Carg22801 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22801
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Pentatricopeptide repeat-containing protein
Location	Carg_Chr19: 5502816 .. 5504772 (-)
RNA-Seq Expression	Carg22801
Synteny	Carg22801

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTGATCTTTGTTCTCCATTTTGTTTACGAGAAATTCTCTTCCTTCTTTCTCTCAGCTTGAATCTTATATTTTCCTCCCTTGAATTCCCCTTCTAGGGCACCATTTCAGATGTGTTTCGTGCAAATTTAGCTGCAAATGAATGTGATTTAGGGTTTTGCTTCTGAGAGAGAGATAACAGAGCTGGATGGATGGAATCGGATTTACCGAAACAAGAAATTCCGAAGCAGCAATCTCCTAGTTGAAATGGTGAGATTTTTTCTCCTATTCTTGGTAGTAATCGGCGACGGAGCCTTCAAATTTCTAGAATCAACACTTCTGATTTTAAACTCGAGTTCATCGTTATTGTTACGGAAGATCCACTGATTCCTCTGGTTGATAATTTCGATAACGTTGCCTTTTCTCTTCAATAGTTGTTGTTTATCTCTTGTTCATAATTCTTAGTTCTGATTTAGTCTCGCATTTATGGTGCCCAAATCCATTGCCTTCGTGCACTCATTTCTTTCTAATCGGATCACCTCGTCGTTCCTCACTATTTCTTCCATTTTAACCTATTCAACACAGCCGAATTTGAATTCTCATGAAGCAATTACCAGTGCTTCTCTTCAATCTCAACAATTAGAACAATCCCTCAACAGTTTTAAACTAATGATCCTTCAAGGGCATTGTCCGAGTGCAATCTCTTTCAATAATGTACTGGGTTTACTTGCAAAATCAGGCGATTTGCATAAAACTTGGTGGTTTTTCACTGAATTTTTGGGGAGAACTCACTTTGATGAGTATAGTTTCGGGATTACGATTAAGGCCTTTTGCAAAAACGGCAATGTAAGTAAAGGTTTCGAGCTTTTGGCTCAAATGGAGAGGATAGGCTTGTCTCCTAATGTCGTTATATACACTATCTTGATTGATGCCTGTTGCAAAAATGGTGACATTGAACAGGCTAAAGTATTGTTTTCTAAGATGAATGACCTTGGTTTGGTTGCTAATCAATACACTTACACTGCCATGATCAATGGATTTTTCAAGAAAGGATATAAGAAGGATGGTTTTGAGCTTTTTGAGAAGATGAAGCTTGTTGGGGTGCTTCCTAGTCTGTATACTTACAACACTCTGATTAATGAGTATTGTAGGGATGGGAAGTTGAGTATTGCCTTTAAGGTGTTCGACGAAATGTCGACAAGTGGGGTGTCGTGCAACGTAGTCACGTACACTATTCTAATTGGTGGGTTATGTCGTAAGAGACAATTGACGAAAGCTGAACGGCTGTTTGAACGAATGAAACAGGTTCGAATAAACCCAACTACTAGAACATATAATCTGTTGATGGATGGGTTCTGTAATATTGGAAAGTTGGAGAAGGCCTTAGGTTATTTTGATGAGCTGAAGTTGATTGGTTTGGCTCCAACTTCAGTGAGCTACAACATTTTAATTGCAGGTTTCTCTAAAGCAGGGAATTCTTCTGTAGTTTCAGAGTTGGTTAGAGAGATGGAGGATCGAGGCGTTTCTCCCTCGAAAGTGACGTATACGATTCTAATGGATGCCTTTGTCCGATCCGATGATGTCGAGAAAGCTTCTCAGTTGTTTCATCTCATGAAGAAAGTCGGTTCGGTCCCGGATCAACATACGTATGGTGTCCTAATGCATGGTTTGTGTATGAAAGGTAATATGGTAGAGGCATCAAAACTCTACAACTCAATGGTAGAGATGAATGTGGAGCCTAATGATGTTATCTACAATATAATGATAAATGGGTACTGCAAAGAGTGCAATTCTTACAAGGCTTTGAAGTTTCTTCAAGAGATGGTTAACAAAGGATTAACTCCAAGTCTGACTAGTTACAAATCTACCATTGAGGTTCTCTACAACGAAGGGAAGTCGACCGAGGCGAAATGTTTACTTAAAGAGATGATCGAAGCCGGGTTGAATCCGTCAGAATCTCTCTGTTGTAAGCTTGGTTAA

mRNA sequence

TCTGATCTTTGTTCTCCATTTTGTTTACGAGAAATTCTCTTCCTTCTTTCTCTCAGCTTGAATCTTATATTTTCCTCCCTTGAATTCCCCTTCTAGGGCACCATTTCAGATGTGTTTCGTGCAAATTTAGCTGCAAATGAATGTGATTTAGGGTTTTGCTTCTGAGAGAGAGATAACAGAGCTGGATGGATGGAATCGGATTTACCGAAACAAGAAATTCCGAAGCAGCAATCTCCTAGTTGAAATGCCGAATTTGAATTCTCATGAAGCAATTACCAGTGCTTCTCTTCAATCTCAACAATTAGAACAATCCCTCAACAGTTTTAAACTAATGATCCTTCAAGGGCATTGTCCGAGTGCAATCTCTTTCAATAATGTACTGGGTTTACTTGCAAAATCAGGCGATTTGCATAAAACTTGGTGGTTTTTCACTGAATTTTTGGGGAGAACTCACTTTGATGAGTATAGTTTCGGGATTACGATTAAGGCCTTTTGCAAAAACGGCAATGTAAGTAAAGGTTTCGAGCTTTTGGCTCAAATGGAGAGGATAGGCTTGTCTCCTAATGTCGTTATATACACTATCTTGATTGATGCCTGTTGCAAAAATGGTGACATTGAACAGGCTAAAGTATTGTTTTCTAAGATGAATGACCTTGGTTTGGTTGCTAATCAATACACTTACACTGCCATGATCAATGGATTTTTCAAGAAAGGATATAAGAAGGATGGTTTTGAGCTTTTTGAGAAGATGAAGCTTGTTGGGGTGCTTCCTAGTCTGTATACTTACAACACTCTGATTAATGAGTATTGTAGGGATGGGAAGTTGAGTATTGCCTTTAAGGTGTTCGACGAAATGTCGACAAGTGGGGTGTCGTGCAACGTAGTCACGTACACTATTCTAATTGGTGGGTTATGTCGTAAGAGACAATTGACGAAAGCTGAACGGCTGTTTGAACGAATGAAACAGGTTCGAATAAACCCAACTACTAGAACATATAATCTGTTGATGGATGGGTTCTGTAATATTGGAAAGTTGGAGAAGGCCTTAGGTTATTTTGATGAGCTGAAGTTGATTGGTTTGGCTCCAACTTCAGTGAGCTACAACATTTTAATTGCAGGTTTCTCTAAAGCAGGGAATTCTTCTGTAGTTTCAGAGTTGGTTAGAGAGATGGAGGATCGAGGCGTTTCTCCCTCGAAAGTGACGTATACGATTCTAATGGATGCCTTTGTCCGATCCGATGATGTCGAGAAAGCTTCTCAGTTGTTTCATCTCATGAAGAAAGTCGGTTCGGTCCCGGATCAACATACGTATGGTGTCCTAATGCATGGTTTGTGTATGAAAGGTAATATGGTAGAGGCATCAAAACTCTACAACTCAATGGTAGAGATGAATGTGGAGCCTAATGATGTTATCTACAATATAATGATAAATGGGTACTGCAAAGAGTGCAATTCTTACAAGGCTTTGAAGTTTCTTCAAGAGATGGTTAACAAAGGATTAACTCCAAGTCTGACTAGTTACAAATCTACCATTGAGGTTCTCTACAACGAAGGGAAGTCGACCGAGGCGAAATGTTTACTTAAAGAGATGATCGAAGCCGGGTTGAATCCGTCAGAATCTCTCTGTTGTAAGCTTGGTTAA

Coding sequence (CDS)

ATGCCGAATTTGAATTCTCATGAAGCAATTACCAGTGCTTCTCTTCAATCTCAACAATTAGAACAATCCCTCAACAGTTTTAAACTAATGATCCTTCAAGGGCATTGTCCGAGTGCAATCTCTTTCAATAATGTACTGGGTTTACTTGCAAAATCAGGCGATTTGCATAAAACTTGGTGGTTTTTCACTGAATTTTTGGGGAGAACTCACTTTGATGAGTATAGTTTCGGGATTACGATTAAGGCCTTTTGCAAAAACGGCAATGTAAGTAAAGGTTTCGAGCTTTTGGCTCAAATGGAGAGGATAGGCTTGTCTCCTAATGTCGTTATATACACTATCTTGATTGATGCCTGTTGCAAAAATGGTGACATTGAACAGGCTAAAGTATTGTTTTCTAAGATGAATGACCTTGGTTTGGTTGCTAATCAATACACTTACACTGCCATGATCAATGGATTTTTCAAGAAAGGATATAAGAAGGATGGTTTTGAGCTTTTTGAGAAGATGAAGCTTGTTGGGGTGCTTCCTAGTCTGTATACTTACAACACTCTGATTAATGAGTATTGTAGGGATGGGAAGTTGAGTATTGCCTTTAAGGTGTTCGACGAAATGTCGACAAGTGGGGTGTCGTGCAACGTAGTCACGTACACTATTCTAATTGGTGGGTTATGTCGTAAGAGACAATTGACGAAAGCTGAACGGCTGTTTGAACGAATGAAACAGGTTCGAATAAACCCAACTACTAGAACATATAATCTGTTGATGGATGGGTTCTGTAATATTGGAAAGTTGGAGAAGGCCTTAGGTTATTTTGATGAGCTGAAGTTGATTGGTTTGGCTCCAACTTCAGTGAGCTACAACATTTTAATTGCAGGTTTCTCTAAAGCAGGGAATTCTTCTGTAGTTTCAGAGTTGGTTAGAGAGATGGAGGATCGAGGCGTTTCTCCCTCGAAAGTGACGTATACGATTCTAATGGATGCCTTTGTCCGATCCGATGATGTCGAGAAAGCTTCTCAGTTGTTTCATCTCATGAAGAAAGTCGGTTCGGTCCCGGATCAACATACGTATGGTGTCCTAATGCATGGTTTGTGTATGAAAGGTAATATGGTAGAGGCATCAAAACTCTACAACTCAATGGTAGAGATGAATGTGGAGCCTAATGATGTTATCTACAATATAATGATAAATGGGTACTGCAAAGAGTGCAATTCTTACAAGGCTTTGAAGTTTCTTCAAGAGATGGTTAACAAAGGATTAACTCCAAGTCTGACTAGTTACAAATCTACCATTGAGGTTCTCTACAACGAAGGGAAGTCGACCGAGGCGAAATGTTTACTTAAAGAGATGATCGAAGCCGGGTTGAATCCGTCAGAATCTCTCTGTTGTAAGCTTGGTTAA

Protein sequence

MPNLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWWFFTEFLGRTHFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKNGDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYTYNTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMKQVRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSSVVSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLMHGLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTPSLTSYKSTIEVLYNEGKSTEAKCLLKEMIEAGLNPSESLCCKLG

Homology

[Close]

BLAST of Carg22801 vs. NCBI nr
Match: KAG7011560.1 (Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 931.0 bits (2405), Expect = 3.9e-267
Identity = 465/465 (100.00%), Postives = 465/465 (100.00%), Query Frame = 0


Query: 1   MPNLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWW 60
           MPNLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWW
Sbjct: 1   MPNLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWW 60

Query: 61  FFTEFLGRTHFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCK 120
           FFTEFLGRTHFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCK
Sbjct: 61  FFTEFLGRTHFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCK 120

Query: 121 NGDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYT 180
           NGDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYT
Sbjct: 121 NGDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYT 180

Query: 181 YNTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMK 240
           YNTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMK
Sbjct: 181 YNTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMK 240

Query: 241 QVRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSS 300
           QVRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSS
Sbjct: 241 QVRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSS 300

Query: 301 VVSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLM 360
           VVSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLM
Sbjct: 301 VVSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLM 360

Query: 361 HGLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLT 420
           HGLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLT
Sbjct: 361 HGLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLT 420

Query: 421 PSLTSYKSTIEVLYNEGKSTEAKCLLKEMIEAGLNPSESLCCKLG 466
           PSLTSYKSTIEVLYNEGKSTEAKCLLKEMIEAGLNPSESLCCKLG
Sbjct: 421 PSLTSYKSTIEVLYNEGKSTEAKCLLKEMIEAGLNPSESLCCKLG 465

[Close]

BLAST of Carg22801 vs. NCBI nr
Match: XP_022953086.1 (pentatricopeptide repeat-containing protein At4g11690 [Cucurbita moschata])

HSP 1 Score: 929.1 bits (2400), Expect = 1.5e-266
Identity = 464/464 (100.00%), Postives = 464/464 (100.00%), Query Frame = 0


Query: 2   PNLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWWF 61
           PNLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWWF
Sbjct: 34  PNLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWWF 93

Query: 62  FTEFLGRTHFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKN 121
           FTEFLGRTHFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKN
Sbjct: 94  FTEFLGRTHFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKN 153

Query: 122 GDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYTY 181
           GDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYTY
Sbjct: 154 GDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYTY 213

Query: 182 NTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMKQ 241
           NTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMKQ
Sbjct: 214 NTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMKQ 273

Query: 242 VRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSSV 301
           VRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSSV
Sbjct: 274 VRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSSV 333

Query: 302 VSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLMH 361
           VSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLMH
Sbjct: 334 VSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLMH 393

Query: 362 GLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTP 421
           GLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTP
Sbjct: 394 GLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTP 453

Query: 422 SLTSYKSTIEVLYNEGKSTEAKCLLKEMIEAGLNPSESLCCKLG 466
           SLTSYKSTIEVLYNEGKSTEAKCLLKEMIEAGLNPSESLCCKLG
Sbjct: 454 SLTSYKSTIEVLYNEGKSTEAKCLLKEMIEAGLNPSESLCCKLG 497

[Close]

BLAST of Carg22801 vs. NCBI nr
Match: KAG6571877.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 918.7 bits (2373), Expect = 2.0e-263
Identity = 459/464 (98.92%), Postives = 462/464 (99.57%), Query Frame = 0


