Carg22777 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22777
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ras GTPase-activating protein-binding protein 2-like
Location	Carg_Chr18: 41130 .. 41510 (+)
RNA-Seq Expression	Carg22777
Synteny	Carg22777

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAAGCTTCCTCCTCCCTCTTCCAAACCCTAAAGCGCTTCATCAAGAAGCCATGGGAGATCACCGGCCCTTGTGCAGATCCAGAGTACAGATCTGCCGTCCCCAGCGCCTTAGAGTACAGGGTCTTTTGCCCCGCCACTACTAAGCAGAAACCCATTGTCCCCACCTCCAATCCCCAAACCGTCTTCGACATTAAGTATTACAGCCGCGACCAGCGTCGCAATCGCCCTCCAATTCGACGCATTATCCTCAAGAAACCTGACATCGAGCAGATGATGAAGGAGACTAAGTTCGACCCTGCCGACTTCCCCAAAGTTTATCTTACTGCCGCAATCGAGGAGGATATTAATGCCCGTGGAGGTGGTTATCAGAAGTAG

mRNA sequence

ATGGCCAAAGCTTCCTCCTCCCTCTTCCAAACCCTAAAGCGCTTCATCAAGAAGCCATGGGAGATCACCGGCCCTTGTGCAGATCCAGAGTACAGATCTGCCGTCCCCAGCGCCTTAGAGTACAGGGTCTTTTGCCCCGCCACTACTAAGCAGAAACCCATTGTCCCCACCTCCAATCCCCAAACCGTCTTCGACATTAAGTATTACAGCCGCGACCAGCGTCGCAATCGCCCTCCAATTCGACGCATTATCCTCAAGAAACCTGACATCGAGCAGATGATGAAGGAGACTAAGTTCGACCCTGCCGACTTCCCCAAAGTTTATCTTACTGCCGCAATCGAGGAGGATATTAATGCCCGTGGAGGTGGTTATCAGAAGTAG

Coding sequence (CDS)

ATGGCCAAAGCTTCCTCCTCCCTCTTCCAAACCCTAAAGCGCTTCATCAAGAAGCCATGGGAGATCACCGGCCCTTGTGCAGATCCAGAGTACAGATCTGCCGTCCCCAGCGCCTTAGAGTACAGGGTCTTTTGCCCCGCCACTACTAAGCAGAAACCCATTGTCCCCACCTCCAATCCCCAAACCGTCTTCGACATTAAGTATTACAGCCGCGACCAGCGTCGCAATCGCCCTCCAATTCGACGCATTATCCTCAAGAAACCTGACATCGAGCAGATGATGAAGGAGACTAAGTTCGACCCTGCCGACTTCCCCAAAGTTTATCTTACTGCCGCAATCGAGGAGGATATTAATGCCCGTGGAGGTGGTTATCAGAAGTAG

Protein sequence

MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNPQTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINARGGGYQK

Homology

[Close]

BLAST of Carg22777 vs. NCBI nr
Match: KAG6572909.1 (hypothetical protein SDJN03_26796, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012096.1 hypothetical protein SDJN02_24847, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 260.8 bits (665), Expect = 6.2e-66
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 60
           MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP
Sbjct: 1   MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 60

Query: 61  QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 120
           QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR
Sbjct: 61  QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 120

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 121 GGGYQK 126

[Close]

BLAST of Carg22777 vs. NCBI nr
Match: XP_022954424.1 (uncharacterized protein LOC111456682 [Cucurbita moschata])

HSP 1 Score: 260.8 bits (665), Expect = 6.2e-66
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 60
           MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP
Sbjct: 63  MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 122

Query: 61  QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 120
           QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR
Sbjct: 123 QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 182

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 183 GGGYQK 188

[Close]

BLAST of Carg22777 vs. NCBI nr
Match: XP_023541320.1 (uncharacterized protein LOC111801530, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 255.4 bits (651), Expect = 2.6e-64
Identity = 122/126 (96.83%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 60
           MAKASSSLFQT+KR+IKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP
Sbjct: 23  MAKASSSLFQTVKRYIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 82

