Carg22282 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg22282
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor TCP12-like
LocationCarg_Chr14: 4110092 .. 4111562 (+)
RNA-Seq ExpressionCarg22282
SyntenyCarg22282
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCCAAACAAAAAGATACCAAAAAAATGGCATTTTTAATGGGTAGAGAGTTCTTTGAGTTTCATATCACTTCCAAAATCCAAACAAAATGGCATCTTCAAGCTTCAATCTCAACCCTTTCCCTTGCTTTCCTCTTGCATTTCCTTCACTTCTCAACCCTGACCCTTCACCCAACAACCCTACTTTCAACTTCCATCAACCCCATCTAGATCCACTCTCATTTCTTCCTCCCTATTTCCCGATCGCCCACTTCTCGGCATCGGCAACGGGGAACAGTATCCAAGCTCTCGGCGACATCCCGAGTGCTCTTACGGTCGGGATGGGGACGGGGACGAGGACGGGGAAGAAGGATCGACATAGTAAGATTTATACGGCGCAGGGTTTACGGGATCGGAGAGTGAGATTATCCATCGATATAGCTCGAAAGTTCTTTGATTTGCAAGACATGTTAGGGTATGACAAAGCTAGCAAAACCCTAGAGTGGCTTTTTGGTAAATCTAGAAAAGCAATTAAAGAGCTTTCAAGGTCCAAGTATGGAAATGTTGAAGAAAAGGAGGAAGATAGTGAAAAAGTTGAGGTTTTTAATCTTCTTGCTAAAGAATCAAGAGCCAAGGCCCGAGCAAGAGCCAGGGACGACGACGACGACAACGATAAAAAGTATTATGGTCATCGGATGAGCCGCGTCGAGGAAGTTTCAGATCATTGGAGTACTGAAACTTCAAATCTATCAATGGAGGAATACTCTTTCACGAACAAGAGAAGGATTTGTGCTACCAAGTTCATCAGTGACAACGACCACGACAATATGAACCCGTGTCGGGACGACGATGCCGAAGCCTCAAAAGGGTATTTACAAGAACACTCCATGATCAAGAGGAAATGGAAAGCTTCCTCCATTGATGGCATCCCAAGTTATCCCTTTTCCAAGTAATTTCAACCATCAAAGTCTCGAAATTTCTGCTTTTTTTACCCTATAATTTCTGATTTTTCTATGTTTTTTTTGCAGGATTTGAGAGTTTAATGAAAACCCTTTTGAGAAATTAAGGATAAAATGCAGCCAAGAACGTCAAAACATGGCCTTTTTTAGATCATATTATAATAATTAAAGACTGATGATGATGTTTTTTCCTGCTTTATTAAGGTTACTAGATCATGTTTGATTTCCGTCCTTAGTTTATCCGAATATATATTGTCTCTGTCTTATGCCTATCTTCAAATGACAATAGTTTATGGTTCTGGCTGTCAATGGAGGTTGGATTTTGTGAATTTGTTGTCGGGGACATATCAATGTGTGCCAAATTAACGACGAGTTGACGTTGGGAGCATCGAGGAAGAAGTAAACGTTCTTCCTAGGGTTGCTAGATATGTCTTAAAATTACTTCTGTCATGTCCAAAATCACACTTTAGAACGTATTTCATACATTAAAAATCAATTTAATGTTATGAAATGTGAGATCTTATGTCGGTTGGA