Query: 2   PNLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWWF 61
           PNLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPS+ISFNNVLGLLAKSGDLHKTWWF
Sbjct: 34  PNLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSSISFNNVLGLLAKSGDLHKTWWF 93

Query: 62  FTEFLGRTHFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKN 121
           FTEFLGRTHFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKN
Sbjct: 94  FTEFLGRTHFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKN 153

Query: 122 GDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYTY 181
           GDIEQAKVLFSKMNDLGLV NQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYTY
Sbjct: 154 GDIEQAKVLFSKMNDLGLVVNQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYTY 213

Query: 182 NTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMKQ 241
           NTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQL+KAERLFERMKQ
Sbjct: 214 NTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLSKAERLFERMKQ 273

Query: 242 VRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSSV 301
           VRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSSV
Sbjct: 274 VRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSSV 333

Query: 302 VSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLMH 361
           VSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLMH
Sbjct: 334 VSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLMH 393

Query: 362 GLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTP 421
           GLCMKGNMV+ASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTP
Sbjct: 394 GLCMKGNMVKASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTP 453

Query: 422 SLTSYKSTIEVLYNEGKSTEAKCLLKEMIEAGLNPSESLCCKLG 466
           SLTSYKSTIEVLYNEGKSTEAK LLKEMIEAGLNPSESLCCKLG
Sbjct: 454 SLTSYKSTIEVLYNEGKSTEAKRLLKEMIEAGLNPSESLCCKLG 497

[Close]

BLAST of Carg22801 vs. NCBI nr
Match: XP_023511558.1 (pentatricopeptide repeat-containing protein At4g11690 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 904.4 bits (2336), Expect = 4.0e-259
Identity = 451/464 (97.20%), Postives = 457/464 (98.49%), Query Frame = 0


Query: 2   PNLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWWF 61
           PNLNSHEAITSASLQSQQLEQSLNSFKLMILQG CPS+ISFNNVLGLLAKSGDLHKTWWF
Sbjct: 34  PNLNSHEAITSASLQSQQLEQSLNSFKLMILQGQCPSSISFNNVLGLLAKSGDLHKTWWF 93

Query: 62  FTEFLGRTHFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKN 121
           FTEFLGRTHFDEYSFGITIKAFC+NGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKN
Sbjct: 94  FTEFLGRTHFDEYSFGITIKAFCENGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKN 153

Query: 122 GDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYTY 181
           GDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFE FEKMKLVGV PSLYTY
Sbjct: 154 GDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFEFFEKMKLVGVHPSLYTY 213

Query: 182 NTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMKQ 241
           NTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQ++KAERLFERMKQ
Sbjct: 214 NTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQMSKAERLFERMKQ 273

Query: 242 VRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSSV 301
           VRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNS+V
Sbjct: 274 VRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSAV 333

Query: 302 VSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLMH 361
           VSELVREMEDRG+SPSKVTYTILMDAFVRSDDVEKASQL HLMKKVGSVPDQHTYGVLMH
Sbjct: 334 VSELVREMEDRGISPSKVTYTILMDAFVRSDDVEKASQLLHLMKKVGSVPDQHTYGVLMH 393

Query: 362 GLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTP 421
           GLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTP
Sbjct: 394 GLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTP 453

Query: 422 SLTSYKSTIEVLYNEGKSTEAKCLLKEMIEAGLNPSESLCCKLG 466
           SL SY STIEVLYNEGKSTEAK LLKEMIEAGLNPSESLCCKLG
Sbjct: 454 SLASYSSTIEVLYNEGKSTEAKRLLKEMIEAGLNPSESLCCKLG 497

[Close]

BLAST of Carg22801 vs. NCBI nr
Match: XP_022971940.1 (pentatricopeptide repeat-containing protein At4g11690 [Cucurbita maxima])

HSP 1 Score: 881.3 bits (2276), Expect = 3.6e-252
Identity = 442/464 (95.26%), Postives = 451/464 (97.20%), Query Frame = 0


Query: 2   PNLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWWF 61
           PNLNSHEAI +ASLQSQ LEQSL+SFKLMILQGHCPS+ISFNNVLGLLAKSGDLHKTW F
Sbjct: 34  PNLNSHEAIINASLQSQLLEQSLHSFKLMILQGHCPSSISFNNVLGLLAKSGDLHKTWCF 93

Query: 62  FTEFLGRTHFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKN 121
           FTEFLGRT FDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKN
Sbjct: 94  FTEFLGRTRFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKN 153

Query: 122 GDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYTY 181
           GDIEQAKVLFSKMNDLG VANQYTYTAMINGFFKKGYKKDGFEL+EKMKLVGVLPSLYTY
Sbjct: 154 GDIEQAKVLFSKMNDLGFVANQYTYTAMINGFFKKGYKKDGFELYEKMKLVGVLPSLYTY 213

Query: 182 NTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMKQ 241
           NTLINEYCRDGKLSIAFKVFDEMST GVSCNVVTYTILIGGLCRKRQ++KAERLFERMKQ
Sbjct: 214 NTLINEYCRDGKLSIAFKVFDEMSTRGVSCNVVTYTILIGGLCRKRQMSKAERLFERMKQ 273

Query: 242 VRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSSV 301
           V INPTTRTYNLLMDGFCNIGKLEKALGYFD+LKLIGLAPTSVSYNILIAGFSKAGNS+V
Sbjct: 274 VHINPTTRTYNLLMDGFCNIGKLEKALGYFDKLKLIGLAPTSVSYNILIAGFSKAGNSAV 333

Query: 302 VSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLMH 361
           VSELVREMEDRG+SPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLMH
Sbjct: 334 VSELVREMEDRGISPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLMH 393

Query: 362 GLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTP 421
           GLCMKGNMVEASKLY SMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTP
Sbjct: 394 GLCMKGNMVEASKLYKSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTP 453

Query: 422 SLTSYKSTIEVLYNEGKSTEAKCLLKEMIEAGLNPSESLCCKLG 466
           SL SY STIEVL NEGKSTEAK LLKEMIEAGLNPSESL CKLG
Sbjct: 454 SLASYSSTIEVLCNEGKSTEAKRLLKEMIEAGLNPSESLYCKLG 497

[Close]

BLAST of Carg22801 vs. ExPASy Swiss-Prot
Match: Q9T0D6 (Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana OX=3702 GN=At4g11690 PE=2 SV=1)

HSP 1 Score: 488.8 bits (1257), Expect = 6.8e-137
Identity = 241/454 (53.08%), Postives = 325/454 (71.59%), Query Frame = 0


Query: 7   HEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWWFFTEFL 66
           +E I ++ +QSQ L  S++ F  M+  G  P +  FN +L  +  S   ++ W FF E  
Sbjct: 97  YEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENK 156

Query: 67  GRTHFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKNGDIEQ 126
            +   D YSFGI IK  C+ G + K F+LL ++   G SPNVVIYT LID CCK G+IE+
Sbjct: 157 SKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEK 216

Query: 127 AKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYTYNTLIN 186
           AK LF +M  LGLVAN+ TYT +ING FK G KK GFE++EKM+  GV P+LYTYN ++N
Sbjct: 217 AKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMN 276

