICNPCDFHTPKTYKEVETDQESIGSSEETES 60

Query: 61  PRSVTKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMNSI-GDWCDV 111
           P+SV KVADWRKKLAYVHYQ+RRIREEDLHLGEDIGEGFNAKEK+NSI GDWCDV
Sbjct: 61  PKSVAKVADWRKKLAYVHYQVRRIREEDLHLGEDIGEGFNAKEKINSIGGDWCDV 115

[Close]

BLAST of Carg22898 vs. ExPASy TrEMBL
Match: A0A7J7FYU6 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_029700 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.9e-15
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 38  DKEVETDQESIGSSEETESPRSVTKVADWR-KKLAYVHYQIRRIREEDLHLGEDIGEGFN 97
           D EVETDQESIGSSEE ESPRSV+K+  W  KK+ +VH QI RIREEDLH+GEDIGEG +
Sbjct: 50  DAEVETDQESIGSSEEIESPRSVSKLGQWTPKKVFHVHSQILRIREEDLHIGEDIGEGLS 109

Query: 98  AKEKMN 103
           AK+K++
Sbjct: 110 AKDKIS 115

The following BLAST results are available for this feature:

BLAST of Carg22898 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022225.1	3.0e-71	100.00	hypothetical protein SDJN02_15955, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6588377.1	3.6e-64	95.45	hypothetical protein SDJN03_16942, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022934173.1	3.1e-44	82.76	uncharacterized protein LOC111441419 [Cucurbita moschata]	[more]
KAG6580973.1	4.1e-44	79.83	hypothetical protein SDJN03_20975, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7017711.1	4.1e-44	81.90	hypothetical protein SDJN02_19577, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg22898 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg22898 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F6X8	1.5e-44	82.76	uncharacterized protein LOC111441419 OS=Cucurbita moschata OX=3662 GN=LOC1114414...	[more]
A0A0A0LFA4	7.6e-44	83.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G827220 PE=4 SV=1	[more]
A0A5D3DPQ0	9.9e-44	83.48	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B7Y8	9.9e-44	83.48	uncharacterized protein LOC103487011 OS=Cucumis melo OX=3656 GN=LOC103487011 PE=...	[more]
A0A7J7FYU6	1.9e-15	71.21	Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_029700 PE=4 SV=1	[more]

BLAST of Carg22898 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22898-RA	Carg22898-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane