Carg22861 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22861
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Trinucleotide repeat-containing gene 18 protein-like protein
Location	Carg_Chr15: 325664 .. 326242 (+)
RNA-Seq Expression	Carg22861
Synteny	Carg22861

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCAATCTTCCCGCCGTTCTCATTCCTTCTCTTCTTCTTCTTCCTCTTCCCTCTCCTCCTCCTCCTCCTCCTCTTCCTCCCGTGGCTCTTGCTATTTTCCCAACAACTCTCCGTTCTCCGCCGCCGCCACTCCGGTCCGAACATTCTCCGGCAGTATTCCGTTCTCTTGGGAACATTTGCCTGGAATCCCCAAGAAACAGTCTCCAGCAAGGCTCCGGCGGGATTCCGCCTCTCCTCTGACCTCTCTCCTCCCCTTACCTCCCAATTCCTCCACCCAACCCTCGTCAAAGCGCTTAGGATTTCAAGATTGGAGGAAATCGAACTGCCAATATTCGCAGCGTGATCCTTTCTTCGACGCCTTCATAGAGTGCTCTAAGGAACCTGCCGCCGCCACCGAGCTCTGGAGGGGCGACAGCAATGGCAAGACGGTTTCTAGAAGCCTGAGCGATCGATTCGGATTCATGAATCTATACTCTTCTTGCAAACGGACCTGCAGCGTTTCGGAATCCATCGTGTATCTTCCGAGAACGCCGAGGAGTTCGTTCGATCTGCTTAACCAGCGCACCGGCGGCTAA

mRNA sequence

ATGTTTCAATCTTCCCGCCGTTCTCATTCCTTCTCTTCTTCTTCTTCCTCTTCCCTCTCCTCCTCCTCCTCCTCCTCTTCCTCCCGTGGCTCTTGCTATTTTCCCAACAACTCTCCGTTCTCCGCCGCCGCCACTCCGGTCCGAACATTCTCCGGCAGTATTCCGTTCTCTTGGGAACATTTGCCTGGAATCCCCAAGAAACAGTCTCCAGCAAGGCTCCGGCGGGATTCCGCCTCTCCTCTGACCTCTCTCCTCCCCTTACCTCCCAATTCCTCCACCCAACCCTCGTCAAAGCGCTTAGGATTTCAAGATTGGAGGAAATCGAACTGCCAATATTCGCAGCGTGATCCTTTCTTCGACGCCTTCATAGAGTGCTCTAAGGAACCTGCCGCCGCCACCGAGCTCTGGAGGGGCGACAGCAATGGCAAGACGGTTTCTAGAAGCCTGAGCGATCGATTCGGATTCATGAATCTATACTCTTCTTGCAAACGGACCTGCAGCGTTTCGGAATCCATCGTGTATCTTCCGAGAACGCCGAGGAGTTCGTTCGATCTGCTTAACCAGCGCACCGGCGGCTAA

Coding sequence (CDS)

ATGTTTCAATCTTCCCGCCGTTCTCATTCCTTCTCTTCTTCTTCTTCCTCTTCCCTCTCCTCCTCCTCCTCCTCCTCTTCCTCCCGTGGCTCTTGCTATTTTCCCAACAACTCTCCGTTCTCCGCCGCCGCCACTCCGGTCCGAACATTCTCCGGCAGTATTCCGTTCTCTTGGGAACATTTGCCTGGAATCCCCAAGAAACAGTCTCCAGCAAGGCTCCGGCGGGATTCCGCCTCTCCTCTGACCTCTCTCCTCCCCTTACCTCCCAATTCCTCCACCCAACCCTCGTCAAAGCGCTTAGGATTTCAAGATTGGAGGAAATCGAACTGCCAATATTCGCAGCGTGATCCTTTCTTCGACGCCTTCATAGAGTGCTCTAAGGAACCTGCCGCCGCCACCGAGCTCTGGAGGGGCGACAGCAATGGCAAGACGGTTTCTAGAAGCCTGAGCGATCGATTCGGATTCATGAATCTATACTCTTCTTGCAAACGGACCTGCAGCGTTTCGGAATCCATCGTGTATCTTCCGAGAACGCCGAGGAGTTCGTTCGATCTGCTTAACCAGCGCACCGGCGGCTAA

Protein sequence

MFQSSRRSHSFSSSSSSSLSSSSSSSSSRGSCYFPNNSPFSAAATPVRTFSGSIPFSWEHLPGIPKKQSPARLRRDSASPLTSLLPLPPNSSTQPSSKRLGFQDWRKSNCQYSQRDPFFDAFIECSKEPAAATELWRGDSNGKTVSRSLSDRFGFMNLYSSCKRTCSVSESIVYLPRTPRSSFDLLNQRTGG

Homology

[Close]

BLAST of Carg22861 vs. NCBI nr
Match: KAG7015908.1 (hypothetical protein SDJN02_21012, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 369.0 bits (946), Expect = 2.5e-98
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MFQSSRRSHSFSSSSSSSLSSSSSSSSSRGSCYFPNNSPFSAAATPVRTFSGSIPFSWEH 60
           MFQSSRRSHSFSSSSSSSLSSSSSSSSSRGSCYFPNNSPFSAAATPVRTFSGSIPFSWEH
Sbjct: 1   MFQSSRRSHSFSSSSSSSLSSSSSSSSSRGSCYFPNNSPFSAAATPVRTFSGSIPFSWEH 60

Query: 61  LPGIPKKQSPARLRRDSASPLTSLLPLPPNSSTQPSSKRLGFQDWRKSNCQYSQRDPFFD 120
           LPGIPKKQSPARLRRDSASPLTSLLPLPPNSSTQPSSKRLGFQDWRKSNCQYSQRDPFFD
Sbjct: 61  LPGIPKKQSPARLRRDSASPLTSLLPLPPNSSTQPSSKRLGFQDWRKSNCQYSQRDPFFD 120

Query: 121 AFIECSKEPAAATELWRGDSNGKTVSRSLSDRFGFMNLYSSCKRTCSVSESIVYLPRTPR 180
           AFIECSKEPAAATELWRGDSNGKTVSRSLSDRFGFMNLYSSCKRTCSVSESIVYLPRTPR
Sbjct: 121 AFIECSKEPAAATELWRGDSNGKTVSRSLSDRFGFMNLYSSCKRTCSVSESIVYLPRTPR 180

Query: 181 SSFDLLNQRTGG 193
           SSFDLLNQRTGG
Sbjct: 181 SSFDLLNQRTGG 192

[Close]

BLAST of Carg22861 vs. NCBI nr
Match: XP_023549797.1 (putative protein TPRXL [Cucurbita pepo subsp. pepo])

HSP 1 Score: 363.2 bits (931), Expect = 1.4e-96
Identity = 192/196 (97.96%), Postives = 192/196 (97.96%), Query Frame = 0


Query: 1   MFQSSRRSHSFSSSSSSSL----SSSSSSSSSRGSCYFPNNSPFSAAATPVRTFSGSIPF 60
           MFQSSRRSHSFSSSSSSSL    SSSSSSSSSRGSCYFPNNSPFSAAATPVRTFSGSIPF
Sbjct: 1   MFQSSRRSHSFSSSSSSSLSSSSSSSSSSSSSRGSCYFPNNSPFSAAATPVRTFSGSIPF 60

Query: 61  SWEHLPGIPKKQSPARLRRDSASPLTSLLPLPPNSSTQPSSKRLGFQDWRKSNCQYSQRD 120
           SWEHLPGIPKKQSPARLRRDSASPLTSLLPLPPNSSTQPSSKRLGFQDWRKSNCQYSQRD
Sbjct: 61  SWEHLPGIPKKQSPARLRRDSASPLTSLLPLPPNSSTQPSSKRLGFQDWRKSNCQYSQRD 120

Query: 121 PFFDAFIECSKEPAAATELWRGDSNGKTVSRSLSDRFGFMNLYSSCKRTCSVSESIVYLP 180
           PFFDAFIECSKEPAAATELWRGDSNGKTVSRSLSDRFGFMNLYSSCKRTCSVSESIVYLP
Sbjct: 121 PFFDAFIECSKEPAAATELWRGDSNGKTVSRSLSDRFGFMNLYSSCKRTCSVSESIVYLP 180

Query: 181 RTPRSSFDLLNQRTGG 193
           RTPRSSFDLLNQRTGG
Sbjct: 181 RTPRSSFDLLNQRTGG 196

[Close]

BLAST of Carg22861 vs. NCBI nr
Match: KAG6578332.1 (hypothetical protein SDJN03_22780, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 360.5 bits (924), Expect = 8.8e-96
Identity = 191/197 (96.95%), Postives = 191/197 (96.95%), Query Frame = 0


Query: 1   MFQSSRRSHSFSSSSSSSL-----SSSSSSSSSRGSCYFPNNSPFSAAATPVRTFSGSIP 60
           MFQSSRRSHSFSSSSSSSL     SSSSSSSSSRGSCYFPNNSPFSAAATPVRTFSGSIP
Sbjct: 1   MFQSSRRSHSFSSSSSSSLSSSSSSSSSSSSSSRGSCYFPNNSPFSAAATPVRTFSGSIP 60

Query: 61  FSWEHLPGIPKKQSPARLRRDSASPLTSLLPLPPNSSTQPSSKRLGFQDWRKSNCQYSQR 120
           FSWEHLPGIPKKQSPARLRRDSASPLTSLLPLPPNSSTQPSSKRLGFQDWRKSNCQY QR
Sbjct: 61  FSWEHLPGIPKKQSPARLRRDSASPLTSLLPLPPNSSTQPSSKRLGFQDWRKSNCQYLQR 120

Query: 121 DPFFDAFIECSKEPAAATELWRGDSNGKTVSRSLSDRFGFMNLYSSCKRTCSVSESIVYL 180
           DPFFDAFIECSKEPAAATELWRGDSNGKTVSRSLSDRFGFMNLYSSCKRTCSVSESIVYL
Sbjct: 121 DPFFDAFIECSKEPAAATELWRGDSNGKTVSRSLSDRFGFMNLYSSCKRTCSVSESIVYL 180

Query: 181 PRTPRSSFDLLNQRTGG 193
           PRTPRSSFDLLNQRTGG
Sbjct: 181 PRTPRSSFDLLNQRTGG 197

[Close]

BLAST of Carg22861 vs. NCBI nr
Match: XP_008441227.1 (PREDICTED: uncharacterized protein LOC103485423 [Cucumis melo] >KAA0037005.1 trinucleotide repeat-containing gene 18 protein-like protein [Cucumis melo var. makuwa] >TYK06646.1 trinucleotide repeat-containing gene 18 protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 303.5 bits (776), Expect = 1.3e-78
Identity = 161/195 (82.56%), Postives = 174/195 (89.23%), Query Frame = 0


Query: 1   MFQSSRRSHSFSSSSSSSLSSSSSSSSSRGSCYFPNNSPFSAAATPVRTFSGSIPFSWEH 60
           MFQSSRR+HSFSSSSS+SLSSSSSSSSSRGS YFP  SPFSA+ATP+R+FSG+IPFSWEH
Sbjct: 1   MFQSSRRTHSFSSSSSNSLSSSSSSSSSRGSYYFPGESPFSASATPIRSFSGNIPFSWEH 60

Query: 61  LPGIPKKQSPARLRRDSASPLTSLLPLPPNSSTQPSSKRLGFQDWRKSNCQYSQRDPFFD 120
           LPGIPKKQSPARLRR SASPL+SLLPLPPNS+T  SSKR GFQDWRKSN Q  QRDPFFD
Sbjct: 61  LPGIPKKQSPARLRRGSASPLSSLLPLPPNSTTLSSSKRFGFQDWRKSNRQNPQRDPFFD 120

Query: 121 AFIECSKEP---AAATELWRGDSNGKTVSRSLSDRFGFMNLYSSCKRTCSVSESIVYLPR 180
           AF+ECSKEP   A   ELW G SNGK ++RSLSDRFGF+NLYSSCKRTC VSESIVYLPR
Sbjct: 121 AFLECSKEPTNAAVDAELWSGASNGKAITRSLSDRFGFLNLYSSCKRTCGVSESIVYLPR 180

Query: 181 TPRSSFDLLNQRTGG 193
           TP SSFDLLNQR+GG
Sbjct: 181 TPTSSFDLLNQRSGG 195

[Close]

BLAST of Carg22861 vs. NCBI nr
Match: XP_038885392.1 (uncharacterized protein LOC120075791 [Benincasa hispida])

HSP 1 Score: 300.8 bits (769), Expect = 8.3e-78
Identity = 163/198 (82.32%), Postives = 175/198 (88.38%), Query Frame = 0


Query: 1   MFQSSRRSHSFSSSSSSSLSSSSSSSSSRGSCYFPNNSPFSAAATPVRTFSGSIPFSWEH 60
           MFQSSRR+HSFSSSSS+SL  SSSSSSSRGS YFP+ SPFS AATP+R+FSGSIPFSWEH
Sbjct: 1   MFQSSRRTHSFSSSSSNSL--SSSSSSSRGSYYFPDESPFSTAATPIRSFSGSIPFSWEH 60

Query: 61  LPGIPKKQSPARLRRDSASPLTSLLPLPPNSSTQPSSKRLGFQDWRKSNCQYSQRDPFFD 120
           LPGIPKKQSPARLRR SASPL+SLLPLPPNS T PSSKR GFQDWRKSN Q SQRDPFFD
Sbjct: 61  LPGIPKKQSPARLRRGSASPLSSLLPLPPNSITPPSSKRFGFQDWRKSNRQNSQRDPFFD 120

Query: 121 AFIECSKEPAAA----TELWR--GDSNGKTVSRSLSDRFGFMNLYSSCKRTCSVSESIVY 180
           AF+ECSKEP+ A     ELW   G SNGK ++RSLSDRFGF+NLYSSCKRTC VSESIVY
Sbjct: 121 AFLECSKEPSTAAAVDAELWSGGGGSNGKAITRSLSDRFGFLNLYSSCKRTCGVSESIVY 180

Query: 181 LPRTPRSSFDLLNQRTGG 193
           LPRTPRSSFDLLNQR+GG
Sbjct: 181 LPRTPRSSFDLLNQRSGG 196

[Close]

BLAST of Carg22861 vs. ExPASy TrEMBL
Match: A0A5D3C8I6 (Trinucleotide repeat-containing gene 18 protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001240 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 6.2e-79
Identity = 161/195 (82.56%), Postives = 174/195 (89.23%), Query Frame = 0


Query: 1   MFQSSRRSHSFSSSSSSSLSSSSSSSSSRGSCYFPNNSPFSAAATPVRTFSGSIPFSWEH 60
           MFQSSRR+HSFSSSSS+SLSSSSSSSSSRGS YFP  SPFSA+ATP+R+FSG+IPFSWEH
Sbjct: 1   MFQSSRRTHSFSSSSSNSLSSSSSSSSSRGSYYFPGESPFSASATPIRSFSGNIPFSWEH 60

Query: 61  LPGIPKKQSPARLRRDSASPLTSLLPLPPNSSTQPSSKRLGFQDWRKSNCQYSQRDPFFD 120
           LPGIPKKQSPARLRR SASPL+SLLPLPPNS+T  SSKR GFQDWRKSN Q  QRDPFFD
Sbjct: 61  LPGIPKKQSPARLRRGSASPLSSLLPLPPNSTTLSSSKRFGFQDWRKSNRQNPQRDPFFD 120

Query: 121 AFIECSKEP---AAATELWRGDSNGKTVSRSLSDRFGFMNLYSSCKRTCSVSESIVYLPR 180
           AF+ECSKEP   A   ELW G SNGK ++RSLSDRFGF+NLYSSCKRTC VSESIVYLPR
Sbjct: 121 AFLECSKEPTNAAVDAELWSGASNGKAITRSLSDRFGFLNLYSSCKRTCGVSESIVYLPR 180

Query: 181 TPRSSFDLLNQRTGG 193
           TP SSFDLLNQR+GG
Sbjct: 181 TPTSSFDLLNQRSGG 195

[Close]

BLAST of Carg22861 vs. ExPASy TrEMBL
Match: A0A1S3B2H5 (uncharacterized protein LOC103485423 OS=Cucumis melo OX=3656 GN=LOC103485423 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 6.2e-79
Identity = 161/195 (82.56%), Postives = 174/195 (89.23%), Query Frame = 0


