Carg22827 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22827
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ferredoxin
Location	Carg_Chr19: 5238671 .. 5242405 (-)
RNA-Seq Expression	Carg22827
Synteny	Carg22827

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAACCGAAACTCACTCGCCGGAGCTTCAAAAATCAACCTCACCAATGGACGTTCTTCTTCCCTGCACTTCCTTCCGTTCTGTAAATTTGAAGCCAAATTCCTTCCGAAGATTCGTCTCGACAAATCGAAACGGTCGGTTCTCTGACATCTTGAAATGTCGCCGAAAAACGACGTCAGCTGAGCTTCAGGCAGCTGTCGATGTCGCAGTCCAGACCGAAAACGGTTCTCCTTCGATTCCCACTCATAAGGTCACCGTTCACGATAGAGAGAGAGGCGTTGTTCATGAATTCGTTGTTCCTGAGGTACGGCGCCATTTTCAGTTTGCTCTTGTAGAAATGGAGCGAACATAAGTCCTTTTTCTTTTTATGTGATTTGTATTGCGTCGATGAGATTTTTTTCGCCTTTTGAATGAGATTTCAACTTTGTAGATCGATTTAACGCGTTTCTCCTTGTTTACATATTGTTGTGATCTGACTTTGAAGAGTATAAATTGATTTGAGTTTGGGAATTCGAAGTTCTGAACTCTCTTTTTATTTCTAGTGTGTGCCAGTAGATGTTCTCTTATTGTTTAATGGTAATGACTTATGAGGCGCGGGTAATCGATTAAAAAATTGCAGGATCAGTACATATTACACACTGCCGAAGCTCAGAGCATATCTCTTCCTTTTGCTTGCAGGCACGGTATTGTTCCCTAATTCACCAATTATTGATGAACTTCTCACATTCTTGTTCTTTGTCGTGTTTATAATTTATGTCAATGAGTAATACCATTGATAATAGAAAGTATGGGCGTTGTATCAGTAATTTTCACTTGTTTGCTAGTGATCTTTGTCACTTGAAAGCTGAAATTTGTCATAAAATATGTAGTTACTTCTGAAGATCATGGACTTATTAACCCATAGACTCATTTTGGTAAGCATATGCATCAAAATGGGATTCTAATGCATGACGTTTTCGATAAATTAGCGCCACGATTTGAACAAAGCACACACATCCATAGAAAATCGAACTATAATTTTGATACATTTTAATGATTTACTTGCATTAGGTGCCATGTCAAAGAATGTAACTGTACCTTCATGGTCACTCTGTGTAAGAACCCAAATAACAGAATGGTTTACGACCAGACAAAAATCATTTACATTGAAAAAGTAGAACTAAACTTTTTCCCCTGCCCTTCTTTTGACTGGTACTTCCTGCAAAGAAGCCATTTTATATGATTCCTTTCGATCCCCATTGTTGGTTCATATGCCATATTCTGAAAATATTTGTTTCATCACAGGCTGTTGCACTAGTTGTGCTGTTCGAATAAAATCAGGCCAAATTAGACAGCCAGAAGCCCTTGGAATATCTGCTGAGTTGAAATCAAAGGCAATTTGTTTTACTTATTTCTGGACTTATTATTGTTTTTTGTTTTGGGAATAAATTTCTATCAAATGAAGAGGATGCTGTCGTACTTTAATGTTTTCCATTCAGAAATCACATGATTTCTATGTTGAATTTTCTTAAATATCAATTGATTCATTTTCTGGGGAAAAGCCATGAAGCAAAATCTGAGATTATGCATTGTGATGCTTTAGTAAACTAAAACTGGTACTCATTCTAGATATGAATTTTGGGTTTGTTAATCTTAGTTTTTTACCAGGTGAGCATGGAAAAGTTATTTAGTATAGGTATGTCTAGGTATGGTTGAAGCAACTGCTGCTCATTGAGGATGAGAATAACGTAGTTGAGTTTGTATTCTACAGGTTACAGGTTAGGAAAATGAAGAATAATCAAGACCTGGTCCTAGAATGCTTCTGTTATTGTTATTATTATTTAGTTGGATGAGTGGTTTATTGTTATGTTTATAAGCAACGGCTAGGAATCACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAACTCTCATGTCTTCGCTTTTGGCTTCCCCAAAAAGCCTCATACCAATGGAGATATATTCGTTACTTATAAACCCATGGTTGTTCCCTAAATTAGTCAATGTGGGACTCCCTCCCAGCAATTCTCCTATAGACTCTTTCTTTAGAGCCCTCAAACAAAGTTAGCCCTTTGTTCGACACTTGAGTCACTTTTGACTACACCTTCGAAGCTCACAACTTCTTTGTTCGATATTTGAGGATTCTATTGACATGGCTAAATTAAGGGCACGACTCTAATACCATGTTAGGAATCACGACCCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGTTTTTGGCTTCTCCAAAAGGCCTCATACCAATGGAGATGTATTCCTTACTTTTAAACTCATGATCATTCTCTAAATTAGCCGTGGGACTCCCTCCCAACAATCCTCAACAGTAGCTACATGAATTATTCTCTTAAGAGTTACTTCTTTAAAGCACTTATTTGTCATGTTTGAGCATAGTTAGAATTGGAGTAGTGCCAGTGCAGGTCTCGCTTACAGGATTAGTAGTTTTTTTTGGCACAGATTATAGAAAAGGATAAAAGAAGAAGAATACCGCAAATCATATATCTAATCATCTCATTTAAATGCATTTCCGATTGAAATTCGTTATTGTGCTCCACACTGCAGGGATATGCACTTCTTTGCGTAGGTTTCCCAACCTCAGATGTTGAAGTAGAAACACAAGATGAGGACGAGGTATGGTTTCAAATTTCAATTTGAGAAATGAAGCAAATTTCTTTAGTTTTATAATTACAAGCTTGATAAAGTCTATTTTCCCCTCGTAGCTCTCTCAGTGAGCCAAATTTACATGTTAACCAATCATTGATACTAAAGTTGGAATTGGTTAAATCAAAAGTTGTCTGTCTGGCCTAACTTTATATGTTGGGCATTTTGGAGTCCTATGATCATTTTTCATGCAACGATTCTCGTGATGGAGGAATGGATGGGGTCATCGTTCCAAAACTCGAAGTCAAAACGTGAAAATGTTTGATAAAATGTTGCTCTGTTTGTGACTCTCTTTAAACAATCCCCTACGCATGCAGGTATATTGGCTTCAATTTGGAAGATACTTCGCTCGGGGGCCAATTGTAAGTTCTTTACTTTTAAATCTACCAAAGCTTAGTGGGAGATGATAAAAGTAAATCTAAATTATCTTTGTTACAAGTTGTTTTAAACGATTTATTAAACTGTCCAGGAGAGAGATGACTATGCTCTAGAGTTGGCCATGGCTGATGAATAAACTAAACTATTGATCCTGGAGGATCCATGGACAGAGACATGAATGTACGAATCCTGTAGAGGAGCATTACTCTGCTCAAACCCTTCATCTTCTTTCTTTATCTGTATGGTTTATGACTGTTAATATCATAGGAGGAGAATATAAGAATTACATGACATTCTCTTTTATCACTAACCCTTCTCTTTATCCTGTTTGATGGGAAGTTTGTGTACTTCTTGAACACTAAAAATGAAGGCAGTTTATTTTGGAGGAATGAAAATACTTTTGATGGGGGGAGGGTTTAGTTTTAGAACCTGAATTCAAATAGCCAGATTATATTCTGATTAATGTGTTCTTCATGGCATTGTCATGTTCCAATTAGAAATTGAGGATCAAGTTCATACCTTAGTCTTAGAGTTTTTGGATTTGATTCAGGTTGGTATATATACTCTTAAAATATTTACTTTTATCCATGTCAAAATGGTCACTTTTAAAAAATACCGAGATCAAACGAACATTTTGGAAGTAGAGAGACC

