Carg22865 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg22865
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr15: 306992 .. 310002 (+)
RNA-Seq ExpressionCarg22865
SyntenyCarg22865
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAATTGTTTTATTTAAAACAAATAATAAGATTTTTTATATTTTTTATTTATTTATGTATTTATTAAAGCCTAAAACTATTATTCAAAAAAGTTGAGATTTTTTTTTTTTTTAAATTAATTTAGCTCCCAAAAAAACTGAAAAGAAAACGAAAAGAAAGGAGCGGCGGAGGCAAACACGGCTATAGGCTGCAAGCAAAGGACAAGAAGTTTGCTCTCTCAGTCTCGGCCAATCTGTGGCTCGCATCGTCCTAATTCTCGCAGTGGGTGACGTTTCTTCTTCAACCACCGCTGCACAACCACAACTCTGTACGCTTGACTTTGATTCCCTCTGCGAGCAATTCGCCACCAAGCTCCCTCAAATTTCAGGTTCTTCCTCTAATTTCATCTCTATGCTCCGTTTGCAGCTCTTTGAAGAAATTTGGATCCTTGTTTCGTTCATATAACGAAGTAGGTATCTTAATTGGATATGTTAACTGCTCCTTTTTCGCATTCGGTTTTGATCGAAATTCCAATCTCGAAGGAACCTCTTTGCTCGTGTCACACACACACAATTCAATTCAATTCAATTAAGAGAATATTCAGATATAAGCGCTCGAGCTCCTCCTGTTATGAACTGCAAGTTTATCTTTGTATACAATGGCGATACTGCCTTATTGCGGATGATATGATCCATTTCTCTTGGATAAGAAAGACATTGGTTGAAAATTTTGCTGCATGATATAGTCATAAAACATAGTGTTCACATTGCATATTTGCATAATGCTAGTGCACTTTTTGGAAGATCACATCATGTCGTATAGCAACATCTTTCTGTTTATGCTGGAGTATTCGCTAGGAGTTGTTGCCTCTACTCTGCCAACTCCACGAACAAAATTTTGATCATGGCTACCTTTTGACGACTGGCAGTCAAAAAGAAGGAATTATAGTTTATTACTTCAACATGTGGGGTAGGATTGAAACGTTTATTTGAAATTGTTCAACATCATGGTACATTTGAGATCCCTTAACTTTTGCATGTTCATGCAATTCCATAACTGACGGAAATGGGCTGTAGAGCATGGTCTAATTACTGACTTGAGTGGTTGTTTGTTTTTTCGATTTGTGTAATTGTATGTGTATTCTATGGAATGAGGCACTAACCACTTTGTCCGTACTGGTGGAAAAACCTCGATGATCAATTTCAGCAGTTTTCTTATCTTTTTCAATGAAATATGTAGTTCACCACGTACAAATTTGTCTTCATAGATTATTTTATCTATTATTGTGGATTCAATGAGTATTAGATGTCTAGAAATAAAGGATATAGTGTCTGATAGGTTAGAACTGAAGAGATATTCGTATAATTTGTATCAGAATGGAAAACATAGGAATCAGAAGCTCGTAAGATTGAATTCTTGTTTGAATGACACATGAATGTAATTGAACTTGGTCCCAAAAATCAAGGACTTCATATCAAACGCCTTCTAAGAGGCTTCCGAGGATCTCAACCATCTTTTGCTTCACTTTCCACGTACTAATGTTCTCTTCCATGAATTCTTTTCAAAGCTCTATTGTGAGCATGGTCACCAATCTTACATGTGGAATTGACTTTTAAAGAGATCCTAGTTAGCCATCCTGTCTACATAGAGCCGCCTATTAATGTTTGATACCATTGTTATTTCGGAAGTTGGAACTTTTGCATTCTTGAATGATTTCACTATATCCTTTAGTTAACATATTTTTGCGAGGGCTTCTATTGTTATATCTATCAGGCATACTTGTAAAGCTTTAAATTTTTGTGAGGTCCTTTTTATATACTCAGTACTTGTCGGATTTTCTTTTGTTCCAATTTCCCATGACTCTCTTGAACTCAGAACTTGGATAAAGTTGACAATCCTAATAGACTGAGACATGATTTTGCATGGAAATTCATCTACTAGCTCGTTGATAAATTTTTTATTGGTAGTACGGTTATTTCAAAATACTAATGTTGGAAGGTAATTGTAACTTGGAAACTCTGCCTTTGATAGAACAATTCTCTTTGTTGCATTAACTCGCTTGGATCTTCTCCATGCGTGAATGGAACTCATTGTTGATTCAAAGAAAATGTTTAATCACAATTTAGGAATGGGAGGGACTTTCTGTGTGAAATGAGTCATATTTTATGAATGGTACGTGTATTACTAAACTTGTTAATATGGTACAGGGATGCAAGGAAAATCATTGGTATCTCCCATATCAACAGTTGATTCTGTAACTCGTCTCTGCTTTTCTACTGTGAGTAGCAGCTTTTGTCTCGTACGATGGAAAACTATTGACTTCATACTCTTATTGCTCAATCAATACTTTTATACATTATCTTATAGGGTTTAAATTTATTCTTAAAATCTCATTGCAGCCCTGCATTGGCACCGCCAAATCAGAAGCCGTATTGTTCAAATGTGAGTTTCTCCTATCAGCCTGCTAAGTATATGATAATGGATGTGAGGAGACAAAGTCCCTATCCGAGGAAGTGGGAAATCCATTCAACTGCTCAAGTCGAAAGCTTGGTATTAAGTGATGAGGATAAGAAGACATGGGAAGCTTGTCGGCAAGCTCTGTCCATGTTCAGCTTTAGTGATGAGGAGCAAGATAAGATGCTCGGAAAGGCGTTTGGCCACATTCATTCACCCTACTGGGGCGAAGACAGAAAGAAGGAAGTTCCTAATATTGATACCGTAAAGGAGATACTGGAATATCTGAGGACACTTGGGCTCTCTAATGATGATCTCTCTAAGCTGCTCAAAAAATTCCCTGAAGTTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTGTTGGAGAAGGAGTGGGGAATTCAAGGCAAATCACTAAGGAGTCTTCTTCTGCGTAATCCCAAGGTATTGGGTTACAACGTTGATTGTAAAGGAGACTGCATTGCAAAATGCACCAGATGCTGGGTTCGATTCTAATCACACTTTCTTTTACACAATTTCTTATACCAATAATAACTTATGCA

