Carg22878 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22878
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein PARTING DANCERS
Location	Carg_Chr15: 228305 .. 230585 (+)
RNA-Seq Expression	Carg22878
Synteny	Carg22878

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGTTTGTCACAGAGACATGTTAATCAAATGGATGGAAATCAAGTGAAACCAAAAAATTCTGGTACTCTGTTCTTAACTATCTTATTGATTTAAACTGTGTGTTATTTACTAGAAAGCCGTATATTCTTGATCGGATGCAAATGCAGGACTCATGAATTCATTTTAGGTCACAAGATTATGTTAGTATTTCATAGGGTAGAAAGCAATGTAGAATTCTCCTGATTGATTGCTTTAGGCACGGGGATGCGATATCTATTCTTTGTTCGTTTATAGTTTCCGCAAATAAAATGATTTCAAACGCGGAAAATTATAGTTGTCTGTGCTGATTACTTCCGGGTGAACAAAGATCTATCTCCTCCGAAATGTAAATTGTCTGTGCTTTAAGAACTCCCTAGGAAAATTGTTAGTTAGCGTCTACTGTCTTGACGTTAGTATTGTTCTTGATCCGTCTAGCATTATCATAAGAACACTCGTGATTTAATGCATTTCTTTACGAGACATTTGATAATTTTCTGGGAGCCGTAACTTCACATGTTCGAGTTTTTGAATCTTATGCCACCACATATAATATGTTTTGAGTGTGCTATCCAATGTTAGATCTTGCGTCCCACCTTTTTTTTTTCCTTCCTTTTTCTATTTAATTTTTTTTTTAATTGGCTAATAATTTAAAAGAAGATCCTCATGATAATTGAAAAACCCGAATAGTGGTTCTCTAAAAGTGGACGTGGTGTTGTCATGATCAAATTTCTCTATGCGCGAAATGAGGTTATACTTGTAGAACATGTTAACAAAAATCTTGTATGTACATTTTTCAAAATGTCTGAGCACGCACGAGAATGGTGCATTGGAGTAATCTGTTTGTTTCACAAGTGCAGGCGGTGGAGTCTGTTTGATGAGCAATATATGGAGAGATGAGCAGCATCCATCCACCATCAATTTTATGTCTAATTTCCTAAGCGCAAATTCATTTCGCCTCAATTTTGTTCCAATCGCTCCAGTAATTTTCTTTACATTCTCGGTATGTAAATTTCATTGGCAACCGTTCTGTACTCATAGCAATCACTTATAGGACTTGATATTCAATTGTGGGGGTTTATCAGTGGCTTTTGCTTTTGTGACAAGTTGGGATTGCAGCAATACGTCATCAATCTTTTGCAGGTAGCTTTGTTGTTGTTGTTGTTTATTTATTTATTTATTTTTGCTGGTTTTGCCTTTTGTTGTGTTTGATTCAGTCTGATTTTGACAGAGTTCAGAAGTTGATGAAGCAGTTTGCAAATTTCTATGTTGTTGTTGCCCTTCCAACCAAGGAGCAGAATGATTCATTTGTTCAATCTTACTTCAGGTAACCATAGTCTGGCACTTATGGTTCCTTGCTGTATTTTAATTTTGTTTTTCGAGAACTTACGTGCCTTTCTTTCCCTACAAATCTCGTGGAGAAATGGGATGGAAATTGGTAAGCCACCATTTGTACCAGTTCAGGATGTTGAGATGGGCTTTGAGAAGATTGTGAAGATAGCACACTCCCGTGGAGGTAATAACCATTTTTAATCTGGGCCGAATACTTTTCTTAATCATCTTCAATAATTATATCAAATTACAGCATGCAAGCAGCAAGATGTCATGTCAAAACTGAGGACTGAGGTCAGTTGGTGTAGATATATTCTACTTGAATTAGTAATGACAATTTAACCTCTGGTGGTCGTATAATGTCTTTTTTACACTGTTTTAATCACCTTCTCCCCCTTTTGGGGCTCTTGTTGAAGAGGAAGAGAACCGTGCAAGTCATGGATGCTTTTCGTAGAGTAATGTCTTCTGTACCAGGCCTTGATGATCATGATGCGAATTCGGTAAGCTTACTTGAACAAAACCAGCTCACACTCTTCATTGTGTGGCGTAGTTTTCTTGTTTGTTCCATTTCTCGTTCTATGTATCTCTGATATAGCCTAGAAACCATTCACTCTCGAGTTATTGACCACCAAAGTAAAGGCGATTGTTGCATGCGTCTTTCACTTGTATGTGATACTGATCTTGAGACGACTGAAAAAAGAAATTTATTGATGGAAATATGAAGTACTCTCTGGTTGTAAGGGTTTTATTTGAGCATTCTTATGTGGCTACTCTTCAGCTAAATCAAGCTATTGGTTCAATCGAGGCAATCGCGAAAGCATCCAAGGAGTGCATTTTGGAGAACACAGATCTGTCAGTGGACAAGGCAGAGAGAATTAGGAGCTTTTTCAGGGATCCAAAGTTCTACCTCAGTCCCAAAATAAATTGA