mRNA sequence

CACAACCGAAACTCACTCGCCGGAGCTTCAAAAATCAACCTCACCAATGGACGTTCTTCTTCCCTGCACTTCCTTCCGTTCTGTAAATTTGAAGCCAAATTCCTTCCGAAGATTCGTCTCGACAAATCGAAACGGTCGGTTCTCTGACATCTTGAAATGTCGCCGAAAAACGACGTCAGCTGAGCTTCAGGCAGCTGTCGATGTCGCAGTCCAGACCGAAAACGGTTCTCCTTCGATTCCCACTCATAAGGTCACCGTTCACGATAGAGAGAGAGGCGTTGTTCATGAATTCGTTGTTCCTGAGGATCAGTACATATTACACACTGCCGAAGCTCAGAGCATATCTCTTCCTTTTGCTTGCAGGCACGGCTGTTGCACTAGTTGTGCTGTTCGAATAAAATCAGGCCAAATTAGACAGCCAGAAGCCCTTGGAATATCTGCTGAGTTGAAATCAAAGGCAATTTGTTTCCCAACCTCAGATGTTGAAGTAGAAACACAAGATGAGGACGAGGTATATTGGCTTCAATTTGGAAGATACTTCGCTCGGGGGCCAATTGAGAGAGATGACTATGCTCTAGAGTTGGCCATGGCTGATGAATAAACTAAACTATTGATCCTGGAGGATCCATGGACAGAGACATGAATGTACGAATCCTGTAGAGGAGCATTACTCTGCTCAAACCCTTCATCTTCTTTCTTTATCTGTATGGTTTATGACTGTTAATATCATAGGAGGAGAATATAAGAATTACATGACATTCTCTTTTATCACTAACCCTTCTCTTTATCCTGTTTGATGGGAAGTTTGTGTACTTCTTGAACACTAAAAATGAAGGCAGTTTATTTTGGAGGAATGAAAATACTTTTGATGGGGGGAGGGTTTAGTTTTAGAACCTGAATTCAAATAGCCAGATTATATTCTGATTAATGTGTTCTTCATGGCATTGTCATGTTCCAATTAGAAATTGAGGATCAAGTTCATACCTTAGTCTTAGAGTTTTTGGATTTGATTCAGGTTGGTATATATACTCTTAAAATATTTACTTTTATCCATGTCAAAATGGTCACTTTTAAAAAATACCGAGATCAAACGAACATTTTGGAAGTAGAGAGACC

Coding sequence (CDS)

ATGGACGTTCTTCTTCCCTGCACTTCCTTCCGTTCTGTAAATTTGAAGCCAAATTCCTTCCGAAGATTCGTCTCGACAAATCGAAACGGTCGGTTCTCTGACATCTTGAAATGTCGCCGAAAAACGACGTCAGCTGAGCTTCAGGCAGCTGTCGATGTCGCAGTCCAGACCGAAAACGGTTCTCCTTCGATTCCCACTCATAAGGTCACCGTTCACGATAGAGAGAGAGGCGTTGTTCATGAATTCGTTGTTCCTGAGGATCAGTACATATTACACACTGCCGAAGCTCAGAGCATATCTCTTCCTTTTGCTTGCAGGCACGGCTGTTGCACTAGTTGTGCTGTTCGAATAAAATCAGGCCAAATTAGACAGCCAGAAGCCCTTGGAATATCTGCTGAGTTGAAATCAAAGGCAATTTGTTTCCCAACCTCAGATGTTGAAGTAGAAACACAAGATGAGGACGAGGTATATTGGCTTCAATTTGGAAGATACTTCGCTCGGGGGCCAATTGAGAGAGATGACTATGCTCTAGAGTTGGCCATGGCTGATGAATAA

Protein sequence

MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTENGSPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSGQIRQPEALGISAELKSKAICFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDYALELAMADE

Homology

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BLAST of Carg22827 vs. NCBI nr
Match: KAG7011534.1 (petF2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 373.2 bits (957), Expect = 1.3e-99
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTENG 60
           MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTENG
Sbjct: 1   MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTENG 60

Query: 61  SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG 120
           SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG
Sbjct: 61  SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG 120

Query: 121 QIRQPEALGISAELKSKAICFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDYALELA 180
           QIRQPEALGISAELKSKAICFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDYALELA
Sbjct: 121 QIRQPEALGISAELKSKAICFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDYALELA 180

Query: 181 MADE 185
           MADE
Sbjct: 181 MADE 184

[Close]