mRNA sequence

ATGTTAATTCTCCCAAAAAAACTGAAAAGAAAACGAAAAGAAAGGAGCGGCGGAGGCAAACACGGCTATAGGCTGCAAGCAAAGGACAAGAATCTCGGCCAATCTGTGGCTCGCATCGTCCTAATTCTCGCAGTGGGTGACGTTTCTTCTTCAACCACCGCTGCACAACCACAACTCTGTACGCTTGACTTTGATTCCCTCTGCGAGCAATTCGCCACCAAGCTCCCTCAAATTTCAGGGATGCAAGGAAAATCATTGGTATCTCCCATATCAACAGTTGATTCTGTAACTCGTCTCTGCTTTTCTACTCCCTGCATTGGCACCGCCAAATCAGAAGCCGTATTGTTCAAATGTGAGTTTCTCCTATCAGCCTGCTAAGTATATGATAATGGATGTGAGGAGACAAAGTCCCTATCCGAGGAAGTGGGAAATCCATTCAACTGCTCAAGTCGAAAGCTTGGTATTAAGTGATGAGGATAAGAAGACATGGGAAGCTTGTCGGCAAGCTCTGTCCATGTTCAGCTTTAGTGATGAGGAGCAAGATAAGATGCTCGGAAAGGCGTTTGGCCACATTCATTCACCCTACTGGGGCGAAGACAGAAAGAAGGAAGTTCCTAATATTGATACCGTAAAGGAGATACTGGAATATCTGAGGACACTTGGGCTCTCTAATGATGATCTCTCTAAGCTGCTCAAAAAATTCCCTGAAGTTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTGTTGGAGAAGGAGTGGGGAATTCAAGGCAAATCACTAAGGAGTCTTCTTCTGCGTAATCCCAAGGTATTGGGTTACAACGTTGATTGTAAAGGAGACTGCATTGCAAAATGCACCAGATGCTGGGTTCGATTCTAATCACACTTTCTTTTACACAATTTCTTATACCAATAATAACTTATGCA