mRNA sequence

ATGGGGAGTTTGTCACAGAGACATGTTAATCAAATGGATGGAAATCAAGTGAAACCAAAAAATTCTGGCGGTGGAGTCTGTTTGATGAGCAATATATGGAGAGATGAGCAGCATCCATCCACCATCAATTTTATGTCTAATTTCCTAAGCGCAAATTCATTTCGCCTCAATTTTGTTCCAATCGCTCCAGTAATTTTCTTTACATTCTCGGACTTGATATTCAATTGTGGGGGTTTATCAGTGGCTTTTGCTTTTGTGACAAGTTGGGATTGCAGCAATACGTCATCAATCTTTTGCAGAGTTCAGAAGTTGATGAAGCAGTTTGCAAATTTCTATGTTGTTGTTGCCCTTCCAACCAAGGAGCAGAATGATTCATTTGTTCAATCTTACTTCAGAAATGGGATGGAAATTGGTAAGCCACCATTTGTACCAGTTCAGGATGTTGAGATGGGCTTTGAGAAGATTGTGAAGATAGCACACTCCCGTGGAGCATGCAAGCAGCAAGATGTCATGTCAAAACTGAGGACTGAGAGGAAGAGAACCGTGCAAGTCATGGATGCTTTTCGTAGAGTAATGTCTTCTGTACCAGGCCTTGATGATCATGATGCGAATTCGCTAAATCAAGCTATTGGTTCAATCGAGGCAATCGCGAAAGCATCCAAGGAGTGCATTTTGGAGAACACAGATCTGTCAGTGGACAAGGCAGAGAGAATTAGGAGCTTTTTCAGGGATCCAAAGTTCTACCTCAGTCCCAAAATAAATTGA

Coding sequence (CDS)

ATGGGGAGTTTGTCACAGAGACATGTTAATCAAATGGATGGAAATCAAGTGAAACCAAAAAATTCTGGCGGTGGAGTCTGTTTGATGAGCAATATATGGAGAGATGAGCAGCATCCATCCACCATCAATTTTATGTCTAATTTCCTAAGCGCAAATTCATTTCGCCTCAATTTTGTTCCAATCGCTCCAGTAATTTTCTTTACATTCTCGGACTTGATATTCAATTGTGGGGGTTTATCAGTGGCTTTTGCTTTTGTGACAAGTTGGGATTGCAGCAATACGTCATCAATCTTTTGCAGAGTTCAGAAGTTGATGAAGCAGTTTGCAAATTTCTATGTTGTTGTTGCCCTTCCAACCAAGGAGCAGAATGATTCATTTGTTCAATCTTACTTCAGAAATGGGATGGAAATTGGTAAGCCACCATTTGTACCAGTTCAGGATGTTGAGATGGGCTTTGAGAAGATTGTGAAGATAGCACACTCCCGTGGAGCATGCAAGCAGCAAGATGTCATGTCAAAACTGAGGACTGAGAGGAAGAGAACCGTGCAAGTCATGGATGCTTTTCGTAGAGTAATGTCTTCTGTACCAGGCCTTGATGATCATGATGCGAATTCGCTAAATCAAGCTATTGGTTCAATCGAGGCAATCGCGAAAGCATCCAAGGAGTGCATTTTGGAGAACACAGATCTGTCAGTGGACAAGGCAGAGAGAATTAGGAGCTTTTTCAGGGATCCAAAGTTCTACCTCAGTCCCAAAATAAATTGA

Protein sequence

MGSLSQRHVNQMDGNQVKPKNSGGGVCLMSNIWRDEQHPSTINFMSNFLSANSFRLNFVPIAPVIFFTFSDLIFNCGGLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTKEQNDSFVQSYFRNGMEIGKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKRTVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKECILENTDLSVDKAERIRSFFRDPKFYLSPKIN

Homology

[Close]