BLAST of Carg22827 vs. NCBI nr
Match: XP_022952427.1 (uncharacterized protein LOC111455118 [Cucurbita moschata] >XP_022952429.1 uncharacterized protein LOC111455118 [Cucurbita moschata] >XP_022952430.1 uncharacterized protein LOC111455118 [Cucurbita moschata])

HSP 1 Score: 360.5 bits (924), Expect = 8.4e-96
Identity = 181/189 (95.77%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 1   MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTENG 60
           MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTENG
Sbjct: 1   MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTENG 60

Query: 61  SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG 120
           SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG
Sbjct: 61  SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG 120

Query: 121 QIRQPEALGISAELKSK-----AICFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY 180
           QIRQPEALGISAELKSK      + FPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY
Sbjct: 121 QIRQPEALGISAELKSKGYALLCVGFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY 180

Query: 181 ALELAMADE 185
           ALELAMADE
Sbjct: 181 ALELAMADE 189

[Close]

BLAST of Carg22827 vs. NCBI nr
Match: KAG6571846.1 (Ferredoxin C 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 359.4 bits (921), Expect = 1.9e-95
Identity = 180/189 (95.24%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 1   MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTENG 60
           MDVLLPCTSFRSVNLKPNSFR+FVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTENG
Sbjct: 186 MDVLLPCTSFRSVNLKPNSFRKFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTENG 245

Query: 61  SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG 120
           SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG
Sbjct: 246 SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG 305

Query: 121 QIRQPEALGISAELKSK-----AICFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY 180
           QIRQPEALGISAELKSK      + FPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY
Sbjct: 306 QIRQPEALGISAELKSKGYALLCVGFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY 365

Query: 181 ALELAMADE 185
           ALELAMADE
Sbjct: 366 ALELAMADE 374

[Close]

BLAST of Carg22827 vs. NCBI nr
Match: XP_022972000.1 (uncharacterized protein LOC111470650 [Cucurbita maxima] >XP_022972001.1 uncharacterized protein LOC111470650 [Cucurbita maxima])

HSP 1 Score: 358.2 bits (918), Expect = 4.2e-95
Identity = 179/189 (94.71%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 1   MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTENG 60
           MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQT+NG
Sbjct: 1   MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTDNG 60

Query: 61  SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG 120
           SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG
Sbjct: 61  SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG 120

Query: 121 QIRQPEALGISAELKSK-----AICFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY 180
           QIRQPEALGISAELK+K      + FPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY
Sbjct: 121 QIRQPEALGISAELKAKGYALLCVGFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY 180

Query: 181 ALELAMADE 185
           ALELAMADE
Sbjct: 181 ALELAMADE 189

[Close]

BLAST of Carg22827 vs. NCBI nr
Match: XP_023511494.1 (uncharacterized protein LOC111776305 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023511495.1 uncharacterized protein LOC111776305 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023511496.1 uncharacterized protein LOC111776305 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 353.6 bits (906), Expect = 1.0e-93
Identity = 177/189 (93.65%), Postives = 181/189 (95.77%), Query Frame = 0


Query: 1   MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTENG 60
           MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTS+ELQAAV VAVQT++G
Sbjct: 1   MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSSELQAAVGVAVQTDSG 60

Query: 61  SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG 120
           SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG
Sbjct: 61  SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG 120

Query: 121 QIRQPEALGISAELKSK-----AICFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY 180
           QIRQPEALGISAELKSK      + FPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY
Sbjct: 121 QIRQPEALGISAELKSKGYALLCVGFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY 180

Query: 181 ALELAMADE 185
           ALELAMADE
Sbjct: 181 ALELAMADE 189

[Close]

BLAST of Carg22827 vs. ExPASy Swiss-Prot
Match: Q9C7Y4 (Ferredoxin C 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FDC2 PE=2 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.7e-62
Identity = 121/190 (63.68%), Postives = 146/190 (76.84%), Query Frame = 0


Query: 1   MDVLLPCTSFRSVNLKPNSF-RRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTEN 60
           M ++LPCT   S+  K     RR+++  R G           T + E +  V+V+  ++ 
Sbjct: 1   MALILPCTFCTSLQKKNFPINRRYITNFRRG---------ATTATCEFRIPVEVSTPSDR 60