Query: 1   MFQSSRRSHSFSSSSSSSLSSSSSSSSSRGSCYFPNNSPFSAAATPVRTFSGSIPFSWEH 60
           MFQSSRR+HSFSSSSS+SLSSSSSSSSSRGS YFP  SPFSA+ATP+R+FSG+IPFSWEH
Sbjct: 1   MFQSSRRTHSFSSSSSNSLSSSSSSSSSRGSYYFPGESPFSASATPIRSFSGNIPFSWEH 60

Query: 61  LPGIPKKQSPARLRRDSASPLTSLLPLPPNSSTQPSSKRLGFQDWRKSNCQYSQRDPFFD 120
           LPGIPKKQSPARLRR SASPL+SLLPLPPNS+T  SSKR GFQDWRKSN Q  QRDPFFD
Sbjct: 61  LPGIPKKQSPARLRRGSASPLSSLLPLPPNSTTLSSSKRFGFQDWRKSNRQNPQRDPFFD 120

Query: 121 AFIECSKEP---AAATELWRGDSNGKTVSRSLSDRFGFMNLYSSCKRTCSVSESIVYLPR 180
           AF+ECSKEP   A   ELW G SNGK ++RSLSDRFGF+NLYSSCKRTC VSESIVYLPR
Sbjct: 121 AFLECSKEPTNAAVDAELWSGASNGKAITRSLSDRFGFLNLYSSCKRTCGVSESIVYLPR 180

Query: 181 TPRSSFDLLNQRTGG 193
           TP SSFDLLNQR+GG
Sbjct: 181 TPTSSFDLLNQRSGG 195

[Close]

BLAST of Carg22861 vs. ExPASy TrEMBL
Match: A0A6J1JTM6 (uncharacterized protein LOC111487739 OS=Cucurbita maxima OX=3661 GN=LOC111487739 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 1.1e-70
Identity = 156/200 (78.00%), Postives = 167/200 (83.50%), Query Frame = 0


Query: 1   MFQSSRRSHSFSSSSSSSLSSSSSSSSSRGSCYFPNNSPFSAAATPVRTFSGSIPFSWEH 60
           MFQSSRR+ SFSSSSS   SSSSSSSSSRGS YFP++SP S AATP+R+FSGSIPFSWE+
Sbjct: 1   MFQSSRRTRSFSSSSS---SSSSSSSSSRGSYYFPDDSPLS-AATPIRSFSGSIPFSWEY 60

Query: 61  LPGIPKKQSPARLRRDSASPLTSLLPLPPNSSTQPSSKRLGFQDWRKSNCQYSQRDPFFD 120
           LPGIPKKQSPARLR DSASPLT LLPLPP S+  PSSKR GF DWRKSN Q SQRDPFFD
Sbjct: 61  LPGIPKKQSPARLRLDSASPLTFLLPLPPISTALPSSKRFGFHDWRKSNRQNSQRDPFFD 120

Query: 121 AFIECSKEPAAAT--------ELWRGDSNGKTVSRSLSDRFGFMNLYSSCKRTCSVSESI 180
           AF+ECSKEP+AAT        ELW   SNGK VSRSLSDRFGF+N YSSCKRTCSVSESI
Sbjct: 121 AFVECSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPYSSCKRTCSVSESI 180

Query: 181 VYLPRTPRSSFDLLNQRTGG 193
           VY PR  RSSFDLLN R+GG
Sbjct: 181 VYRPRRGRSSFDLLNHRSGG 196

[Close]

BLAST of Carg22861 vs. ExPASy TrEMBL
Match: A0A6J1GNZ5 (uncharacterized protein LOC111456137 OS=Cucurbita moschata OX=3662 GN=LOC111456137 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 4.0e-70
Identity = 156/200 (78.00%), Postives = 166/200 (83.00%), Query Frame = 0


Query: 1   MFQSSRRSHSFSSSSSSSLSSSSSSSSSRGSCYFPNNSPFSAAATPVRTFSGSIPFSWEH 60
           MFQSSRR+ SFSSSS S  SSSSSSSSSRGS YFP++SP S AATP+R+FSGSIPFSWE+
Sbjct: 1   MFQSSRRTRSFSSSSPS--SSSSSSSSSRGSYYFPDDSPLS-AATPIRSFSGSIPFSWEY 60