BLAST of Carg22878 vs. NCBI nr
Match: KAG7015892.1 (Protein PARTING DANCERS, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 510.4 bits (1313), Expect = 9.1e-141
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0


Query: 1   MGSLSQRHVNQMDGNQVKPKNSGGGVCLMSNIWRDEQHPSTINFMSNFLSANSFRLNFVP 60
           MGSLSQRHVNQMDGNQVKPKNSGGGVCLMSNIWRDEQHPSTINFMSNFLSANSFRLNFVP
Sbjct: 1   MGSLSQRHVNQMDGNQVKPKNSGGGVCLMSNIWRDEQHPSTINFMSNFLSANSFRLNFVP 60

Query: 61  IAPVIFFTFSDLIFNCGGLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTK 120
           IAPVIFFTFSDLIFNCGGLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTK
Sbjct: 61  IAPVIFFTFSDLIFNCGGLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTK 120

Query: 121 EQNDSFVQSYFRNGMEIGKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR 180
           EQNDSFVQSYFRNGMEIGKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR
Sbjct: 121 EQNDSFVQSYFRNGMEIGKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR 180

Query: 181 TVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKECILENTDLSVDKAERIRS 240
           TVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKECILENTDLSVDKAERIRS
Sbjct: 181 TVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKECILENTDLSVDKAERIRS 240

Query: 241 FFRDPKFYLSPKIN 255
           FFRDPKFYLSPKIN
Sbjct: 241 FFRDPKFYLSPKIN 254

[Close]

BLAST of Carg22878 vs. NCBI nr
Match: XP_022938483.1 (protein PARTING DANCERS [Cucurbita moschata])

HSP 1 Score: 486.9 bits (1252), Expect = 1.1e-133
Identity = 245/254 (96.46%), Postives = 246/254 (96.85%), Query Frame = 0


Query: 1   MGSLSQRHVNQMDGNQVKPKNSGGGVCLMSNIWRDEQHPSTINFMSNFLSANSFRLNFVP 60
           MGSLSQRHVNQMDGNQVK KNSGGGVCLMSNIWRDEQHPSTINFMSNFLSANSFRLNFVP
Sbjct: 1   MGSLSQRHVNQMDGNQVKAKNSGGGVCLMSNIWRDEQHPSTINFMSNFLSANSFRLNFVP 60

Query: 61  IAPVIFFTFSDLIFNCGGLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTK 120
           IAP       DLIFNCGGLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTK
Sbjct: 61  IAP-------DLIFNCGGLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTK 120

Query: 121 EQNDSFVQSYFRNGMEIGKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR 180
           EQNDSFVQSYFRNGMEIGKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR
Sbjct: 121 EQNDSFVQSYFRNGMEIGKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR 180

Query: 181 TVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKECILENTDLSVDKAERIRS 240
           +VQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKECILENTDLSVDKAERIRS
Sbjct: 181 SVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKECILENTDLSVDKAERIRS 240

Query: 241 FFRDPKFYLSPKIN 255
           FFRDPKFYLSPKIN
Sbjct: 241 FFRDPKFYLSPKIN 247

[Close]

BLAST of Carg22878 vs. NCBI nr
Match: XP_022992780.1 (protein PARTING DANCERS [Cucurbita maxima])

HSP 1 Score: 477.6 bits (1228), Expect = 6.5e-131
Identity = 242/254 (95.28%), Postives = 243/254 (95.67%), Query Frame = 0


Query: 1   MGSLSQRHVNQMDGNQVKPKNSGGGVCLMSNIWRDEQHPSTINFMSNFLSANSFRLNFVP 60
           MGSLSQR VNQMDGNQVK KNSGGGVCLMSNIWRDEQHPSTINFMSNFLS NSFRLNFVP
Sbjct: 1   MGSLSQRDVNQMDGNQVKAKNSGGGVCLMSNIWRDEQHPSTINFMSNFLSTNSFRLNFVP 60

Query: 61  IAPVIFFTFSDLIFNCGGLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTK 120
           IAP       DLIFNCGGLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTK
Sbjct: 61  IAP-------DLIFNCGGLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTK 120

Query: 121 EQNDSFVQSYFRNGMEIGKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR 180
           EQNDSFVQSYFRNGMEIGKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR
Sbjct: 121 EQNDSFVQSYFRNGMEIGKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR 180

Query: 181 TVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKECILENTDLSVDKAERIRS 240
           +VQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKE ILENTDLSVDKAERIRS
Sbjct: 181 SVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKEYILENTDLSVDKAERIRS 240

Query: 241 FFRDPKFYLSPKIN 255
           FFRDPKFYLSPKIN
Sbjct: 241 FFRDPKFYLSPKIN 247

[Close]

BLAST of Carg22878 vs. NCBI nr
Match: XP_022152444.1 (protein PARTING DANCERS isoform X1 [Momordica charantia])

HSP 1 Score: 440.3 bits (1131), Expect = 1.2e-119
Identity = 221/254 (87.01%), Postives = 232/254 (91.34%), Query Frame = 0


Query: 1   MGSLSQRHVNQMDGNQVKPKNSGGGVCLMSNIWRDEQHPSTINFMSNFLSANSFRLNFVP 60
           M +LSQ   N+M GNQVK KNS GGVCLMSN+WRDEQHPS INFMSNFLS NSFRLNFVP
Sbjct: 1   MANLSQSDANRMAGNQVKAKNSDGGVCLMSNVWRDEQHPSFINFMSNFLSTNSFRLNFVP 60

Query: 61  IAPVIFFTFSDLIFNCGGLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTK 120
           IAP       DLIFNCGGLSVAFAFVTSWDCSNTSSIF RVQKL KQFANFY VVALPTK
Sbjct: 61  IAP-------DLIFNCGGLSVAFAFVTSWDCSNTSSIFSRVQKLKKQFANFYAVVALPTK 120

Query: 121 EQNDSFVQSYFRNGMEIGKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR 180
           EQNDSFV+SYFRNGMEIGKPPF+PVQD+EMGFEKIVKIAHSRGACKQQDVMSKLRTERKR
Sbjct: 121 EQNDSFVKSYFRNGMEIGKPPFLPVQDIEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR 180

Query: 181 TVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKECILENTDLSVDKAERIRS 240
           +VQ MDAFRRV++SVPG+DDHDANSLNQAIGSIEAIAKASKE ILENTDLS DKAERIR+
Sbjct: 181 SVQDMDAFRRVITSVPGIDDHDANSLNQAIGSIEAIAKASKEYILENTDLSADKAERIRA 240

Query: 241 FFRDPKFYLSPKIN 255
           FFRDPKFYLSPKIN
Sbjct: 241 FFRDPKFYLSPKIN 247

[Close]

BLAST of Carg22878 vs. NCBI nr
Match: XP_038884563.1 (protein PARTING DANCERS isoform X1 [Benincasa hispida] >XP_038884564.1 protein PARTING DANCERS isoform X1 [Benincasa hispida] >XP_038884565.1 protein PARTING DANCERS isoform X1 [Benincasa hispida])

HSP 1 Score: 438.3 bits (1126), Expect = 4.4e-119
Identity = 221/254 (87.01%), Postives = 230/254 (90.55%), Query Frame = 0


Query: 1   MGSLSQRHVNQMDGNQVKPKNSGGGVCLMSNIWRDEQHPSTINFMSNFLSANSFRLNFVP 60
           M + SQR  NQMDGN+VK KNSGGGVCLMSN+WRDEQHPS INFMSNFL  NSFRLNFVP
Sbjct: 1   MENSSQRDANQMDGNRVKAKNSGGGVCLMSNVWRDEQHPSFINFMSNFLCTNSFRLNFVP 60

Query: 61  IAPVIFFTFSDLIFNCGGLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTK 120
           I P       DLIFNCGGLSVAFAF+TSWDCSNTS I+ RVQKL KQFANFYVVV LPTK
Sbjct: 61  IVP-------DLIFNCGGLSVAFAFLTSWDCSNTSPIYSRVQKLKKQFANFYVVVVLPTK 120

Query: 121 EQNDSFVQSYFRNGMEIGKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR 180
           EQNDSFVQSYFRNGMEIGKPPFV VQD+EMGFEKIVKIAHSRGACKQQDV+ KLRTERKR
Sbjct: 121 EQNDSFVQSYFRNGMEIGKPPFVAVQDIEMGFEKIVKIAHSRGACKQQDVILKLRTERKR 180

Query: 181 TVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKECILENTDLSVDKAERIRS 240
           +VQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKE ILENTDLSV+KAERIRS
Sbjct: 181 SVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAERIRS 240

Query: 241 FFRDPKFYLSPKIN 255
           FFRDPK YLSPKIN
Sbjct: 241 FFRDPKLYLSPKIN 247

[Close]

BLAST of Carg22878 vs. ExPASy Swiss-Prot
Match: F4IDW9 (Protein PARTING DANCERS OS=Arabidopsis thaliana OX=3702 GN=PTD PE=1 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 4.2e-80
Identity = 153/230 (66.52%), Postives = 177/230 (76.96%), Query Frame = 0


