Carg22282 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATCCAAACAAAAAGATACCAAAAAAATGGCATTTTTAATGGGTAGAGAGTTCTTTGAGTTTCATATCACTTCCAAAATCCAAACAAAATGGCATCTTCAAGCTTCAATCTCAACCCTTTCCCTTGCTTTCCTCTTGCATTTCCTTCACTTCTCAACCCTGACCCTTCACCCAACAACCCTACTTTCAACTTCCATCAACCCCATCTAGATCCACTCTCATTTCTTCCTCCCTATTTCCCGATCGCCCACTTCTCGGCATCGGCAACGGGGAACAGTATCCAAGCTCTCGGCGACATCCCGAGTGCTCTTACGGTCGGGATGGGGACGGGGACGAGGACGGGGAAGAAGGATCGACATAGTAAGATTTATACGGCGCAGGGTTTACGGGATCGGAGAGTGAGATTATCCATCGATATAGCTCGAAAGTTCTTTGATTTGCAAGACATGTTAGGGTATGACAAAGCTAGCAAAACCCTAGAGTGGCTTTTTGGTAAATCTAGAAAAGCAATTAAAGAGCTTTCAAGGTCCAAGTATGGAAATGTTGAAGAAAAGGAGGAAGATAGTGAAAAAGTTGAGGTTTTTAATCTTCTTGCTAAAGAATCAAGAGCCAAGGCCCGAGCAAGAGCCAGGGACGACGACGACGACAACGATAAAAAGTATTATGGTCATCGGATGAGCCGCGTCGAGGAAGTTTCAGATCATTGGAGTACTGAAACTTCAAATCTATCAATGGAGGAATACTCTTTCACGAACAAGAGAAGGATTTGTGCTACCAAGTTCATCAGTGACAACGACCACGACAATATGAACCCGTGTCGGGACGACGATGCCGAAGCCTCAAAAGGGTATTTACAAGAACACTCCATGATCAAGAGGAAATGGAAAGCTTCCTCCATTGATGGCATCCCAAGTTATCCCTTTTCCAAGTAATTTCAACCATCAAAGTCTCGAAATTTCTGCTTTTTTTACCCTATAATTTCTGATTTTTCTATGTTTTTTTTGCAGGATTTGAGAGTTTAATGAAAACCCTTTTGAGAAATTAAGGATAAAATGCAGCCAAGAACGTCAAAACATGGCCTTTTTTAGATCATATTATAATAATTAAAGACTGATGATGATGTTTTTTCCTGCTTTATTAAGGTTACTAGATCATGTTTGATTTCCGTCCTTAGTTTATCCGAATATATATTGTCTCTGTCTTATGCCTATCTTCAAATGACAATAGTTTATGGTTCTGGCTGTCAATGGAGGTTGGATTTTGTGAATTTGTTGTCGGGGACATATCAATGTGTGCCAAATTAACGACGAGTTGACGTTGGGAGCATCGAGGAAGAAGTAAACGTTCTTCCTAGGGTTGCTAGATATGTCTTAAAATTACTTCTGTCATGTCCAAAATCACACTTTAGAACGTATTTCATACATTAAAAATCAATTTAATGTTATGAAATGTGAGATCTTATGTCGGTTGGA AATCCAAACAAAAAGATACCAAAAAAATGGCATTTTTAATGGGTAGAGAGTTCTTTGAGTTTCATATCACTTCCAAAATCCAAACAAAATGGCATCTTCAAGCTTCAATCTCAACCCTTTCCCTTGCTTTCCTCTTGCATTTCCTTCACTTCTCAACCCTGACCCTTCACCCAACAACCCTACTTTCAACTTCCATCAACCCCATCTAGATCCACTCTCATTTCTTCCTCCCTATTTCCCGATCGCCCACTTCTCGGCATCGGCAACGGGGAACAGTATCCAAGCTCTCGGCGACATCCCGAGTGCTCTTACGGTCGGGATGGGGACGGGGACGAGGACGGGGAAGAAGGATCGACATAGTAAGATTTATACGGCGCAGGGTTTACGGGATCGGAGAGTGAGATTATCCATCGATATAGCTCGAAAGTTCTTTGATTTGCAAGACATGTTAGGGTATGACAAAGCTAGCAAAACCCTAGAGTGGCTTTTTGGTAAATCTAGAAAAGCAATTAAAGAGCTTTCAAGGTCCAAGTATGGAAATGTTGAAGAAAAGGAGGAAGATAGTGAAAAAGTTGAGGTTTTTAATCTTCTTGCTAAAGAATCAAGAGCCAAGGCCCGAGCAAGAGCCAGGGACGACGACGACGACAACGATAAAAAGTATTATGGTCATCGGATGAGCCGCGTCGAGGAAGTTTCAGATCATTGGAGTACTGAAACTTCAAATCTATCAATGGAGGAATACTCTTTCACGAACAAGAGAAGGATTTGTGCTACCAAGTTCATCAGTGACAACGACCACGACAATATGAACCCGTGTCGGGACGACGATGCCGAAGCCTCAAAAGGGTATTTACAAGAACACTCCATGATCAAGAGGAAATGGAAAGCTTCCTCCATTGATGGCATCCCAAGTTATCCCTTTTCCAAGATTTGAGAGTTTAATGAAAACCCTTTTGAGAAATTAAGGATAAAATGCAGCCAAGAACGTCAAAACATGGCCTTTTTTAGATCATATTATAATAATTAAAGACTGATGATGATGTTTTTTCCTGCTTTATTAAGGTTACTAGATCATGTTTGATTTCCGTCCTTAGTTTATCCGAATATATATTGTCTCTGTCTTATGCCTATCTTCAAATGACAATAGTTTATGGTTCTGGCTGTCAATGGAGGTTGGATTTTGTGAATTTGTTGTCGGGGACATATCAATGTGTGCCAAATTAACGACGAGTTGACGTTGGGAGCATCGAGGAAGAAGTAAACGTTCTTCCTAGGGTTGCTAGATATGTCTTAAAATTACTTCTGTCATGTCCAAAATCACACTTTAGAACGTATTTCATACATTAAAAATCAATTTAATGTTATGAAATGTGAGATCTTATGTCGGTTGGA