Query: 61  GSPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKS 120
           GS  +P+HKVTVHDR+RGVVHEF VPEDQYILH+AE+Q+ISLPFACRHGCCTSCAVR+KS
Sbjct: 61  GSLVVPSHKVTVHDRQRGVVHEFEVPEDQYILHSAESQNISLPFACRHGCCTSCAVRVKS 120

Query: 121 GQIRQPEALGISAELKSK-----AICFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDD 180
           G++RQP+ALGISAELKS+      + FPTSD+EVETQDEDEVYWLQFGRYFARGPIERDD
Sbjct: 121 GELRQPQALGISAELKSQGYALLCVGFPTSDLEVETQDEDEVYWLQFGRYFARGPIERDD 180

Query: 181 YALELAMADE 185
           YALELAM DE
Sbjct: 181 YALELAMGDE 181

[Close]

BLAST of Carg22827 vs. ExPASy Swiss-Prot
Match: P08451 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=petF2 PE=3 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 2.9e-14
Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = 0


Query: 76  RGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSGQIRQPEALGISAELK 135
           +G    F    DQ +L +A+A  + LP +C  G CT+CA RI SG++ QP+A+G+  E  
Sbjct: 11  QGQSQTFTADSDQSVLDSAQAAGVDLPASCLTGVCTTCAARILSGEVDQPDAMGVGPEPA 70

Query: 136 SK-----AICFPTSDVEVETQDEDEVYWLQFGR 164
            +      + +P SD+++ET  EDE+Y LQFG+
Sbjct: 71  KQGYTLLCVAYPRSDLKIETHKEDELYALQFGQ 103

[Close]

BLAST of Carg22827 vs. ExPASy Swiss-Prot
Match: P0A3C7 (Ferredoxin-1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=petF PE=1 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 3.2e-13
Identity = 38/97 (39.18%), Postives = 56/97 (57.73%), Query Frame = 0


Query: 66  THKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSGQIRQP 125
           T KVT+ +   G  HE  VP+D+YIL  AE Q   LPF+CR G C++CA ++ SG + Q 
Sbjct: 3   TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQS 62

Query: 126 EAL-----GISAELKSKAICFPTSDVEVETQDEDEVY 158
           +        I A      + +PTSDV ++T  E+++Y
Sbjct: 63  DQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 99

[Close]

BLAST of Carg22827 vs. ExPASy Swiss-Prot
Match: P0A3C8 (Ferredoxin-1 OS=Nostoc sp. (strain ATCC 29151 / PCC 7119) OX=1168 GN=petF PE=1 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 3.2e-13
Identity = 38/97 (39.18%), Postives = 56/97 (57.73%), Query Frame = 0


Query: 66  THKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSGQIRQP 125
           T KVT+ +   G  HE  VP+D+YIL  AE Q   LPF+CR G C++CA ++ SG + Q 
Sbjct: 3   TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQS 62

Query: 126 EAL-----GISAELKSKAICFPTSDVEVETQDEDEVY 158
           +        I A      + +PTSDV ++T  E+++Y
Sbjct: 63  DQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 99

[Close]

BLAST of Carg22827 vs. ExPASy Swiss-Prot
Match: P00253 (Ferredoxin OS=Desmonostoc muscorum OX=1179 PE=1 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-13
Identity = 37/97 (38.14%), Postives = 56/97 (57.73%), Query Frame = 0


Query: 66  THKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSGQIRQP 125
           T KVT+ +   G  HE  VP+D+YIL  AE +   LPF+CR G C++CA ++ SG + Q 
Sbjct: 3   TFKVTLINEAEGTKHEIEVPDDEYILDAAEEEGYDLPFSCRAGACSTCAGKLVSGTVDQS 62

Query: 126 EAL-----GISAELKSKAICFPTSDVEVETQDEDEVY 158
           +        I A      + +PTSDV ++T  E+++Y
Sbjct: 63  DQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 99

[Close]

BLAST of Carg22827 vs. ExPASy TrEMBL
Match: A0A6J1GKE0 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111455118 PE=3 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 4.1e-96
Identity = 181/189 (95.77%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 1   MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTENG 60
           MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTENG
Sbjct: 1   MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTENG 60

Query: 61  SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG 120
           SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG
Sbjct: 61  SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG 120