Query: 25  GVCLMSNIWRDEQHPSTINFMSNFLSANSFRLNFVPIAPVIFFTFSDLIFNCGGLSVAFA 84
           GVC+MSN W+ EQ PS INF+S FLSANSFRLNFV I P       DLIFNCGG+S+AF 
Sbjct: 28  GVCIMSNAWKVEQEPSLINFISAFLSANSFRLNFVSIPP-------DLIFNCGGVSIAFV 87

Query: 85  FVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTKEQNDSFVQSYFRNGMEIGKPPFVP 144
           FVT WD SN +SIF RV++L  QFA  YVV  L TKEQ+DSF++SYF+  ME GKP FV 
Sbjct: 88  FVTKWDFSNVASIFSRVKRLKGQFAQLYVVATLSTKEQSDSFMRSYFQYEMEFGKPAFVQ 147

Query: 145 VQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKRTVQVMDAFRRVMSSVPGLDDHDAN 204
           V D EMGFEKIVKIAHSRG CKQQ V SKL+ ERKRTVQ  + F R ++S+P ++ HDAN
Sbjct: 148 VTDAEMGFEKIVKIAHSRGVCKQQKVASKLKVERKRTVQDTNIFIRFVTSIPNINKHDAN 207

Query: 205 SLNQAIGSIEAIAKASKECILENTDLSVDKAERIRSFFRDPKFYLSPKIN 255
           +L QAIGSIEAIAKASKE IL NTDLS  KA+ +  FF+DP+FYLSPK N
Sbjct: 208 TLYQAIGSIEAIAKASKEDILANTDLSSKKADTLTRFFQDPEFYLSPKFN 250

[Close]

BLAST of Carg22878 vs. ExPASy Swiss-Prot
Match: Q6L5B5 (Protein PARTING DANCERS homolog OS=Oryza sativa subsp. japonica OX=39947 GN=PTD PE=1 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 5.4e-80
Identity = 148/237 (62.45%), Postives = 184/237 (77.64%), Query Frame = 0


Query: 18  KPKNSGGGVCLMSNIWRDEQHPSTINFMSNFLSANSFRLNFVPIAPVIFFTFSDLIFNCG 77
           +P   G GVC MS  WRD+Q PS INF++ FL+ANS+RLNF+ I+P       D IFN G
Sbjct: 19  EPAAPGRGVCAMSTSWRDKQQPSLINFIAAFLAANSYRLNFLSISP-------DFIFNNG 78

Query: 78  GLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTKEQNDSFVQSYFRNGMEI 137
            LSVAF F T+WDC N  ++F RV  L +Q  + YVVVA+PTKEQN+SF +SY + GM++
Sbjct: 79  ELSVAFIFETNWDCQNEGAVFSRVNMLKRQLKHLYVVVAVPTKEQNESFNRSYHKYGMKL 138

Query: 138 GKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKRTVQVMDAFRRVMSSVPG 197
           G P FVPV D EMGFEKIVKIAH+ G CKQQD++S+L+ ER++ VQ  D+F RV++S+PG
Sbjct: 139 GFPTFVPVTDPEMGFEKIVKIAHALGVCKQQDIISRLKNEREQAVQCTDSFLRVLTSIPG 198

Query: 198 LDDHDANSLNQAIGSIEAIAKASKECILENTDLSVDKAERIRSFFRDPKFYLSPKIN 255
           +D+HDAN+L QAIGSIEAIAKASK+ ILENTDLS DKAE I  FFRDP++YLSPKIN
Sbjct: 199 IDNHDANALAQAIGSIEAIAKASKKFILENTDLSTDKAETIVRFFRDPQYYLSPKIN 248

[Close]

BLAST of Carg22878 vs. ExPASy TrEMBL
Match: A0A6J1FJ08 (protein PARTING DANCERS OS=Cucurbita moschata OX=3662 GN=LOC111444705 PE=4 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 5.2e-134
Identity = 245/254 (96.46%), Postives = 246/254 (96.85%), Query Frame = 0


Query: 1   MGSLSQRHVNQMDGNQVKPKNSGGGVCLMSNIWRDEQHPSTINFMSNFLSANSFRLNFVP 60
           MGSLSQRHVNQMDGNQVK KNSGGGVCLMSNIWRDEQHPSTINFMSNFLSANSFRLNFVP
Sbjct: 1   MGSLSQRHVNQMDGNQVKAKNSGGGVCLMSNIWRDEQHPSTINFMSNFLSANSFRLNFVP 60