ATGGCATCTTCAAGCTTCAATCTCAACCCTTTCCCTTGCTTTCCTCTTGCATTTCCTTCACTTCTCAACCCTGACCCTTCACCCAACAACCCTACTTTCAACTTCCATCAACCCCATCTAGATCCACTCTCATTTCTTCCTCCCTATTTCCCGATCGCCCACTTCTCGGCATCGGCAACGGGGAACAGTATCCAAGCTCTCGGCGACATCCCGAGTGCTCTTACGGTCGGGATGGGGACGGGGACGAGGACGGGGAAGAAGGATCGACATAGTAAGATTTATACGGCGCAGGGTTTACGGGATCGGAGAGTGAGATTATCCATCGATATAGCTCGAAAGTTCTTTGATTTGCAAGACATGTTAGGGTATGACAAAGCTAGCAAAACCCTAGAGTGGCTTTTTGGTAAATCTAGAAAAGCAATTAAAGAGCTTTCAAGGTCCAAGTATGGAAATGTTGAAGAAAAGGAGGAAGATAGTGAAAAAGTTGAGGTTTTTAATCTTCTTGCTAAAGAATCAAGAGCCAAGGCCCGAGCAAGAGCCAGGGACGACGACGACGACAACGATAAAAAGTATTATGGTCATCGGATGAGCCGCGTCGAGGAAGTTTCAGATCATTGGAGTACTGAAACTTCAAATCTATCAATGGAGGAATACTCTTTCACGAACAAGAGAAGGATTTGTGCTACCAAGTTCATCAGTGACAACGACCACGACAATATGAACCCGTGTCGGGACGACGATGCCGAAGCCTCAAAAGGGTATTTACAAGAACACTCCATGATCAAGAGGAAATGGAAAGCTTCCTCCATTGATGGCATCCCAAGTTATCCCTTTTCCAAGATTTGA MASSSFNLNPFPCFPLAFPSLLNPDPSPNNPTFNFHQPHLDPLSFLPPYFPIAHFSASATGNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFGKSRKAIKELSRSKYGNVEEKEEDSEKVEVFNLLAKESRAKARARARDDDDDNDKKYYGHRMSRVEEVSDHWSTETSNLSMEEYSFTNKRRICATKFISDNDHDNMNPCRDDDAEASKGYLQEHSMIKRKWKASSIDGIPSYPFSKI Homology
BLAST of Carg22282 vs. NCBI nr
Match: KAG7017904.1 (Transcription factor TCP1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 561.6 bits (1446), Expect = 3.8e-156 Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0
BLAST of Carg22282 vs. NCBI nr
Match: KAG6581167.1 (Transcription factor TCP1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 557.4 bits (1435), Expect = 7.2e-155 Identity = 279/281 (99.29%), Postives = 280/281 (99.64%), Query Frame = 0
BLAST of Carg22282 vs. NCBI nr
Match: XP_022934583.1 (transcription factor TCP12-like [Cucurbita moschata]) HSP 1 Score: 543.9 bits (1400), Expect = 8.2e-151 Identity = 275/287 (95.82%), Postives = 279/287 (97.21%), Query Frame = 0
BLAST of Carg22282 vs. NCBI nr
Match: XP_023529034.1 (transcription factor TCP12-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 521.2 bits (1341), Expect = 5.7e-144 Identity = 267/283 (94.35%), Postives = 272/283 (96.11%), Query Frame = 0
BLAST of Carg22282 vs. NCBI nr
Match: XP_022983392.1 (transcription factor TCP12-like [Cucurbita maxima]) HSP 1 Score: 518.1 bits (1333), Expect = 4.8e-143 Identity = 264/287 (91.99%), Postives = 271/287 (94.43%), Query Frame = 0
BLAST of Carg22282 vs. ExPASy Swiss-Prot
Match: Q9FYG7 (Transcription factor TCP1 OS=Arabidopsis thaliana OX=3702 GN=TCP1 PE=1 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 4.4e-22 Identity = 59/88 (67.05%), Postives = 68/88 (77.27%), Query Frame = 0
BLAST of Carg22282 vs. ExPASy Swiss-Prot
Match: Q9SBV6 (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum linkianum OX=102601 GN=CYC PE=3 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 1.3e-21 Identity = 67/126 (53.17%), Postives = 77/126 (61.11%), Query Frame = 0
BLAST of Carg22282 vs. ExPASy Swiss-Prot
Match: O49250 (Transcription factor CYCLOIDEA OS=Antirrhinum majus OX=4151 GN=CYC PE=1 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 1.3e-21 Identity = 67/126 (53.17%), Postives = 77/126 (61.11%), Query Frame = 0