Query: 61  LPGIPKKQSPARLRRDSASPLTSLLPLPPNSSTQPSSKRLGFQDWRKSNCQYSQRDPFFD 120
           LPGIPKKQSPARLR DSASPLTSLLPLPP S+T PSSKR GF DWRKSN Q SQRDPFFD
Sbjct: 61  LPGIPKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQNSQRDPFFD 120

Query: 121 AFIECSKEPAAAT--------ELWRGDSNGKTVSRSLSDRFGFMNLYSSCKRTCSVSESI 180
           AF+ECSKEP+AAT        ELW   SNGK VSRSLSDRFGF+N  SSCKRTC VSESI
Sbjct: 121 AFVECSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPNSSCKRTCGVSESI 180

Query: 181 VYLPRTPRSSFDLLNQRTGG 193
           VY PR  RSSFDLLN R GG
Sbjct: 181 VYRPRRGRSSFDLLNHRNGG 197

[Close]

BLAST of Carg22861 vs. ExPASy TrEMBL
Match: A0A6J1DE38 (uncharacterized protein LOC111020211 OS=Momordica charantia OX=3673 GN=LOC111020211 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 3.2e-67
Identity = 149/191 (78.01%), Postives = 164/191 (85.86%), Query Frame = 0


Query: 1   MFQSSRRSHSFSSSSSSSLSSSSSSSSSRGSCYFPNNSPFSAAATPVRTFSGSIPFSWEH 60
           MFQSSRR+HSFSSS     SS SSSSSSRGS YFP++SP S +ATP+R+FSG+IPFSWEH
Sbjct: 1   MFQSSRRTHSFSSS-----SSLSSSSSSRGSYYFPDDSPLS-SATPIRSFSGAIPFSWEH 60

Query: 61  LPGIPKK-QSPARLRRDSASPLTSLLPLPPNSSTQPSSKRLGFQDWRKSNCQYSQRDPFF 120
           LPGIPKK QSPARLR+DSASPLTSLLPLPPNS+T PSSKR GFQ+WRKSN   SQRDPFF
Sbjct: 61  LPGIPKKLQSPARLRQDSASPLTSLLPLPPNSTTPPSSKRFGFQEWRKSNRHNSQRDPFF 120

Query: 121 DAFIECSKEPA-AATELWR---GDSNGKTVSRSLSDRFGFMNLYSSCKRTCSVSESIVYL 180
           DAF+ECSK+ A AA ELW    G + GK +SRSLSDRFGF+NLYSSCKRTC VSESIV L
Sbjct: 121 DAFVECSKDRASAAAELWSGGGGSNGGKAISRSLSDRFGFLNLYSSCKRTCGVSESIVCL 180

Query: 181 PRTPRSSFDLL 187
           PRTPRSSFDLL
Sbjct: 181 PRTPRSSFDLL 185

[Close]

BLAST of Carg22861 vs. TAIR 10
Match: AT1G71970.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22680.1); Has 58 Blast hits to 58 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 102.8 bits (255), Expect = 3.1e-22
Identity = 87/206 (42.23%), Postives = 115/206 (55.83%), Query Frame = 0


Query: 4   SSRRSHSFSSSSSSSLSSSSSSSSSRGSCYFPNNSPFSAAATPVRTFSGSIPFSWEHLPG 63
           SSRR    S SSSSS SS SS SSS  S  FP +SP ++ ATP+R     +PFSWE LPG
Sbjct: 25  SSRR----SLSSSSSFSSFSSCSSS--SLVFPGDSPLNSPATPLRLL--GVPFSWEQLPG 84

Query: 64  IPKKQSPARLRRDSASPLTSLLPLPPN---SSTQPSSKRLGFQDWRKSNCQYSQRDPFFD 123
            PK  S     R +      LLPLPP+   S      K       +K++   + +DPF  
Sbjct: 85  KPKDYSHRLNNRRNNESSNLLLPLPPHRNISFPATGKKPKPNNSSKKNSFPVTGKDPFAA 144