Query: 61  QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 120
           +TVFDIKYYSRDQRRNRPPIRR ILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR
Sbjct: 83  ETVFDIKYYSRDQRRNRPPIRRTILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 142

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 143 GGGYQK 148

[Close]

BLAST of Carg22777 vs. NCBI nr
Match: XP_022994128.1 (uncharacterized protein LOC111489956 [Cucurbita maxima])

HSP 1 Score: 249.2 bits (635), Expect = 1.9e-62
Identity = 120/126 (95.24%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 60
           MAKASSSLFQTLKR+IKKPWEITGPCAD EYRSAVPSALEYR+FCPATTKQKPIVPTSNP
Sbjct: 48  MAKASSSLFQTLKRYIKKPWEITGPCADSEYRSAVPSALEYRLFCPATTKQKPIVPTSNP 107

Query: 61  QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 120
           +TVFDIKYYSRDQRRNRPPIR  ILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR
Sbjct: 108 ETVFDIKYYSRDQRRNRPPIRCTILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 167

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 168 GGGYQK 173

[Close]

BLAST of Carg22777 vs. NCBI nr
Match: XP_038895860.1 (uncharacterized protein LOC120084028 [Benincasa hispida])

HSP 1 Score: 244.2 bits (622), Expect = 6.0e-61
Identity = 115/126 (91.27%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 1   MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 60
           MAKASSSLFQTLKR+ KKPWEITGPCADPEYR AVPSALEYRVFCPATTK+K IVPTSNP
Sbjct: 49  MAKASSSLFQTLKRYFKKPWEITGPCADPEYRLAVPSALEYRVFCPATTKEKAIVPTSNP 108

Query: 61  QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 120
           +TVFDIKYY+RDQRRNRPPIRR ILKKPD+E+MMKET+FDPADFPKVYLTAAIEEDINAR
Sbjct: 109 ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETRFDPADFPKVYLTAAIEEDINAR 168

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 169 GGGYQK 174

[Close]

BLAST of Carg22777 vs. ExPASy TrEMBL
Match: A0A6J1GSY9 (uncharacterized protein LOC111456682 OS=Cucurbita moschata OX=3662 GN=LOC111456682 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.0e-66
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 60
           MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP
Sbjct: 63  MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 122

Query: 61  QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 120
           QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR
Sbjct: 123 QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 182

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 183 GGGYQK 188

[Close]

BLAST of Carg22777 vs. ExPASy TrEMBL
Match: A0A6J1K4A0 (uncharacterized protein LOC111489956 OS=Cucurbita maxima OX=3661 GN=LOC111489956 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.1e-63
Identity = 120/126 (95.24%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 60
           MAKASSSLFQTLKR+IKKPWEITGPCAD EYRSAVPSALEYR+FCPATTKQKPIVPTSNP
Sbjct: 48  MAKASSSLFQTLKRYIKKPWEITGPCADSEYRSAVPSALEYRLFCPATTKQKPIVPTSNP 107

Query: 61  QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 120
           +TVFDIKYYSRDQRRNRPPIR  ILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR
Sbjct: 108 ETVFDIKYYSRDQRRNRPPIRCTILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 167

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 168 GGGYQK 173

[Close]

BLAST of Carg22777 vs. ExPASy TrEMBL
Match: A0A6J1KK07 (uncharacterized protein LOC111495303 OS=Cucurbita maxima OX=3661 GN=LOC111495303 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.5e-61
Identity = 114/126 (90.48%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 1   MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 60
           MAKASSS FQTLKR+IKKPWEITGPCADPEY+ AVPSA+EYRVFCPA+TK+K IVPTSNP
Sbjct: 1   MAKASSSFFQTLKRYIKKPWEITGPCADPEYKLAVPSAIEYRVFCPASTKEKAIVPTSNP 60

Query: 61  QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 120
           +TVFDIKYYSRDQRRNRPPIRR ILKKPD+E+MMKETKFDPADFPKVYLTAAIEEDINAR
Sbjct: 61  ETVFDIKYYSRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDINAR 120

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 121 GGGYQK 126

[Close]