Query: 121 QIRQPEALGISAELKSK-----AICFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY 180
           QIRQPEALGISAELKSK      + FPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY
Sbjct: 121 QIRQPEALGISAELKSKGYALLCVGFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY 180

Query: 181 ALELAMADE 185
           ALELAMADE
Sbjct: 181 ALELAMADE 189

[Close]

BLAST of Carg22827 vs. ExPASy TrEMBL
Match: A0A6J1I4R5 (Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111470650 PE=3 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.0e-95
Identity = 179/189 (94.71%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 1   MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTENG 60
           MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQT+NG
Sbjct: 1   MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTDNG 60

Query: 61  SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG 120
           SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG
Sbjct: 61  SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG 120

Query: 121 QIRQPEALGISAELKSK-----AICFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY 180
           QIRQPEALGISAELK+K      + FPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY
Sbjct: 121 QIRQPEALGISAELKAKGYALLCVGFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY 180

Query: 181 ALELAMADE 185
           ALELAMADE
Sbjct: 181 ALELAMADE 189

[Close]

BLAST of Carg22827 vs. ExPASy TrEMBL
Match: A0A6J1ESD7 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111437299 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.6e-87
Identity = 167/189 (88.36%), Postives = 173/189 (91.53%), Query Frame = 0


Query: 1   MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTENG 60
           MDVLLPCTSFRSVNLKP S R F+STNRN RFSD+LKCRRKT S ELQA VDVA +T++G
Sbjct: 1   MDVLLPCTSFRSVNLKPESSRSFLSTNRNRRFSDLLKCRRKTISTELQATVDVAGRTDDG 60

Query: 61  SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG 120
           S SIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG
Sbjct: 61  SASIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG 120

Query: 121 QIRQPEALGISAELKSK-----AICFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY 180
           QIRQPEALGISAELKSK      + FPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY
Sbjct: 121 QIRQPEALGISAELKSKGYALLCVGFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY 180

Query: 181 ALELAMADE 185
           ALELAMADE
Sbjct: 181 ALELAMADE 189

[Close]

BLAST of Carg22827 vs. ExPASy TrEMBL
Match: A0A5A7TAG8 (Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G001210 PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 5.0e-86
Identity = 163/189 (86.24%), Postives = 172/189 (91.01%), Query Frame = 0


Query: 1   MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTENG 60
           MDVLLP TSFR+VN+K  SFR F STNRN RFSD LKCRRKTTS ELQAAVDVA + +NG
Sbjct: 1   MDVLLPSTSFRTVNMKSESFRTFFSTNRNRRFSDTLKCRRKTTSTELQAAVDVAARADNG 60

Query: 61  SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG 120
           SPSIP+HKVTVHDRERGVVHEFVVPEDQYILHTAEAQSI+LPFACRHGCCTSCAVRIKSG
Sbjct: 61  SPSIPSHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSITLPFACRHGCCTSCAVRIKSG 120

Query: 121 QIRQPEALGISAELKSK-----AICFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY 180
           +IRQPEALGISAELKSK      + FP+SDVEVETQDEDEVYWLQFGRYFARGPIERDDY
Sbjct: 121 EIRQPEALGISAELKSKGYALLCVGFPSSDVEVETQDEDEVYWLQFGRYFARGPIERDDY 180

Query: 181 ALELAMADE 185
           ALELAMADE
Sbjct: 181 ALELAMADE 189

[Close]

BLAST of Carg22827 vs. ExPASy TrEMBL
Match: A0A1S3CQF2 (Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103503526 PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 5.0e-86
Identity = 163/189 (86.24%), Postives = 172/189 (91.01%), Query Frame = 0


Query: 1   MDVLLPCTSFRSVNLKPNSFRRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTENG 60
           MDVLLP TSFR+VN+K  SFR F STNRN RFSD LKCRRKTTS ELQAAVDVA + +NG
Sbjct: 1   MDVLLPSTSFRTVNMKSESFRTFFSTNRNRRFSDTLKCRRKTTSTELQAAVDVAARADNG 60

Query: 61  SPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSG 120
           SPSIP+HKVTVHDRERGVVHEFVVPEDQYILHTAEAQSI+LPFACRHGCCTSCAVRIKSG
Sbjct: 61  SPSIPSHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSITLPFACRHGCCTSCAVRIKSG 120