Query: 61  IAPVIFFTFSDLIFNCGGLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTK 120
           IAP       DLIFNCGGLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTK
Sbjct: 61  IAP-------DLIFNCGGLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTK 120

Query: 121 EQNDSFVQSYFRNGMEIGKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR 180
           EQNDSFVQSYFRNGMEIGKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR
Sbjct: 121 EQNDSFVQSYFRNGMEIGKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR 180

Query: 181 TVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKECILENTDLSVDKAERIRS 240
           +VQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKECILENTDLSVDKAERIRS
Sbjct: 181 SVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKECILENTDLSVDKAERIRS 240

Query: 241 FFRDPKFYLSPKIN 255
           FFRDPKFYLSPKIN
Sbjct: 241 FFRDPKFYLSPKIN 247

[Close]

BLAST of Carg22878 vs. ExPASy TrEMBL
Match: A0A6J1JWN6 (protein PARTING DANCERS OS=Cucurbita maxima OX=3661 GN=LOC111489015 PE=4 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 3.2e-131
Identity = 242/254 (95.28%), Postives = 243/254 (95.67%), Query Frame = 0


Query: 1   MGSLSQRHVNQMDGNQVKPKNSGGGVCLMSNIWRDEQHPSTINFMSNFLSANSFRLNFVP 60
           MGSLSQR VNQMDGNQVK KNSGGGVCLMSNIWRDEQHPSTINFMSNFLS NSFRLNFVP
Sbjct: 1   MGSLSQRDVNQMDGNQVKAKNSGGGVCLMSNIWRDEQHPSTINFMSNFLSTNSFRLNFVP 60

Query: 61  IAPVIFFTFSDLIFNCGGLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTK 120
           IAP       DLIFNCGGLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTK
Sbjct: 61  IAP-------DLIFNCGGLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTK 120

Query: 121 EQNDSFVQSYFRNGMEIGKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR 180
           EQNDSFVQSYFRNGMEIGKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR
Sbjct: 121 EQNDSFVQSYFRNGMEIGKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR 180

Query: 181 TVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKECILENTDLSVDKAERIRS 240
           +VQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKE ILENTDLSVDKAERIRS
Sbjct: 181 SVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKEYILENTDLSVDKAERIRS 240

Query: 241 FFRDPKFYLSPKIN 255
           FFRDPKFYLSPKIN
Sbjct: 241 FFRDPKFYLSPKIN 247

[Close]

BLAST of Carg22878 vs. ExPASy TrEMBL
Match: A0A6J1DG15 (protein PARTING DANCERS isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020175 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 5.6e-120
Identity = 221/254 (87.01%), Postives = 232/254 (91.34%), Query Frame = 0


Query: 1   MGSLSQRHVNQMDGNQVKPKNSGGGVCLMSNIWRDEQHPSTINFMSNFLSANSFRLNFVP 60
           M +LSQ   N+M GNQVK KNS GGVCLMSN+WRDEQHPS INFMSNFLS NSFRLNFVP
Sbjct: 1   MANLSQSDANRMAGNQVKAKNSDGGVCLMSNVWRDEQHPSFINFMSNFLSTNSFRLNFVP 60

Query: 61  IAPVIFFTFSDLIFNCGGLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTK 120
           IAP       DLIFNCGGLSVAFAFVTSWDCSNTSSIF RVQKL KQFANFY VVALPTK
Sbjct: 61  IAP-------DLIFNCGGLSVAFAFVTSWDCSNTSSIFSRVQKLKKQFANFYAVVALPTK 120

Query: 121 EQNDSFVQSYFRNGMEIGKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR 180
           EQNDSFV+SYFRNGMEIGKPPF+PVQD+EMGFEKIVKIAHSRGACKQQDVMSKLRTERKR
Sbjct: 121 EQNDSFVKSYFRNGMEIGKPPFLPVQDIEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR 180

Query: 181 TVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKECILENTDLSVDKAERIRS 240
           +VQ MDAFRRV++SVPG+DDHDANSLNQAIGSIEAIAKASKE ILENTDLS DKAERIR+
Sbjct: 181 SVQDMDAFRRVITSVPGIDDHDANSLNQAIGSIEAIAKASKEYILENTDLSADKAERIRA 240

Query: 241 FFRDPKFYLSPKIN 255
           FFRDPKFYLSPKIN
Sbjct: 241 FFRDPKFYLSPKIN 247

[Close]