BLAST of Carg22777 vs. ExPASy TrEMBL
Match: A0A6J1E7N6 (uncharacterized protein LOC111431390 OS=Cucurbita moschata OX=3662 GN=LOC111431390 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.1e-60
Identity = 113/126 (89.68%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 1   MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 60
           MAKASSS FQTLKR+IKKPWEITGPCADPEY+ AVPSA+EYRVFCPATTK+K IVPTSNP
Sbjct: 22  MAKASSSFFQTLKRYIKKPWEITGPCADPEYKLAVPSAIEYRVFCPATTKEKAIVPTSNP 81

Query: 61  QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 120
           +TVFDIKYY+RDQRRNRPPIRR ILKKPD+E+MMKETKFDPADFPKVYLTAAIEED+NAR
Sbjct: 82  ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDMNAR 141

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 142 GGGYQK 147

[Close]

BLAST of Carg22777 vs. ExPASy TrEMBL
Match: A0A5D3BI32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001440 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.1e-59
Identity = 111/126 (88.10%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 60
           MAKA+SSL QTL+R+IKKPWEITGPCADPEYRSAVPSALEYRV CPAT K+K I+PTSNP
Sbjct: 1   MAKAASSLLQTLRRYIKKPWEITGPCADPEYRSAVPSALEYRVVCPATIKEKAIIPTSNP 60

Query: 61  QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 120
           +TVFDIKYY+RDQRRNRPPIRR ILKKPD+E+MMKETKFDPADFPKVYLTAAIEED+NAR
Sbjct: 61  ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDMNAR 120

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 121 GGGYQK 126

[Close]

BLAST of Carg22777 vs. TAIR 10
Match: AT5G08060.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 172.2 bits (435), Expect = 2.7e-43
Identity = 79/127 (62.20%), Postives = 102/127 (80.31%), Query Frame = 0


Query: 1   MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 60
           ++ A+SSL Q L+R+IKKPW+ITGPCA PEY  AVP A EYR+ CPAT  ++ IVP+S+P
Sbjct: 5   VSTAASSLVQNLRRYIKKPWQITGPCAHPEYLEAVPKATEYRLRCPATIDEEAIVPSSDP 64

Query: 61  QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETK-FDPADFPKVYLTAAIEEDINA 120
           +TV++I Y+ RDQRRNRPPIRR +L K ++ QMM E K FD +DFPKVYLT  +EED++ 
Sbjct: 65  ETVYNIVYHGRDQRRNRPPIRRYVLTKDNVVQMMNEKKSFDVSDFPKVYLTTTVEEDLDT 124

Query: 121 RGGGYQK 127
           RGGGY+K
Sbjct: 125 RGGGYEK 131

The following BLAST results are available for this feature:

BLAST of Carg22777 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572909.1	6.2e-66	100.00	hypothetical protein SDJN03_26796, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022954424.1	6.2e-66	100.00	uncharacterized protein LOC111456682 [Cucurbita moschata]	[more]
XP_023541320.1	2.6e-64	96.83	uncharacterized protein LOC111801530, partial [Cucurbita pepo subsp. pepo]	[more]
XP_022994128.1	1.9e-62	95.24	uncharacterized protein LOC111489956 [Cucurbita maxima]	[more]
XP_038895860.1	6.0e-61	91.27	uncharacterized protein LOC120084028 [Benincasa hispida]	[more]

BLAST of Carg22777 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg22777 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GSY9	3.0e-66	100.00	uncharacterized protein LOC111456682 OS=Cucurbita moschata OX=3662 GN=LOC1114566...	[more]
A0A6J1K4A0	9.1e-63	95.24	uncharacterized protein LOC111489956 OS=Cucurbita maxima OX=3661 GN=LOC111489956...	[more]
A0A6J1KK07	6.5e-61	90.48	uncharacterized protein LOC111495303 OS=Cucurbita maxima OX=3661 GN=LOC111495303...	[more]
A0A6J1E7N6	1.1e-60	89.68	uncharacterized protein LOC111431390 OS=Cucurbita moschata OX=3662 GN=LOC1114313...	[more]
A0A5D3BI32	2.1e-59	88.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Carg22777 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08060.1	2.7e-43	62.20	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36391	FURRY	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22777-RA	Carg22777-RA	mRNA