Query: 121 QIRQPEALGISAELKSK-----AICFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDY 180
           +IRQPEALGISAELKSK      + FP+SDVEVETQDEDEVYWLQFGRYFARGPIERDDY
Sbjct: 121 EIRQPEALGISAELKSKGYALLCVGFPSSDVEVETQDEDEVYWLQFGRYFARGPIERDDY 180

Query: 181 ALELAMADE 185
           ALELAMADE
Sbjct: 181 ALELAMADE 189

[Close]

BLAST of Carg22827 vs. TAIR 10
Match: AT1G32550.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 239.2 bits (609), Expect = 2.6e-63
Identity = 121/190 (63.68%), Postives = 146/190 (76.84%), Query Frame = 0


Query: 1   MDVLLPCTSFRSVNLKPNSF-RRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTEN 60
           M ++LPCT   S+  K     RR+++  R G           T + E +  V+V+  ++ 
Sbjct: 1   MALILPCTFCTSLQKKNFPINRRYITNFRRG---------ATTATCEFRIPVEVSTPSDR 60

Query: 61  GSPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKS 120
           GS  +P+HKVTVHDR+RGVVHEF VPEDQYILH+AE+Q+ISLPFACRHGCCTSCAVR+KS
Sbjct: 61  GSLVVPSHKVTVHDRQRGVVHEFEVPEDQYILHSAESQNISLPFACRHGCCTSCAVRVKS 120

Query: 121 GQIRQPEALGISAELKSK-----AICFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDD 180
           G++RQP+ALGISAELKS+      + FPTSD+EVETQDEDEVYWLQFGRYFARGPIERDD
Sbjct: 121 GELRQPQALGISAELKSQGYALLCVGFPTSDLEVETQDEDEVYWLQFGRYFARGPIERDD 180

Query: 181 YALELAMADE 185
           YALELAM DE
Sbjct: 181 YALELAMGDE 181

[Close]

BLAST of Carg22827 vs. TAIR 10
Match: AT1G32550.2 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 224.9 bits (572), Expect = 5.1e-59
Identity = 120/206 (58.25%), Postives = 144/206 (69.90%), Query Frame = 0


Query: 1   MDVLLPCTSFRSVNLKPNSF-RRFVSTNRNGRFSDILKCRRKTTSAELQAAVDVAVQTEN 60
           M ++LPCT   S+  K     RR+++  R G           T + E +  V+V+  ++ 
Sbjct: 1   MALILPCTFCTSLQKKNFPINRRYITNFRRG---------ATTATCEFRIPVEVSTPSDR 60

Query: 61  GSPSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKS 120
           GS  +P+HKVTVHDR+RGVVHEF   EDQYILH+AE+Q+ISLPFACRHGCCTSCAVR+KS
Sbjct: 61  GSLVVPSHKVTVHDRQRGVVHEF---EDQYILHSAESQNISLPFACRHGCCTSCAVRVKS 120

Query: 121 GQIRQPEALGISAELKSKAIC---------------------FPTSDVEVETQDEDEVYW 180
           G++RQP+ALGISAELKS+ I                      FPTSD+EVETQDEDEVYW
Sbjct: 121 GELRQPQALGISAELKSQRISSLDLIQCQKTYLTGYALLCVGFPTSDLEVETQDEDEVYW 180

Query: 181 LQFGRYFARGPIERDDYALELAMADE 185
           LQFGRYFARGPIERDDYALELAM DE
Sbjct: 181 LQFGRYFARGPIERDDYALELAMGDE 194

[Close]

BLAST of Carg22827 vs. TAIR 10
Match: AT1G10960.1 (ferredoxin 1 )

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-09
Identity = 29/76 (38.16%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 86  EDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSGQIRQPEALGISAELKSK-----AIC 145
           ED Y+L  AE   + LP++CR G C+SCA ++ SG I Q +   +  E  S+      + 
Sbjct: 72  EDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVA 131

Query: 146 FPTSDVEVETQDEDEV 157
           +PTSDV +ET  E+ +
Sbjct: 132 YPTSDVVIETHKEEAI 147

[Close]