BLAST of Carg22282 vs. ExPASy Swiss-Prot
Match: Q9SBV9 (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum cirrhigerum OX=102600 GN=CYC PE=3 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 1.7e-21 Identity = 66/126 (52.38%), Postives = 77/126 (61.11%), Query Frame = 0
BLAST of Carg22282 vs. ExPASy Swiss-Prot
Match: A0AQW4 (Transcription factor TCP12 OS=Arabidopsis thaliana OX=3702 GN=TCP12 PE=2 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 2.8e-21 Identity = 61/117 (52.14%), Postives = 77/117 (65.81%), Query Frame = 0
BLAST of Carg22282 vs. ExPASy TrEMBL
Match: A0A6J1F827 (transcription factor TCP12-like OS=Cucurbita moschata OX=3662 GN=LOC111441718 PE=4 SV=1) HSP 1 Score: 543.9 bits (1400), Expect = 4.0e-151 Identity = 275/287 (95.82%), Postives = 279/287 (97.21%), Query Frame = 0
BLAST of Carg22282 vs. ExPASy TrEMBL
Match: A0A6J1IZ61 (transcription factor TCP12-like OS=Cucurbita maxima OX=3661 GN=LOC111481999 PE=4 SV=1) HSP 1 Score: 518.1 bits (1333), Expect = 2.3e-143 Identity = 264/287 (91.99%), Postives = 271/287 (94.43%), Query Frame = 0
BLAST of Carg22282 vs. ExPASy TrEMBL
Match: A0A1S3CGD1 (transcription factor TCP1 OS=Cucumis melo OX=3656 GN=LOC103500163 PE=4 SV=1) HSP 1 Score: 291.2 bits (744), Expect = 4.6e-75 Identity = 191/347 (55.04%), Postives = 215/347 (61.96%), Query Frame = 0
BLAST of Carg22282 vs. ExPASy TrEMBL
Match: A0A5D3CPM9 (Transcription factor TCP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold90G00100 PE=4 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 3.0e-74 Identity = 189/347 (54.47%), Postives = 214/347 (61.67%), Query Frame = 0
BLAST of Carg22282 vs. ExPASy TrEMBL
Match: A0A6J1GAZ6 (transcription factor CYCLOIDEA-like OS=Cucurbita moschata OX=3662 GN=LOC111452512 PE=4 SV=1) HSP 1 Score: 276.2 bits (705), Expect = 1.5e-70 Identity = 168/277 (60.65%), Postives = 187/277 (67.51%), Query Frame = 0
BLAST of Carg22282 vs. TAIR 10
Match: AT1G67260.1 (TCP family transcription factor ) HSP 1 Score: 106.7 bits (265), Expect = 3.1e-23 Identity = 59/88 (67.05%), Postives = 68/88 (77.27%), Query Frame = 0
BLAST of Carg22282 vs. TAIR 10
Match: AT1G67260.2 (TCP family transcription factor ) HSP 1 Score: 106.7 bits (265), Expect = 3.1e-23 Identity = 59/88 (67.05%), Postives = 68/88 (77.27%), Query Frame = 0
BLAST of Carg22282 vs. TAIR 10
Match: AT1G68800.1 (TCP domain protein 12 ) HSP 1 Score: 104.0 bits (258), Expect = 2.0e-22 Identity = 61/117 (52.14%), Postives = 77/117 (65.81%), Query Frame = 0
BLAST of Carg22282 vs. TAIR 10
Match: AT3G18550.1 (TCP family transcription factor ) HSP 1 Score: 79.3 bits (194), Expect = 5.3e-15 Identity = 41/88 (46.59%), Postives = 60/88 (68.18%), Query Frame = 0
BLAST of Carg22282 vs. TAIR 10
Match: AT3G18550.2 (TCP family transcription factor ) HSP 1 Score: 79.3 bits (194), Expect = 5.3e-15 Identity = 41/88 (46.59%), Postives = 60/88 (68.18%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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