Query: 124 AFIECSKEPAAATE-------------LWRGDSNG--KTVSR-SLSDRFGFMNLYSSCKR 183
           A +ECSK+    ++              +RG+S G  K +S+ S+ DRFG +NLY SC+R
Sbjct: 145 ALLECSKDEGTNSDNDDDVDGVEDVDRRFRGNSGGSSKVLSKNSIGDRFGLVNLYGSCRR 204

Query: 184 TCSVSESIVYLPRTPR-SSFDLLNQR 190
           TC+V+ESIVYLPR  + +S+D L  R
Sbjct: 205 TCAVTESIVYLPRARKAASYDNLLPR 222

[Close]

BLAST of Carg22861 vs. TAIR 10
Match: AT1G22680.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71970.1); Has 44 Blast hits to 44 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-19
Identity = 81/189 (42.86%), Postives = 107/189 (56.61%), Query Frame = 0


Query: 5   SRRSHSFSSSSSSSLSSSSS-SSSSRGSCYFPNNSPFSAAATPVRTFSGSIPFSWEHLPG 64
           +RRS+S   SS+ ++S+  S SSSS  S  F  NSP    ATP+      IPFSWE LPG
Sbjct: 12  TRRSNSVKFSSTVNISTRRSLSSSSSNSLLFSGNSP----ATPLHPL--GIPFSWEKLPG 71

Query: 65  IPKKQSPARLRRDSASPLTSLLPLPPNSSTQPSSKRLGFQDWRKSNCQYSQRDPFFDAFI 124
            PK+ S  R        L++LLPLPP+ S    + R      +K+    + RDPF  A +
Sbjct: 72  KPKEFSYHRKNES----LSNLLPLPPHWSNHSPNTRC-----KKNTSPAAMRDPFMAALV 131

Query: 125 ECSKEPAAATELWRGDSNGKTVSRSLSDRFGFMNLYSSCKRTCSVSESIVYLPRTPRSSF 184
           ECSK      E   G+S  K + +S S   G +NLYSSC+R C VSESIVYLP++  +S+
Sbjct: 132 ECSKGATTDGEHTGGESR-KVLRKSRS--IGLLNLYSSCRRACEVSESIVYLPKS-IASY 181

Query: 185 DLLNQRTGG 193
           D L+  T G
Sbjct: 192 DHLHLSTRG 181

The following BLAST results are available for this feature:

BLAST of Carg22861 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015908.1	2.5e-98	100.00	hypothetical protein SDJN02_21012, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023549797.1	1.4e-96	97.96	putative protein TPRXL [Cucurbita pepo subsp. pepo]	[more]
KAG6578332.1	8.8e-96	96.95	hypothetical protein SDJN03_22780, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008441227.1	1.3e-78	82.56	PREDICTED: uncharacterized protein LOC103485423 [Cucumis melo] >KAA0037005.1 tri...	[more]
XP_038885392.1	8.3e-78	82.32	uncharacterized protein LOC120075791 [Benincasa hispida]	[more]

BLAST of Carg22861 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg22861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C8I6	6.2e-79	82.56	Trinucleotide repeat-containing gene 18 protein-like protein OS=Cucumis melo var...	[more]
A0A1S3B2H5	6.2e-79	82.56	uncharacterized protein LOC103485423 OS=Cucumis melo OX=3656 GN=LOC103485423 PE=...	[more]
A0A6J1JTM6	1.1e-70	78.00	uncharacterized protein LOC111487739 OS=Cucurbita maxima OX=3661 GN=LOC111487739...	[more]
A0A6J1GNZ5	4.0e-70	78.00	uncharacterized protein LOC111456137 OS=Cucurbita moschata OX=3662 GN=LOC1114561...	[more]
A0A6J1DE38	3.2e-67	78.01	uncharacterized protein LOC111020211 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of Carg22861 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G71970.1	3.1e-22	42.23	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G22680.1	1.1e-19	42.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007789	Protein of unknown function DUF688	PFAM	PF05097	DUF688	coord: 3..95 e-value: 1.7E-5 score: 24.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR33696:SF1	T22J18.15	coord: 3..181
None	No IPR available	PANTHER	PTHR33696	T22J18.15-RELATED	coord: 3..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22861-RA	Carg22861-RA	mRNA