Query: 187 EYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMKQVRINP 246
           + C+DG+   AF+VFDEM   GVSCN+VTY  LIGGLCR+ +L +A ++ ++MK   INP
Sbjct: 277 QLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINP 336

Query: 247 TTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSSVVSELV 306
              TYN L+DGFC +GKL KAL    +LK  GL+P+ V+YNIL++GF + G++S  +++V
Sbjct: 337 NLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMV 396

Query: 307 REMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLMHGLCMK 366
           +EME+RG+ PSKVTYTIL+D F RSD++EKA QL   M+++G VPD HTY VL+HG C+K
Sbjct: 397 KEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIK 456

Query: 367 GNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTPSLTSY 426
           G M EAS+L+ SMVE N EPN+VIYN MI GYCKE +SY+ALK L+EM  K L P++ SY
Sbjct: 457 GQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASY 516

Query: 427 KSTIEVLYNEGKSTEAKCLLKEMIEAGLNPSESL 461
           +  IEVL  E KS EA+ L+++MI++G++PS S+
Sbjct: 517 RYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSI 550

[Close]

BLAST of Carg22801 vs. ExPASy Swiss-Prot
Match: Q9FIX3 (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX=3702 GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 8.8e-68
Identity = 143/468 (30.56%), Postives = 246/468 (52.56%), Query Frame = 0


Query: 1   MPNLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWW 60
           +PN+ ++  +     + ++++      + M L+G  P+ IS+N V+  L + G + +  +
Sbjct: 237 LPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSF 296

Query: 61  FFTEFLGRTH-FDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACC 120
             TE   R +  DE ++   IK +CK GN  +   + A+M R GL+P+V+ YT LI + C
Sbjct: 297 VLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMC 356

Query: 121 KNGDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLY 180
           K G++ +A     +M   GL  N+ TYT +++GF +KGY  + + +  +M   G  PS+ 
Sbjct: 357 KAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVV 416

Query: 181 TYNTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERM 240
           TYN LIN +C  GK+  A  V ++M   G+S +VV+Y+ ++ G CR   + +A R+   M
Sbjct: 417 TYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREM 476

Query: 241 KQVRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNS 300
            +  I P T TY+ L+ GFC   + ++A   ++E+  +GL P   +Y  LI  +   G+ 
Sbjct: 477 VEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDL 536

Query: 301 SVVSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVL 360
               +L  EM ++GV P  VTY++L++   +     +A +L   +    SVP   TY  L
Sbjct: 537 EKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTL 596

Query: 361 MH---------------GLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNS 420
           +                G CMKG M EA +++ SM+  N +P+   YNIMI+G+C+  + 
Sbjct: 597 IENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDI 656

Query: 421 YKALKFLQEMVNKGLTPSLTSYKSTIEVLYNEGKSTEAKCLLKEMIEA 453
            KA    +EMV  G      +  + ++ L+ EGK  E   ++  ++ +
Sbjct: 657 RKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRS 704

[Close]

BLAST of Carg22801 vs. ExPASy Swiss-Prot
Match: Q0WVK7 (Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g05670 PE=2 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 6.9e-65
Identity = 142/454 (31.28%), Postives = 237/454 (52.20%), Query Frame = 0


Query: 3   NLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWWFF 62
           N+ S+  +     Q  +++++ +   LM L+G+ P  IS++ V+    + G+L K W   
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 304

Query: 63  TEFLGRTHF--DEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCK 122
            E + R     + Y +G  I   C+   +++  E  ++M R G+ P+ V+YT LID  CK
Sbjct: 305 -EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCK 364

Query: 123 NGDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYT 182
            GDI  A   F +M+   +  +  TYTA+I+GF + G   +  +LF +M   G+ P   T
Sbjct: 365 RGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVT 424

Query: 183 YNTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMK 242
           +  LIN YC+ G +  AF+V + M  +G S NVVTYT LI GLC++  L  A  L   M 
Sbjct: 425 FTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMW 484

Query: 243 QVRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSS 302
           ++ + P   TYN +++G C  G +E+A+    E +  GL   +V+Y  L+  + K+G   
Sbjct: 485 KIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMD 544

Query: 303 VVSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLM 362
              E+++EM  +G+ P+ VT+ +LM+ F     +E   +L + M   G  P+  T+  L+
Sbjct: 545 KAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV 604

Query: 363 HGLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLT 422
              C++ N+  A+ +Y  M    V P+   Y  ++ G+CK  N  +A    QEM  KG +
Sbjct: 605 KQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFS 664

Query: 423 PSLTSYKSTIEVLYNEGKSTEAKCLLKEMIEAGL 455
            S+++Y   I+      K  EA+ +  +M   GL
Sbjct: 665 VSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGL 697

[Close]

BLAST of Carg22801 vs. ExPASy Swiss-Prot
Match: Q9SXD1 (Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g62670 PE=3 SV=2)

HSP 1 Score: 235.3 bits (599), Expect = 1.4e-60
Identity = 130/453 (28.70%), Postives = 235/453 (51.88%), Query Frame = 0


Query: 2   PNLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWWF 61
           PN+ +  ++ +    S+++ +++     M + G+ P+ ++FN ++  L       +    
Sbjct: 149 PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 208

Query: 62  FTEFLGR-THFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCK 121
               + +    D  ++G+ +   CK G+    F LL +ME+  L P V+IY  +ID  CK
Sbjct: 209 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 268

Query: 122 NGDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYT 181
              ++ A  LF +M   G+  N  TY+++I+     G   D   L   M    + P ++T
Sbjct: 269 YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFT 328

Query: 182 YNTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMK 241
           ++ LI+ + ++GKL  A K++DEM    +  ++VTY+ LI G C   +L +A+++FE M 
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMV 388

Query: 242 QVRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSS 301
                P   TYN L+ GFC   ++E+ +  F E+   GL   +V+YNILI G  +AG+  
Sbjct: 389 SKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCD 448

Query: 302 VVSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLM 361
           +  E+ +EM   GV P+ +TY  L+D   ++  +EKA  +F  +++    P  +TY +++
Sbjct: 449 MAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMI 508

Query: 362 HGLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLT 421
            G+C  G + +   L+ ++    V+P+ V YN MI+G+C++ +  +A    +EM   G  
Sbjct: 509 EGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTL 568

Query: 422 PSLTSYKSTIEVLYNEGKSTEAKCLLKEMIEAG 454
           P+   Y + I     +G    +  L+KEM   G
Sbjct: 569 PNSGCYNTLIRARLRDGDREASAELIKEMRSCG 601

[Close]

BLAST of Carg22801 vs. ExPASy Swiss-Prot
Match: Q9ASZ8 (Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana OX=3702 GN=At1g12620 PE=2 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.3e-60
Identity = 138/443 (31.15%), Postives = 232/443 (52.37%), Query Frame = 0


Query: 19  QLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWWFFTEFLGRTHF--DEYSF 78
           ++ ++L     M+  GH P+ I+ N ++  L  +G +          +  T F  +E ++
Sbjct: 157 RVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMV-ETGFQPNEVTY 216

Query: 79  GITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKNGDIEQAKVLFSKMND 138
           G  +K  CK+G  +   ELL +ME   +  + V Y+I+ID  CK+G ++ A  LF++M  
Sbjct: 217 GPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI 276