BLAST of Carg22878 vs. ExPASy TrEMBL
Match: A0A0A0LMP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G401330 PE=4 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 1.8e-118
Identity = 219/254 (86.22%), Postives = 231/254 (90.94%), Query Frame = 0


Query: 1   MGSLSQRHVNQMDGNQVKPKNSGGGVCLMSNIWRDEQHPSTINFMSNFLSANSFRLNFVP 60
           M + SQR  +QM GNQVK KN GGGVCLMSN+WRDEQHPS INF+SNFL +NSFRLNFVP
Sbjct: 1   MANSSQRDADQMVGNQVKAKNDGGGVCLMSNVWRDEQHPSFINFISNFLCSNSFRLNFVP 60

Query: 61  IAPVIFFTFSDLIFNCGGLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTK 120
           IAP       DLIFNCGGLSVAFAF+TSW+CSNTSSIF RVQKL KQFAN YVVV LPTK
Sbjct: 61  IAP-------DLIFNCGGLSVAFAFLTSWECSNTSSIFSRVQKLKKQFANLYVVVVLPTK 120

Query: 121 EQNDSFVQSYFRNGMEIGKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR 180
           EQNDSFVQSYFRNGMEIGKPPFV VQD+EMGFEKIVKIAHSRGACKQQD++SKLRTERKR
Sbjct: 121 EQNDSFVQSYFRNGMEIGKPPFVAVQDIEMGFEKIVKIAHSRGACKQQDIISKLRTERKR 180

Query: 181 TVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKECILENTDLSVDKAERIRS 240
           +VQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKE ILENTDLSV+KAERIRS
Sbjct: 181 SVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKEYILENTDLSVEKAERIRS 240

Query: 241 FFRDPKFYLSPKIN 255
           FFRDPK YLSPKIN
Sbjct: 241 FFRDPKLYLSPKIN 247

[Close]

BLAST of Carg22878 vs. ExPASy TrEMBL
Match: A0A6J1DDY5 (protein PARTING DANCERS isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020175 PE=4 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 2.0e-117
Identity = 219/254 (86.22%), Postives = 230/254 (90.55%), Query Frame = 0


Query: 1   MGSLSQRHVNQMDGNQVKPKNSGGGVCLMSNIWRDEQHPSTINFMSNFLSANSFRLNFVP 60
           M +LSQ   N+M GNQVK KNS GGVCLMSN+WRDEQHPS INFMSNFLS NSFRLNFVP
Sbjct: 1   MANLSQSDANRMAGNQVKAKNSDGGVCLMSNVWRDEQHPSFINFMSNFLSTNSFRLNFVP 60

Query: 61  IAPVIFFTFSDLIFNCGGLSVAFAFVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTK 120
           IAP       DLIFNCGGLSVAFAFVTSWDCSNTSSIF RVQKL KQFANFY VVALPTK
Sbjct: 61  IAP-------DLIFNCGGLSVAFAFVTSWDCSNTSSIFSRVQKLKKQFANFYAVVALPTK 120

Query: 121 EQNDSFVQSYFRNGMEIGKPPFVPVQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKR 180
           EQNDSFV+SYFRNGMEIGKPPF+PVQD+EMGFEKIVKIAHSRGACKQQDVMSKLRTE  R
Sbjct: 121 EQNDSFVKSYFRNGMEIGKPPFLPVQDIEMGFEKIVKIAHSRGACKQQDVMSKLRTE--R 180

Query: 181 TVQVMDAFRRVMSSVPGLDDHDANSLNQAIGSIEAIAKASKECILENTDLSVDKAERIRS 240
           +VQ MDAFRRV++SVPG+DDHDANSLNQAIGSIEAIAKASKE ILENTDLS DKAERIR+
Sbjct: 181 SVQDMDAFRRVITSVPGIDDHDANSLNQAIGSIEAIAKASKEYILENTDLSADKAERIRA 240

Query: 241 FFRDPKFYLSPKIN 255
           FFRDPKFYLSPKIN
Sbjct: 241 FFRDPKFYLSPKIN 245

[Close]

BLAST of Carg22878 vs. TAIR 10
Match: AT1G12790.1 (CONTAINS InterPro DOMAIN/s: RuvA domain 2-like (InterPro:IPR010994); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 299.3 bits (765), Expect = 3.0e-81
Identity = 153/230 (66.52%), Postives = 177/230 (76.96%), Query Frame = 0


Query: 25  GVCLMSNIWRDEQHPSTINFMSNFLSANSFRLNFVPIAPVIFFTFSDLIFNCGGLSVAFA 84
           GVC+MSN W+ EQ PS INF+S FLSANSFRLNFV I P       DLIFNCGG+S+AF 
Sbjct: 28  GVCIMSNAWKVEQEPSLINFISAFLSANSFRLNFVSIPP-------DLIFNCGGVSIAFV 87

Query: 85  FVTSWDCSNTSSIFCRVQKLMKQFANFYVVVALPTKEQNDSFVQSYFRNGMEIGKPPFVP 144
           FVT WD SN +SIF RV++L  QFA  YVV  L TKEQ+DSF++SYF+  ME GKP FV 
Sbjct: 88  FVTKWDFSNVASIFSRVKRLKGQFAQLYVVATLSTKEQSDSFMRSYFQYEMEFGKPAFVQ 147

Query: 145 VQDVEMGFEKIVKIAHSRGACKQQDVMSKLRTERKRTVQVMDAFRRVMSSVPGLDDHDAN 204
           V D EMGFEKIVKIAHSRG CKQQ V SKL+ ERKRTVQ  + F R ++S+P ++ HDAN
Sbjct: 148 VTDAEMGFEKIVKIAHSRGVCKQQKVASKLKVERKRTVQDTNIFIRFVTSIPNINKHDAN 207

Query: 205 SLNQAIGSIEAIAKASKECILENTDLSVDKAERIRSFFRDPKFYLSPKIN 255
           +L QAIGSIEAIAKASKE IL NTDLS  KA+ +  FF+DP+FYLSPK N
Sbjct: 208 TLYQAIGSIEAIAKASKEDILANTDLSSKKADTLTRFFQDPEFYLSPKFN 250

The following BLAST results are available for this feature:

BLAST of Carg22878 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015892.1	9.1e-141	100.00	Protein PARTING DANCERS, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022938483.1	1.1e-133	96.46	protein PARTING DANCERS [Cucurbita moschata]	[more]
XP_022992780.1	6.5e-131	95.28	protein PARTING DANCERS [Cucurbita maxima]	[more]
XP_022152444.1	1.2e-119	87.01	protein PARTING DANCERS isoform X1 [Momordica charantia]	[more]
XP_038884563.1	4.4e-119	87.01	protein PARTING DANCERS isoform X1 [Benincasa hispida] >XP_038884564.1 protein P...	[more]

BLAST of Carg22878 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IDW9	4.2e-80	66.52	Protein PARTING DANCERS OS=Arabidopsis thaliana OX=3702 GN=PTD PE=1 SV=1	[more]
Q6L5B5	5.4e-80	62.45	Protein PARTING DANCERS homolog OS=Oryza sativa subsp. japonica OX=39947 GN=PTD ...	[more]

BLAST of Carg22878 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJ08	5.2e-134	96.46	protein PARTING DANCERS OS=Cucurbita moschata OX=3662 GN=LOC111444705 PE=4 SV=1	[more]
A0A6J1JWN6	3.2e-131	95.28	protein PARTING DANCERS OS=Cucurbita maxima OX=3661 GN=LOC111489015 PE=4 SV=1	[more]
A0A6J1DG15	5.6e-120	87.01	protein PARTING DANCERS isoform X1 OS=Momordica charantia OX=3673 GN=LOC11102017...	[more]
A0A0A0LMP7	1.8e-118	86.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G401330 PE=4 SV=1	[more]
A0A6J1DDY5	2.0e-117	86.22	protein PARTING DANCERS isoform X2 OS=Momordica charantia OX=3673 GN=LOC11102017...	[more]

BLAST of Carg22878 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12790.1	3.0e-81	66.52	CONTAINS InterPro DOMAIN/s: RuvA domain 2-like (InterPro:IPR010994); Has 29 Blas...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.150.20		coord: 166..250 e-value: 1.5E-7 score: 33.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
IPR039172	Protein parting dancers	PANTHER	PTHR37394	PROTEIN PARTING DANCERS	coord: 16..254
IPR010994	RuvA domain 2-like	SUPERFAMILY	47781	RuvA domain 2-like	coord: 179..246

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22878-RA	Carg22878-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007140	male meiotic nuclear division
biological_process	GO:0048236	plant-type sporogenesis
biological_process	GO:0009555	pollen development
biological_process	GO:0010845	positive regulation of reciprocal meiotic recombination
biological_process	GO:0000712	resolution of meiotic recombination intermediates
cellular_component	GO:0005694	chromosome
cellular_component	GO:0005634	nucleus