Coding sequence (CDS)

ATGTTAATTCTCCCAAAAAAACTGAAAAGAAAACGAAAAGAAAGGAGCGGCGGAGGCAAACACGGCTATAGGCTGCAAGCAAAGGACAAGAATCTCGGCCAATCTGTGGCTCGCATCGTCCTAATTCTCGCAGTGGGTGACGTTTCTTCTTCAACCACCGCTGCACAACCACAACTCTGTACGCTTGACTTTGATTCCCTCTGCGAGCAATTCGCCACCAAGCTCCCTCAAATTTCAGGGATGCAAGGAAAATCATTGGTATCTCCCATATCAACAGTTGATTCTGTAACTCGTCTCTGCTTTTCTACTCCCTGCATTGGCACCGCCAAATCAGAAGCCGTATTGTTCAAATGTGAGTTTCTCCTATCAGCCTGCTAA

Protein sequence

MLILPKKLKRKRKERSGGGKHGYRLQAKDKNLGQSVARIVLILAVGDVSSSTTAAQPQLCTLDFDSLCEQFATKLPQISGMQGKSLVSPISTVDSVTRLCFSTPCIGTAKSEAVLFKCEFLLSAC
Homology
[Close]
BLAST of Carg22865 vs. NCBI nr
Match: KAG7015905.1 (hypothetical protein SDJN02_21008, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241.1 bits (614), Expect = 5.1e-60
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MLILPKKLKRKRKERSGGGKHGYRLQAKDKNLGQSVARIVLILAVGDVSSSTTAAQPQLC 60
           MLILPKKLKRKRKERSGGGKHGYRLQAKDKNLGQSVARIVLILAVGDVSSSTTAAQPQLC
Sbjct: 1   MLILPKKLKRKRKERSGGGKHGYRLQAKDKNLGQSVARIVLILAVGDVSSSTTAAQPQLC 60

Query: 61  TLDFDSLCEQFATKLPQISGMQGKSLVSPISTVDSVTRLCFSTPCIGTAKSEAVLFKCEF 120
           TLDFDSLCEQFATKLPQISGMQGKSLVSPISTVDSVTRLCFSTPCIGTAKSEAVLFKCEF
Sbjct: 61  TLDFDSLCEQFATKLPQISGMQGKSLVSPISTVDSVTRLCFSTPCIGTAKSEAVLFKCEF 120

Query: 121 LLSAC 126
           LLSAC
Sbjct: 121 LLSAC 125

[Close]
BLAST of Carg22865 vs. NCBI nr
Match: KAG6578327.1 (hypothetical protein SDJN03_22775, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.9 bits (398), Expect = 5.6e-35
Identity = 83/89 (93.26%), Postives = 83/89 (93.26%), Query Frame = 0 

Query: 32  LGQSVARIVLILAVGDVSSSTTAAQPQLCTLDFDSLCEQFATKLPQISGMQGKSLVSPIS 91
           LGQSVARIVLILAVGDVSSSTTAAQPQLCTLDFDSLCEQFATKLPQISGM GKSLVSPIS
Sbjct: 6   LGQSVARIVLILAVGDVSSSTTAAQPQLCTLDFDSLCEQFATKLPQISGMLGKSLVSPIS 65

Query: 92  TVDSVTRLCFSTPCIGTAKSEAVLFKCEF 121
           TVDSVTRLCFSTPCIGTAKSEAV     F
Sbjct: 66  TVDSVTRLCFSTPCIGTAKSEAVCSNVSF 94