BLAST of Carg22827 vs. TAIR 10
Match: AT2G27510.1 (ferredoxin 3 )

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-09
Identity = 30/86 (34.88%), Postives = 45/86 (52.33%), Query Frame = 0


Query: 77  GVVHEFVVPEDQYILHTAEAQSISLPFACRHGCCTSCAVRIKSGQIRQPEALGISAELKS 136
           G   EF V +DQYIL  AE   + LP++CR G C++CA +I SG + Q +   +      
Sbjct: 70  GQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLE 129

Query: 137 K-----AICFPTSDVEVETQDEDEVY 158
           K      + +P SD  + T  E E++
Sbjct: 130 KGYVLTCVAYPQSDCVIHTHKETELF 155

[Close]

BLAST of Carg22827 vs. TAIR 10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-08
Identity = 38/124 (30.65%), Postives = 60/124 (48.39%), Query Frame = 0


Query: 40  RKTTSAELQAAVDVAVQTENGS--PSIPTHKVTVHDRERGVVHEFVVPEDQYILHTAEAQ 99
           R   SA  Q+   +   T  G    ++ T+KV     E  +  E    +D Y+L  AE  
Sbjct: 26  RSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEGEL--EVECDDDVYVLDAAEEA 85

Query: 100 SISLPFACRHGCCTSCAVRIKSGQIRQPEALGISAELKSKAI-----CFPTSDVEVETQD 157
            I LP++CR G C+SCA ++ SG + Q +   +  E   +        +PTSDV +ET  
Sbjct: 86  GIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHK 145

The following BLAST results are available for this feature:

BLAST of Carg22827 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011534.1	1.3e-99	100.00	petF2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022952427.1	8.4e-96	95.77	uncharacterized protein LOC111455118 [Cucurbita moschata] >XP_022952429.1 unchar...	[more]
KAG6571846.1	1.9e-95	95.24	Ferredoxin C 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022972000.1	4.2e-95	94.71	uncharacterized protein LOC111470650 [Cucurbita maxima] >XP_022972001.1 uncharac...	[more]
XP_023511494.1	1.0e-93	93.65	uncharacterized protein LOC111776305 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]

BLAST of Carg22827 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C7Y4	3.7e-62	63.68	Ferredoxin C 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FDC2 PE=2 SV=1	[more]
P08451	2.9e-14	39.78	Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) O...	[more]
P0A3C7	3.2e-13	39.18	Ferredoxin-1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 G...	[more]
P0A3C8	3.2e-13	39.18	Ferredoxin-1 OS=Nostoc sp. (strain ATCC 29151 / PCC 7119) OX=1168 GN=petF PE=1 S...	[more]
P00253	7.1e-13	38.14	Ferredoxin OS=Desmonostoc muscorum OX=1179 PE=1 SV=2	[more]

BLAST of Carg22827 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GKE0	4.1e-96	95.77	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111455118 PE=3 SV=1	[more]
A0A6J1I4R5	2.0e-95	94.71	Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111470650 PE=3 SV=1	[more]
A0A6J1ESD7	1.6e-87	88.36	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111437299 PE=3 SV=1	[more]
A0A5A7TAG8	5.0e-86	86.24	Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G001210 PE=...	[more]
A0A1S3CQF2	5.0e-86	86.24	Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103503526 PE=3 SV=1	[more]

BLAST of Carg22827 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32550.1	2.6e-63	63.68	2Fe-2S ferredoxin-like superfamily protein	[more]
AT1G32550.2	5.1e-59	58.25	2Fe-2S ferredoxin-like superfamily protein	[more]
AT1G10960.1	2.2e-09	38.16	ferredoxin 1	[more]
AT2G27510.1	3.7e-09	34.88	ferredoxin 3	[more]
AT1G60950.1	1.9e-08	30.65	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 64..164 e-value: 3.6E-19 score: 70.2
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 77..126 e-value: 7.3E-11 score: 41.9
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 67..154 score: 9.251244
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 69..149 e-value: 4.26053E-14 score: 62.4124
None	No IPR available	PANTHER	PTHR43112:SF10	FERREDOXIN C 2, CHLOROPLASTIC	coord: 18..169
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 18..169
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 58..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22827-RA	Carg22827-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding