Carg22462 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg22462
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr03: 826337 .. 828093 (-)
RNA-Seq ExpressionCarg22462
SyntenyCarg22462
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGATCTGCACCTGAAACTTGCTCGATGTTTAACGCTCCGACCCATATAAATACCACCTTCTTCTTCTTCCCCAACTCACTCGATCGTGTTTTCTGTGTGAACAAATTCCATTCACAGGAGGCCGTTCTGTTCTTCCTCTTCGTTCCTTTAGTTTCGTTCTCTTGCCATTTTTTTTTTCCTCTTTCAAGAGCATTCCTCACAGGAACGCTCTTCTTCAAGTTTCTTCTCAGCTTCTGGTGAGGAGACCGGCCGCTCTGCAACTTCTCTCGCTAAAGAGCTAATCGGTGAGTTCTTCTGGTGGAGGCTTTGGTGTTGTGCTTTTCTTTTTTTTGTATCTGTTTCGAATTTGTGCCTTCCTCTGGTGTTGGGAGTGTTGATTGAACATACACGGAACTTGAGCTGCGGTTTTGCCAAGAATCTCGCTGTTCTTGCTCCGTTCGGATTTTGAAGGATTTCAAAATTGTGGCCGTCATTCTGTTGTTGATTTCGTAATTATGAACTGGTGATTTTGGTTCTGTGTTTGATTCCGAGTTTTTGTGTTCGAATCGAGCTTCAGGCGGCCGAGAGTAGTGAGATTGAACCCGACGCGAACATCCTTTTCTTAGATCGTAGCTCAGATCTACCTTTCTCTGTGATTCTCAAGCGTTTTCCCCTAATTTCTTGCAGATCACGACGATTTGTGAGATTTTAATCTGATTATTCATGGACTTAACTGAAATACCTCTCCCTCCAAAAAGTTACAATAGAACGGAAACCAAGAAATTTACAATCGGAATAGAACAACGCAAAAATAATTAGGTCTGAAATCGATGAGTTGGAGAGATTCAATCTTCTACGAGATTATCGAATTTGACGGCTTCTTGATTCTCTTTTGCGTATCTGTATTGTTCTCTGTGTTTGCACTTTTCCTTTTTGCATTTCACCCTCGCTTTCTTCCAAAGATGAATTTTATTGTTTCTCTCGCTTATTAAAATCCTTGTGTGAACGAATATTCCGTGTTCATGATTTTTTTTTTCTTCCCACCCGGGGAACCGGATTAAGCCAGTTAGCGTCGTCTCCCTTCACACGGCGGTGAAGAAAAAAAATGAAATCCGTGTCTTCTTCTTCTTTCTTTCCTCCTTTTTTGTTGACCTTTTTCTCTCAACTAATAAAAATGTTTTTATTTCAAATATAATATTCCCTTGTTTTTTTTTTAAATTTTTATTTATGGTTTAACTTTTTAAATGAGTTTAAATAAAACAAATTTTTGTTTTTATTTAATATTTAAAATAATTAAACCAGATTATTTATGTTTTAATTTTTTTAATTTTTTTTAATCCTACATATATATATATATTCCCAAATAGAGCTTAAATTGGTGAAATATTTTCAATTATGAATTATTTATTCTCTGCTGTTTGCTTGCCCATAAACCAGTTTGATCTTCTCTTCAGCTTGCTGTAATAATGTCTATTTTGAGCATAAGCTTTCATATTTTTACTTTTGATTTCCTCAAAAAAAGACTCGATACCAATGGATATGTATTATTTACCTATAAACTTAGGATAAATCTCTTATAGACCCACGATCAATTTCTTAATTAGCCGTGTTGGTGTTGGTGGTGCCCAATGAAGAGGCAATCTTGATTTCTCTTATGATTTTTAGTTCAGACACTTGGGTTGAATTCCAACTTCTTATATATATATATTTTAAATTCTTTCTGATTGGCTGATGATGATTTTCTATTTTAATCTCGTGCAGCGACTGTTTGGTGA

mRNA sequence

ATGCGATCTGCACCTGAAACTTGCTCGATGTTTAACGCTCCGACCCATATAAATACCACCTTCTTCTTCTTCCCCAACTCACTCGATCAGCATTCCTCACAGGAACGCTCTTCTTCAAGTTTCTTCTCAGCTTCTGGTGAGGAGACCGGCCGCTCTGCAACTTCTCTCGCTAAAGAGCTAATCGCGACTGTTTGGTGA

Coding sequence (CDS)

ATGCGATCTGCACCTGAAACTTGCTCGATGTTTAACGCTCCGACCCATATAAATACCACCTTCTTCTTCTTCCCCAACTCACTCGATCAGCATTCCTCACAGGAACGCTCTTCTTCAAGTTTCTTCTCAGCTTCTGGTGAGGAGACCGGCCGCTCTGCAACTTCTCTCGCTAAAGAGCTAATCGCGACTGTTTGGTGA

Protein sequence

MRSAPETCSMFNAPTHINTTFFFFPNSLDQHSSQERSSSSFFSASGEETGRSATSLAKELIATVW
Homology
[Close]
BLAST of Carg22462 vs. NCBI nr
Match: KAG7033535.1 (hypothetical protein SDJN02_03257, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.5 bits (319), Expect = 4.2e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MRSAPETCSMFNAPTHINTTFFFFPNSLDQHSSQERSSSSFFSASGEETGRSATSLAKEL 60
          MRSAPETCSMFNAPTHINTTFFFFPNSLDQHSSQERSSSSFFSASGEETGRSATSLAKEL
Sbjct: 1  MRSAPETCSMFNAPTHINTTFFFFPNSLDQHSSQERSSSSFFSASGEETGRSATSLAKEL 60

Query: 61 IATVW 66
          IATVW
Sbjct: 61 IATVW 65

[Close]
BLAST of Carg22462 vs. NCBI nr
Match: KAG6603226.1 (putative galactinol--sucrose galactosyltransferase 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-13
Identity = 49/54 (90.74%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 10 MFNAPTHINTTFFFFPNSLDQHSSQERSSSSFFSASGEETGRSATSLAKELIAT 64
          MFNAPTHINTTFFFFPNSLD+    ERSSSSFFSASGEETGRSATSLAKELIAT
Sbjct: 1  MFNAPTHINTTFFFFPNSLDRVFC-ERSSSSFFSASGEETGRSATSLAKELIAT 53

The following BLAST results are available for this feature:
BLAST of Carg22462 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033535.14.2e-26100.00hypothetical protein SDJN02_03257, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6603226.11.4e-1390.74putative galactinol--sucrose galactosyltransferase 2, partial [Cucurbita argyros... [more]
BLAST of Carg22462 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg22462 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg22462 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22462-RACarg22462-RAmRNA