[Close]
BLAST of Carg22865 vs. NCBI nr
Match: XP_022938853.1 (uncharacterized protein LOC111444935 [Cucurbita moschata])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-07
Identity = 34/40 (85.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 81  MQGKSLVSPISTVDSVTRLCFSTPCIGTAKSEAVLFKCEF 121
           M GKSLVSPISTVDSVTRLCFSTPCIGTAKSEAV     F
Sbjct: 1   MLGKSLVSPISTVDSVTRLCFSTPCIGTAKSEAVCSNVSF 40

[Close]
BLAST of Carg22865 vs. NCBI nr
Match: XP_023549996.1 (uncharacterized protein LOC111808316 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.1 bits (157), Expect = 5.0e-07
Identity = 33/40 (82.50%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 81  MQGKSLVSPISTVDSVTRLCFSTPCIGTAKSEAVLFKCEF 121
           M GKSLVSPISTVDSVTRLCFSTPC GTAKSEAV     F
Sbjct: 1   MLGKSLVSPISTVDSVTRLCFSTPCTGTAKSEAVCSNVSF 40

[Close]
BLAST of Carg22865 vs. NCBI nr
Match: XP_022993737.1 (uncharacterized protein LOC111489650 [Cucurbita maxima])

HSP 1 Score: 64.3 bits (155), Expect = 8.5e-07
Identity = 33/40 (82.50%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 81  MQGKSLVSPISTVDSVTRLCFSTPCIGTAKSEAVLFKCEF 121
           M GKSLVSPISTVDSVTRLCFSTPCIGTAKS AV     F
Sbjct: 1   MLGKSLVSPISTVDSVTRLCFSTPCIGTAKSGAVCSNVSF 40

[Close]
BLAST of Carg22865 vs. ExPASy TrEMBL
Match: A0A6J1FK31 (uncharacterized protein LOC111444935 OS=Cucurbita moschata OX=3662 GN=LOC111444935 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.3e-08
Identity = 34/40 (85.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 81  MQGKSLVSPISTVDSVTRLCFSTPCIGTAKSEAVLFKCEF 121
           M GKSLVSPISTVDSVTRLCFSTPCIGTAKSEAV     F
Sbjct: 1   MLGKSLVSPISTVDSVTRLCFSTPCIGTAKSEAVCSNVSF 40

[Close]
BLAST of Carg22865 vs. ExPASy TrEMBL
Match: A0A6J1JTP6 (uncharacterized protein LOC111489650 OS=Cucurbita maxima OX=3661 GN=LOC111489650 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.1e-07
Identity = 33/40 (82.50%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 81  MQGKSLVSPISTVDSVTRLCFSTPCIGTAKSEAVLFKCEF 121
           M GKSLVSPISTVDSVTRLCFSTPCIGTAKS AV     F
Sbjct: 1   MLGKSLVSPISTVDSVTRLCFSTPCIGTAKSGAVCSNVSF 40

The following BLAST results are available for this feature:
BLAST of Carg22865 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015905.15.1e-60100.00hypothetical protein SDJN02_21008, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6578327.15.6e-3593.26hypothetical protein SDJN03_22775, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022938853.11.3e-0785.00uncharacterized protein LOC111444935 [Cucurbita moschata][more]
XP_023549996.15.0e-0782.50uncharacterized protein LOC111808316 [Cucurbita pepo subsp. pepo][more]
XP_022993737.18.5e-0782.50uncharacterized protein LOC111489650 [Cucurbita maxima][more]
BLAST of Carg22865 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg22865 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FK316.3e-0885.00uncharacterized protein LOC111444935 OS=Cucurbita moschata OX=3662 GN=LOC1114449... [more]
A0A6J1JTP64.1e-0782.50uncharacterized protein LOC111489650 OS=Cucurbita maxima OX=3661 GN=LOC111489650... [more]
BLAST of Carg22865 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22865-RACarg22865-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006353 DNA-templated transcription, termination
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003690 double-stranded DNA binding