Query: 139 LGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYTYNTLINEYCRDGKLSI 198
            G  A+   YT +I GF   G   DG +L   M    + P +  ++ LI+ + ++GKL  
Sbjct: 277 KGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLRE 336

Query: 199 AFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMKQVRINPTTRTYNLLMD 258
           A ++  EM   G+S + VTYT LI G C++ QL KA  + + M      P  RT+N+L++
Sbjct: 337 AEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILIN 396

Query: 259 GFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSSVVSELVREMEDRGVSP 318
           G+C    ++  L  F ++ L G+   +V+YN LI GF + G   V  EL +EM  R V P
Sbjct: 397 GYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRP 456

Query: 319 SKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLMHGLCMKGNMVEASKLY 378
             V+Y IL+D    + + EKA ++F  ++K     D   Y +++HG+C    + +A  L+
Sbjct: 457 DIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLF 516

Query: 379 NSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTPSLTSYKSTIEVLYNE 438
            S+    V+P+   YNIMI G CK+ +  +A    ++M   G +P+  +Y   I     E
Sbjct: 517 CSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGE 576

Query: 439 GKSTEAKCLLKEMIEAGLNPSES 460
           G +T++  L++E+   G +   S
Sbjct: 577 GDATKSAKLIEEIKRCGFSVDAS 598

[Close]

BLAST of Carg22801 vs. ExPASy TrEMBL
Match: A0A6J1GM09 (pentatricopeptide repeat-containing protein At4g11690 OS=Cucurbita moschata OX=3662 GN=LOC111455596 PE=4 SV=1)

HSP 1 Score: 929.1 bits (2400), Expect = 7.3e-267
Identity = 464/464 (100.00%), Postives = 464/464 (100.00%), Query Frame = 0


Query: 2   PNLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWWF 61
           PNLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWWF
Sbjct: 34  PNLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWWF 93

Query: 62  FTEFLGRTHFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKN 121
           FTEFLGRTHFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKN
Sbjct: 94  FTEFLGRTHFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKN 153

Query: 122 GDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYTY 181
           GDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYTY
Sbjct: 154 GDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYTY 213

Query: 182 NTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMKQ 241
           NTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMKQ
Sbjct: 214 NTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMKQ 273

Query: 242 VRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSSV 301
           VRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSSV
Sbjct: 274 VRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSSV 333

Query: 302 VSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLMH 361
           VSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLMH
Sbjct: 334 VSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLMH 393

Query: 362 GLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTP 421
           GLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTP
Sbjct: 394 GLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTP 453

Query: 422 SLTSYKSTIEVLYNEGKSTEAKCLLKEMIEAGLNPSESLCCKLG 466
           SLTSYKSTIEVLYNEGKSTEAKCLLKEMIEAGLNPSESLCCKLG
Sbjct: 454 SLTSYKSTIEVLYNEGKSTEAKCLLKEMIEAGLNPSESLCCKLG 497

[Close]

BLAST of Carg22801 vs. ExPASy TrEMBL
Match: A0A6J1I748 (pentatricopeptide repeat-containing protein At4g11690 OS=Cucurbita maxima OX=3661 GN=LOC111470611 PE=4 SV=1)

HSP 1 Score: 881.3 bits (2276), Expect = 1.7e-252
Identity = 442/464 (95.26%), Postives = 451/464 (97.20%), Query Frame = 0


Query: 2   PNLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWWF 61
           PNLNSHEAI +ASLQSQ LEQSL+SFKLMILQGHCPS+ISFNNVLGLLAKSGDLHKTW F
Sbjct: 34  PNLNSHEAIINASLQSQLLEQSLHSFKLMILQGHCPSSISFNNVLGLLAKSGDLHKTWCF 93

Query: 62  FTEFLGRTHFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKN 121
           FTEFLGRT FDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKN
Sbjct: 94  FTEFLGRTRFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKN 153

Query: 122 GDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYTY 181
           GDIEQAKVLFSKMNDLG VANQYTYTAMINGFFKKGYKKDGFEL+EKMKLVGVLPSLYTY
Sbjct: 154 GDIEQAKVLFSKMNDLGFVANQYTYTAMINGFFKKGYKKDGFELYEKMKLVGVLPSLYTY 213

Query: 182 NTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMKQ 241
           NTLINEYCRDGKLSIAFKVFDEMST GVSCNVVTYTILIGGLCRKRQ++KAERLFERMKQ
Sbjct: 214 NTLINEYCRDGKLSIAFKVFDEMSTRGVSCNVVTYTILIGGLCRKRQMSKAERLFERMKQ 273

Query: 242 VRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSSV 301
           V INPTTRTYNLLMDGFCNIGKLEKALGYFD+LKLIGLAPTSVSYNILIAGFSKAGNS+V
Sbjct: 274 VHINPTTRTYNLLMDGFCNIGKLEKALGYFDKLKLIGLAPTSVSYNILIAGFSKAGNSAV 333

Query: 302 VSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLMH 361
           VSELVREMEDRG+SPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLMH
Sbjct: 334 VSELVREMEDRGISPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLMH 393

Query: 362 GLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTP 421
           GLCMKGNMVEASKLY SMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTP
Sbjct: 394 GLCMKGNMVEASKLYKSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTP 453

Query: 422 SLTSYKSTIEVLYNEGKSTEAKCLLKEMIEAGLNPSESLCCKLG 466
           SL SY STIEVL NEGKSTEAK LLKEMIEAGLNPSESL CKLG
Sbjct: 454 SLASYSSTIEVLCNEGKSTEAKRLLKEMIEAGLNPSESLYCKLG 497

[Close]

BLAST of Carg22801 vs. ExPASy TrEMBL
Match: A0A6J1C8X2 (pentatricopeptide repeat-containing protein At4g11690 OS=Momordica charantia OX=3673 GN=LOC111008514 PE=4 SV=1)

HSP 1 Score: 759.2 bits (1959), Expect = 1.0e-215
Identity = 376/459 (81.92%), Postives = 410/459 (89.32%), Query Frame = 0


Query: 7   HEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWWFFTEFL 66
           HEAI SA +QSQ  EQSLN FKLM+L+G CPS+ SFNNVLGLL KSGDL+K W FF EFL
Sbjct: 62  HEAIISAHVQSQLPEQSLNHFKLMVLKGLCPSSNSFNNVLGLLTKSGDLNKAWCFFNEFL 121

Query: 67  GRTHFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKNGDIEQ 126
           GRTHFD YSFGI IKAFC+ GNVSKGFELLAQMER+GLSPNVVIYTILIDACCKNGDIEQ
Sbjct: 122 GRTHFDVYSFGIMIKAFCEGGNVSKGFELLAQMERMGLSPNVVIYTILIDACCKNGDIEQ 181

Query: 127 AKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYTYNTLIN 186
           AKVLFSKM DLGLVANQYTYT MING FKKG KKDGFEL+EKM L+GV PS+YTYN+LIN
Sbjct: 182 AKVLFSKMGDLGLVANQYTYTVMINGLFKKGCKKDGFELYEKMNLIGVFPSVYTYNSLIN 241

Query: 187 EYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMKQVRINP 246
           EYCRDG L +AFK+FDEM T GVSCNVVTY ILIGGLCR RQ+ KAE L E+MK   INP
Sbjct: 242 EYCRDGTLCLAFKLFDEMRTRGVSCNVVTYNILIGGLCRNRQVLKAEWLLEQMKLAHINP 301

Query: 247 TTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSSVVSELV 306
           +T T+NLLMDGFCN+GK +KAL YFDELKLIGL+PTSV+YNILIAGFSKAGNS+VV ELV
Sbjct: 302 STITFNLLMDGFCNVGKFDKALSYFDELKLIGLSPTSVTYNILIAGFSKAGNSAVVCELV 361

Query: 307 REMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLMHGLCMK 366
           REMEDRG+SPSKVTYTILMDAFVRSDDV KASQ+FHLMKKVGSVPDQ+TYGVLMHGLCMK
Sbjct: 362 REMEDRGISPSKVTYTILMDAFVRSDDVGKASQMFHLMKKVGSVPDQYTYGVLMHGLCMK 421

Query: 367 GNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTPSLTSY 426
           GNMVEASKLY SM+E +++PNDVIYN MINGYCKECNSYKALKFLQEMV KG+TPS  SY
Sbjct: 422 GNMVEASKLYKSMIETHLQPNDVIYNTMINGYCKECNSYKALKFLQEMVRKGMTPSQASY 481

Query: 427 KSTIEVLYNEGKSTEAKCLLKEMIEAGLNPSESLCCKLG 466
            STIEVL  +GKSTEAK LLKEMIE GL+PSESLC ++G
Sbjct: 482 SSTIEVLCKDGKSTEAKELLKEMIENGLDPSESLCRRVG 520

[Close]

BLAST of Carg22801 vs. ExPASy TrEMBL
Match: A0A5D3C6B4 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001850 PE=4 SV=1)

HSP 1 Score: 739.6 bits (1908), Expect = 8.2e-210
Identity = 362/470 (77.02%), Postives = 415/470 (88.30%), Query Frame = 0


Query: 3   NLNS-------HEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDL 62
           NLNS       H+A+ +ASLQS QLEQSL+SFKLM+L+GH PS+ SFNNVL LLAKSG+L
Sbjct: 35  NLNSESVCGRPHDAVINASLQSPQLEQSLDSFKLMVLKGHSPSSYSFNNVLDLLAKSGNL 94

Query: 63  HKTWWFFTEFLGRTHFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILI 122
            +TWWFFTE+LGRT FD YSFGITIKAFC+NGNVSKGFELLAQME +G+SPNV IYTILI
Sbjct: 95  DRTWWFFTEYLGRTQFDVYSFGITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILI 154

Query: 123 DACCKNGDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVL 182
           +ACCKNGDI+QAKV+FS+M+DLGL A+QY YT MINGFFKKGYKKDGFEL+EKMKL+GVL
Sbjct: 155 EACCKNGDIDQAKVMFSRMDDLGLAADQYIYTVMINGFFKKGYKKDGFELYEKMKLMGVL 214

Query: 183 PSLYTYNTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERL 242
           P+LYTYN+LI EYCRDGKLS+AFK+FDE+S  GV+CN VTY ILIGGLCRK Q+ KAE L
Sbjct: 215 PNLYTYNSLITEYCRDGKLSLAFKLFDEISKRGVACNAVTYNILIGGLCRKGQVLKAEGL 274

Query: 243 FERMKQVRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSK 302
            ERMK+  INPTTRT+NLLMDG CN GKL+KAL Y D+LKLIG +PT V+YNILI+GFSK
Sbjct: 275 LERMKRAHINPTTRTFNLLMDGLCNTGKLDKALSYLDKLKLIGQSPTLVTYNILISGFSK 334

Query: 303 AGNSSVVSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHT 362
            GNSSVVSELVREMEDRG+SPSKVTYTILMDAFVRSDD+EKA ++FHLMK++G VPDQHT
Sbjct: 335 VGNSSVVSELVREMEDRGISPSKVTYTILMDAFVRSDDIEKAYEMFHLMKRIGLVPDQHT 394

Query: 363 YGVLMHGLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMV 422
           YGVL+HGLC++GNMVEASKLY SMVEM++EPNDVIYN MINGYCKECNSYKALKFL+EMV
Sbjct: 395 YGVLIHGLCIRGNMVEASKLYKSMVEMHLEPNDVIYNTMINGYCKECNSYKALKFLEEMV 454

Query: 423 NKGLTPSLTSYKSTIEVLYNEGKSTEAKCLLKEMIEAGLNPSESLCCKLG 466
             G+TP++ SY STI+VL  +GKS EAK LLKEM EAGL P ESL  K+G
Sbjct: 455 KNGVTPNVASYISTIQVLCKDGKSIEAKRLLKEMTEAGLKPPESLRSKVG 504

[Close]

BLAST of Carg22801 vs. ExPASy TrEMBL
Match: A0A1S3C0B2 (pentatricopeptide repeat-containing protein At4g11690 OS=Cucumis melo OX=3656 GN=LOC103495373 PE=4 SV=1)

HSP 1 Score: 739.6 bits (1908), Expect = 8.2e-210
Identity = 362/470 (77.02%), Postives = 415/470 (88.30%), Query Frame = 0


Query: 3   NLNS-------HEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDL 62
           NLNS       H+A+ +ASLQS QLEQSL+SFKLM+L+GH PS+ SFNNVL LLAKSG+L
Sbjct: 35  NLNSESVCGRPHDAVINASLQSPQLEQSLDSFKLMVLKGHSPSSYSFNNVLDLLAKSGNL 94

Query: 63  HKTWWFFTEFLGRTHFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILI 122
            +TWWFFTE+LGRT FD YSFGITIKAFC+NGNVSKGFELLAQME +G+SPNV IYTILI
Sbjct: 95  DRTWWFFTEYLGRTQFDVYSFGITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILI 154

Query: 123 DACCKNGDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVL 182
           +ACCKNGDI+QAKV+FS+M+DLGL A+QY YT MINGFFKKGYKKDGFEL+EKMKL+GVL
Sbjct: 155 EACCKNGDIDQAKVMFSRMDDLGLAADQYIYTVMINGFFKKGYKKDGFELYEKMKLMGVL 214

Query: 183 PSLYTYNTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERL 242
           P+LYTYN+LI EYCRDGKLS+AFK+FDE+S  GV+CN VTY ILIGGLCRK Q+ KAE L
Sbjct: 215 PNLYTYNSLITEYCRDGKLSLAFKLFDEISKRGVACNAVTYNILIGGLCRKGQVLKAEGL 274

Query: 243 FERMKQVRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSK 302
            ERMK+  INPTTRT+NLLMDG CN GKL+KAL Y D+LKLIG +PT V+YNILI+GFSK
Sbjct: 275 LERMKRAHINPTTRTFNLLMDGLCNTGKLDKALSYLDKLKLIGQSPTLVTYNILISGFSK 334

Query: 303 AGNSSVVSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHT 362
            GNSSVVSELVREMEDRG+SPSKVTYTILMDAFVRSDD+EKA ++FHLMK++G VPDQHT
Sbjct: 335 VGNSSVVSELVREMEDRGISPSKVTYTILMDAFVRSDDIEKAYEMFHLMKRIGLVPDQHT 394

Query: 363 YGVLMHGLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMV 422
           YGVL+HGLC++GNMVEASKLY SMVEM++EPNDVIYN MINGYCKECNSYKALKFL+EMV
Sbjct: 395 YGVLIHGLCIRGNMVEASKLYKSMVEMHLEPNDVIYNTMINGYCKECNSYKALKFLEEMV 454

Query: 423 NKGLTPSLTSYKSTIEVLYNEGKSTEAKCLLKEMIEAGLNPSESLCCKLG 466
             G+TP++ SY STI+VL  +GKS EAK LLKEM EAGL P ESL  K+G
Sbjct: 455 KNGVTPNVASYISTIQVLCKDGKSIEAKRLLKEMTEAGLKPPESLRSKVG 504

[Close]

BLAST of Carg22801 vs. TAIR 10
Match: AT4G11690.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 488.8 bits (1257), Expect = 4.8e-138
Identity = 241/454 (53.08%), Postives = 325/454 (71.59%), Query Frame = 0


Query: 7   HEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWWFFTEFL 66
           +E I ++ +QSQ L  S++ F  M+  G  P +  FN +L  +  S   ++ W FF E  
Sbjct: 97  YEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENK 156

Query: 67  GRTHFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCKNGDIEQ 126
            +   D YSFGI IK  C+ G + K F+LL ++   G SPNVVIYT LID CCK G+IE+
Sbjct: 157 SKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEK 216

Query: 127 AKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYTYNTLIN 186
           AK LF +M  LGLVAN+ TYT +ING FK G KK GFE++EKM+  GV P+LYTYN ++N
Sbjct: 217 AKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMN 276

Query: 187 EYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMKQVRINP 246
           + C+DG+   AF+VFDEM   GVSCN+VTY  LIGGLCR+ +L +A ++ ++MK   INP
Sbjct: 277 QLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINP 336

Query: 247 TTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSSVVSELV 306
              TYN L+DGFC +GKL KAL    +LK  GL+P+ V+YNIL++GF + G++S  +++V
Sbjct: 337 NLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMV 396

Query: 307 REMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLMHGLCMK 366
           +EME+RG+ PSKVTYTIL+D F RSD++EKA QL   M+++G VPD HTY VL+HG C+K
Sbjct: 397 KEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIK 456

Query: 367 GNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLTPSLTSY 426
           G M EAS+L+ SMVE N EPN+VIYN MI GYCKE +SY+ALK L+EM  K L P++ SY
Sbjct: 457 GQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASY 516

Query: 427 KSTIEVLYNEGKSTEAKCLLKEMIEAGLNPSESL 461
           +  IEVL  E KS EA+ L+++MI++G++PS S+
Sbjct: 517 RYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSI 550

[Close]

BLAST of Carg22801 vs. TAIR 10
Match: AT5G39710.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 259.2 bits (661), Expect = 6.2e-69
Identity = 143/468 (30.56%), Postives = 246/468 (52.56%), Query Frame = 0


Query: 1   MPNLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWW 60
           +PN+ ++  +     + ++++      + M L+G  P+ IS+N V+  L + G + +  +
Sbjct: 237 LPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSF 296

Query: 61  FFTEFLGRTH-FDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACC 120
             TE   R +  DE ++   IK +CK GN  +   + A+M R GL+P+V+ YT LI + C
Sbjct: 297 VLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMC 356

Query: 121 KNGDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLY 180
           K G++ +A     +M   GL  N+ TYT +++GF +KGY  + + +  +M   G  PS+ 
Sbjct: 357 KAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVV 416

Query: 181 TYNTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERM 240
           TYN LIN +C  GK+  A  V ++M   G+S +VV+Y+ ++ G CR   + +A R+   M
Sbjct: 417 TYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREM 476

Query: 241 KQVRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNS 300
            +  I P T TY+ L+ GFC   + ++A   ++E+  +GL P   +Y  LI  +   G+ 
Sbjct: 477 VEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDL 536

Query: 301 SVVSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVL 360
               +L  EM ++GV P  VTY++L++   +     +A +L   +    SVP   TY  L
Sbjct: 537 EKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTL 596

Query: 361 MH---------------GLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNS 420
           +                G CMKG M EA +++ SM+  N +P+   YNIMI+G+C+  + 
Sbjct: 597 IENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDI 656

Query: 421 YKALKFLQEMVNKGLTPSLTSYKSTIEVLYNEGKSTEAKCLLKEMIEA 453
            KA    +EMV  G      +  + ++ L+ EGK  E   ++  ++ +
Sbjct: 657 RKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRS 704

[Close]

BLAST of Carg22801 vs. TAIR 10
Match: AT1G05670.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 249.6 bits (636), Expect = 4.9e-66
Identity = 142/454 (31.28%), Postives = 237/454 (52.20%), Query Frame = 0


Query: 3   NLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWWFF 62
           N+ S+  +     Q  +++++ +   LM L+G+ P  IS++ V+    + G+L K W   
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 304

Query: 63  TEFLGRTHF--DEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCK 122
            E + R     + Y +G  I   C+   +++  E  ++M R G+ P+ V+YT LID  CK
Sbjct: 305 -EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCK 364

Query: 123 NGDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYT 182
            GDI  A   F +M+   +  +  TYTA+I+GF + G   +  +LF +M   G+ P   T
Sbjct: 365 RGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVT 424

Query: 183 YNTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMK 242
           +  LIN YC+ G +  AF+V + M  +G S NVVTYT LI GLC++  L  A  L   M 
Sbjct: 425 FTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMW 484

Query: 243 QVRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSS 302
           ++ + P   TYN +++G C  G +E+A+    E +  GL   +V+Y  L+  + K+G   
Sbjct: 485 KIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMD 544

Query: 303 VVSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLM 362
              E+++EM  +G+ P+ VT+ +LM+ F     +E   +L + M   G  P+  T+  L+
Sbjct: 545 KAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV 604

Query: 363 HGLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLT 422
              C++ N+  A+ +Y  M    V P+   Y  ++ G+CK  N  +A    QEM  KG +
Sbjct: 605 KQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFS 664

Query: 423 PSLTSYKSTIEVLYNEGKSTEAKCLLKEMIEAGL 455
            S+++Y   I+      K  EA+ +  +M   GL
Sbjct: 665 VSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGL 697

[Close]

BLAST of Carg22801 vs. TAIR 10
Match: AT1G05670.2 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 249.6 bits (636), Expect = 4.9e-66
Identity = 142/454 (31.28%), Postives = 237/454 (52.20%), Query Frame = 0


Query: 3   NLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWWFF 62
           N+ S+  +     Q  +++++ +   LM L+G+ P  IS++ V+    + G+L K W   
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 304

Query: 63  TEFLGRTHF--DEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCK 122
            E + R     + Y +G  I   C+   +++  E  ++M R G+ P+ V+YT LID  CK
Sbjct: 305 -EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCK 364

Query: 123 NGDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYT 182
            GDI  A   F +M+   +  +  TYTA+I+GF + G   +  +LF +M   G+ P   T
Sbjct: 365 RGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVT 424

Query: 183 YNTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMK 242
           +  LIN YC+ G +  AF+V + M  +G S NVVTYT LI GLC++  L  A  L   M 
Sbjct: 425 FTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMW 484

Query: 243 QVRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSS 302
           ++ + P   TYN +++G C  G +E+A+    E +  GL   +V+Y  L+  + K+G   
Sbjct: 485 KIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMD 544

Query: 303 VVSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLM 362
              E+++EM  +G+ P+ VT+ +LM+ F     +E   +L + M   G  P+  T+  L+
Sbjct: 545 KAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV 604

Query: 363 HGLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLT 422
              C++ N+  A+ +Y  M    V P+   Y  ++ G+CK  N  +A    QEM  KG +
Sbjct: 605 KQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFS 664

Query: 423 PSLTSYKSTIEVLYNEGKSTEAKCLLKEMIEAGL 455
            S+++Y   I+      K  EA+ +  +M   GL
Sbjct: 665 VSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGL 697

[Close]

BLAST of Carg22801 vs. TAIR 10
Match: AT1G62670.1 (rna processing factor 2 )

HSP 1 Score: 235.3 bits (599), Expect = 9.6e-62
Identity = 130/453 (28.70%), Postives = 235/453 (51.88%), Query Frame = 0


Query: 2   PNLNSHEAITSASLQSQQLEQSLNSFKLMILQGHCPSAISFNNVLGLLAKSGDLHKTWWF 61
           PN+ +  ++ +    S+++ +++     M + G+ P+ ++FN ++  L       +    
Sbjct: 149 PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 208

Query: 62  FTEFLGR-THFDEYSFGITIKAFCKNGNVSKGFELLAQMERIGLSPNVVIYTILIDACCK 121
               + +    D  ++G+ +   CK G+    F LL +ME+  L P V+IY  +ID  CK
Sbjct: 209 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 268

Query: 122 NGDIEQAKVLFSKMNDLGLVANQYTYTAMINGFFKKGYKKDGFELFEKMKLVGVLPSLYT 181
              ++ A  LF +M   G+  N  TY+++I+     G   D   L   M    + P ++T
Sbjct: 269 YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFT 328

Query: 182 YNTLINEYCRDGKLSIAFKVFDEMSTSGVSCNVVTYTILIGGLCRKRQLTKAERLFERMK 241
           ++ LI+ + ++GKL  A K++DEM    +  ++VTY+ LI G C   +L +A+++FE M 
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMV 388

Query: 242 QVRINPTTRTYNLLMDGFCNIGKLEKALGYFDELKLIGLAPTSVSYNILIAGFSKAGNSS 301
                P   TYN L+ GFC   ++E+ +  F E+   GL   +V+YNILI G  +AG+  
Sbjct: 389 SKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCD 448

Query: 302 VVSELVREMEDRGVSPSKVTYTILMDAFVRSDDVEKASQLFHLMKKVGSVPDQHTYGVLM 361
           +  E+ +EM   GV P+ +TY  L+D   ++  +EKA  +F  +++    P  +TY +++
Sbjct: 449 MAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMI 508

Query: 362 HGLCMKGNMVEASKLYNSMVEMNVEPNDVIYNIMINGYCKECNSYKALKFLQEMVNKGLT 421
            G+C  G + +   L+ ++    V+P+ V YN MI+G+C++ +  +A    +EM   G  
Sbjct: 509 EGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTL 568

Query: 422 PSLTSYKSTIEVLYNEGKSTEAKCLLKEMIEAG 454
           P+   Y + I     +G    +  L+KEM   G
Sbjct: 569 PNSGCYNTLIRARLRDGDREASAELIKEMRSCG 601

The following BLAST results are available for this feature:

BLAST of Carg22801 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011560.1	3.9e-267	100.00	Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyr...	[more]
XP_022953086.1	1.5e-266	100.00	pentatricopeptide repeat-containing protein At4g11690 [Cucurbita moschata]	[more]
KAG6571877.1	2.0e-263	98.92	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_023511558.1	4.0e-259	97.20	pentatricopeptide repeat-containing protein At4g11690 [Cucurbita pepo subsp. pep...	[more]
XP_022971940.1	3.6e-252	95.26	pentatricopeptide repeat-containing protein At4g11690 [Cucurbita maxima]	[more]

BLAST of Carg22801 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T0D6	6.8e-137	53.08	Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana OX...	[more]
Q9FIX3	8.8e-68	30.56	Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX...	[more]
Q0WVK7	6.9e-65	31.28	Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidop...	[more]
Q9SXD1	1.4e-60	28.70	Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidop...	[more]
Q9ASZ8	2.3e-60	31.15	Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg22801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GM09	7.3e-267	100.00	pentatricopeptide repeat-containing protein At4g11690 OS=Cucurbita moschata OX=3...	[more]
A0A6J1I748	1.7e-252	95.26	pentatricopeptide repeat-containing protein At4g11690 OS=Cucurbita maxima OX=366...	[more]
A0A6J1C8X2	1.0e-215	81.92	pentatricopeptide repeat-containing protein At4g11690 OS=Momordica charantia OX=...	[more]
A0A5D3C6B4	8.2e-210	77.02	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3C0B2	8.2e-210	77.02	pentatricopeptide repeat-containing protein At4g11690 OS=Cucumis melo OX=3656 GN...	[more]

BLAST of Carg22801 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11690.1	4.8e-138	53.08	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT5G39710.1	6.2e-69	30.56	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G05670.1	4.9e-66	31.28	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G05670.2	4.9e-66	31.28	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G62670.1	9.6e-62	28.70	rna processing factor 2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 106..155 e-value: 5.1E-16 score: 58.6 coord: 386..429 e-value: 7.0E-11 score: 42.2 coord: 176..225 e-value: 2.2E-19 score: 69.4 coord: 281..329 e-value: 8.0E-14 score: 51.6
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 75..104 e-value: 3.4E-4 score: 20.7
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 348..380 e-value: 7.7E-7 score: 28.7 coord: 244..274 e-value: 5.4E-7 score: 29.2
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 144..177 e-value: 5.4E-6 score: 24.3 coord: 250..275 e-value: 5.8E-6 score: 24.1 coord: 319..352 e-value: 2.2E-9 score: 34.9 coord: 284..317 e-value: 2.4E-7 score: 28.5 coord: 109..142 e-value: 5.3E-8 score: 30.6 coord: 76..108 e-value: 1.0E-4 score: 20.2 coord: 214..247 e-value: 2.9E-8 score: 31.4 coord: 354..387 e-value: 2.4E-8 score: 31.7 coord: 389..422 e-value: 2.1E-9 score: 34.9 coord: 179..213 e-value: 4.7E-9 score: 33.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 212..246 score: 12.495939
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 142..176 score: 11.520384
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 177..211 score: 12.287675
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 107..141 score: 11.91499
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 247..281 score: 11.651919
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 72..106 score: 11.432693
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 317..351 score: 11.388848
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 387..421 score: 12.254791
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 282..316 score: 11.553267
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 422..456 score: 9.20755
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 352..386 score: 11.805378
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 241..309 e-value: 1.6E-18 score: 68.9 coord: 382..453 e-value: 1.6E-15 score: 59.1 coord: 310..381 e-value: 6.7E-22 score: 79.9
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 3..122 e-value: 2.6E-22 score: 81.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 123..240 e-value: 5.5E-37 score: 129.8
None	No IPR available	PANTHER	PTHR47942:SF34	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 6..461
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 6..461
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 330..458
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 114..289

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22801-RA	Carg22801-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
biological_process	GO:0043489	RNA stabilization
cellular_component	GO:0009536	plastid
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0005515	protein binding