mRNA sequence

AATCCAAACAAAAAGATACCAAAAAAATGGCATTTTTAATGGGTAGAGAGTTCTTTGAGTTTCATATCACTTCCAAAATCCAAACAAAATGGCATCTTCAAGCTTCAATCTCAACCCTTTCCCTTGCTTTCCTCTTGCATTTCCTTCACTTCTCAACCCTGACCCTTCACCCAACAACCCTACTTTCAACTTCCATCAACCCCATCTAGATCCACTCTCATTTCTTCCTCCCTATTTCCCGATCGCCCACTTCTCGGCATCGGCAACGGGGAACAGTATCCAAGCTCTCGGCGACATCCCGAGTGCTCTTACGGTCGGGATGGGGACGGGGACGAGGACGGGGAAGAAGGATCGACATAGTAAGATTTATACGGCGCAGGGTTTACGGGATCGGAGAGTGAGATTATCCATCGATATAGCTCGAAAGTTCTTTGATTTGCAAGACATGTTAGGGTATGACAAAGCTAGCAAAACCCTAGAGTGGCTTTTTGGTAAATCTAGAAAAGCAATTAAAGAGCTTTCAAGGTCCAAGTATGGAAATGTTGAAGAAAAGGAGGAAGATAGTGAAAAAGTTGAGGTTTTTAATCTTCTTGCTAAAGAATCAAGAGCCAAGGCCCGAGCAAGAGCCAGGGACGACGACGACGACAACGATAAAAAGTATTATGGTCATCGGATGAGCCGCGTCGAGGAAGTTTCAGATCATTGGAGTACTGAAACTTCAAATCTATCAATGGAGGAATACTCTTTCACGAACAAGAGAAGGATTTGTGCTACCAAGTTCATCAGTGACAACGACCACGACAATATGAACCCGTGTCGGGACGACGATGCCGAAGCCTCAAAAGGGTATTTACAAGAACACTCCATGATCAAGAGGAAATGGAAAGCTTCCTCCATTGATGGCATCCCAAGTTATCCCTTTTCCAAGATTTGAGAGTTTAATGAAAACCCTTTTGAGAAATTAAGGATAAAATGCAGCCAAGAACGTCAAAACATGGCCTTTTTTAGATCATATTATAATAATTAAAGACTGATGATGATGTTTTTTCCTGCTTTATTAAGGTTACTAGATCATGTTTGATTTCCGTCCTTAGTTTATCCGAATATATATTGTCTCTGTCTTATGCCTATCTTCAAATGACAATAGTTTATGGTTCTGGCTGTCAATGGAGGTTGGATTTTGTGAATTTGTTGTCGGGGACATATCAATGTGTGCCAAATTAACGACGAGTTGACGTTGGGAGCATCGAGGAAGAAGTAAACGTTCTTCCTAGGGTTGCTAGATATGTCTTAAAATTACTTCTGTCATGTCCAAAATCACACTTTAGAACGTATTTCATACATTAAAAATCAATTTAATGTTATGAAATGTGAGATCTTATGTCGGTTGGA

Coding sequence (CDS)

ATGGCATCTTCAAGCTTCAATCTCAACCCTTTCCCTTGCTTTCCTCTTGCATTTCCTTCACTTCTCAACCCTGACCCTTCACCCAACAACCCTACTTTCAACTTCCATCAACCCCATCTAGATCCACTCTCATTTCTTCCTCCCTATTTCCCGATCGCCCACTTCTCGGCATCGGCAACGGGGAACAGTATCCAAGCTCTCGGCGACATCCCGAGTGCTCTTACGGTCGGGATGGGGACGGGGACGAGGACGGGGAAGAAGGATCGACATAGTAAGATTTATACGGCGCAGGGTTTACGGGATCGGAGAGTGAGATTATCCATCGATATAGCTCGAAAGTTCTTTGATTTGCAAGACATGTTAGGGTATGACAAAGCTAGCAAAACCCTAGAGTGGCTTTTTGGTAAATCTAGAAAAGCAATTAAAGAGCTTTCAAGGTCCAAGTATGGAAATGTTGAAGAAAAGGAGGAAGATAGTGAAAAAGTTGAGGTTTTTAATCTTCTTGCTAAAGAATCAAGAGCCAAGGCCCGAGCAAGAGCCAGGGACGACGACGACGACAACGATAAAAAGTATTATGGTCATCGGATGAGCCGCGTCGAGGAAGTTTCAGATCATTGGAGTACTGAAACTTCAAATCTATCAATGGAGGAATACTCTTTCACGAACAAGAGAAGGATTTGTGCTACCAAGTTCATCAGTGACAACGACCACGACAATATGAACCCGTGTCGGGACGACGATGCCGAAGCCTCAAAAGGGTATTTACAAGAACACTCCATGATCAAGAGGAAATGGAAAGCTTCCTCCATTGATGGCATCCCAAGTTATCCCTTTTCCAAGATTTGA

Protein sequence

MASSSFNLNPFPCFPLAFPSLLNPDPSPNNPTFNFHQPHLDPLSFLPPYFPIAHFSASATGNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFGKSRKAIKELSRSKYGNVEEKEEDSEKVEVFNLLAKESRAKARARARDDDDDNDKKYYGHRMSRVEEVSDHWSTETSNLSMEEYSFTNKRRICATKFISDNDHDNMNPCRDDDAEASKGYLQEHSMIKRKWKASSIDGIPSYPFSKI
Homology
BLAST of Carg22282 vs. NCBI nr
Match: KAG7017904.1 (Transcription factor TCP1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 561.6 bits (1446), Expect = 3.8e-156
Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0

Query: 1   MASSSFNLNPFPCFPLAFPSLLNPDPSPNNPTFNFHQPHLDPLSFLPPYFPIAHFSASAT 60
           MASSSFNLNPFPCFPLAFPSLLNPDPSPNNPTFNFHQPHLDPLSFLPPYFPIAHFSASAT
Sbjct: 1   MASSSFNLNPFPCFPLAFPSLLNPDPSPNNPTFNFHQPHLDPLSFLPPYFPIAHFSASAT 60

Query: 61  GNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDM 120
           GNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDM
Sbjct: 61  GNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDM 120

Query: 121 LGYDKASKTLEWLFGKSRKAIKELSRSKYGNVEEKEEDSEKVEVFNLLAKESRAKARARA 180
           LGYDKASKTLEWLFGKSRKAIKELSRSKYGNVEEKEEDSEKVEVFNLLAKESRAKARARA
Sbjct: 121 LGYDKASKTLEWLFGKSRKAIKELSRSKYGNVEEKEEDSEKVEVFNLLAKESRAKARARA 180

Query: 181 RDDDDDNDKKYYGHRMSRVEEVSDHWSTETSNLSMEEYSFTNKRRICATKFISDNDHDNM 240
           RDDDDDNDKKYYGHRMSRVEEVSDHWSTETSNLSMEEYSFTNKRRICATKFISDNDHDNM
Sbjct: 181 RDDDDDNDKKYYGHRMSRVEEVSDHWSTETSNLSMEEYSFTNKRRICATKFISDNDHDNM 240

Query: 241 NPCRDDDAEASKGYLQEHSMIKRKWKASSIDGIPSYPFSKI 282
           NPCRDDDAEASKGYLQEHSMIKRKWKASSIDGIPSYPFSKI
Sbjct: 241 NPCRDDDAEASKGYLQEHSMIKRKWKASSIDGIPSYPFSKI 281

BLAST of Carg22282 vs. NCBI nr
Match: KAG6581167.1 (Transcription factor TCP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 557.4 bits (1435), Expect = 7.2e-155
Identity = 279/281 (99.29%), Postives = 280/281 (99.64%), Query Frame = 0

Query: 1   MASSSFNLNPFPCFPLAFPSLLNPDPSPNNPTFNFHQPHLDPLSFLPPYFPIAHFSASAT 60
           MASSSFNLNPFPCFPLAFPSLLNPDPSPNNPTFNFHQPHLDPLSFLPPYFPIAHFSASAT
Sbjct: 1   MASSSFNLNPFPCFPLAFPSLLNPDPSPNNPTFNFHQPHLDPLSFLPPYFPIAHFSASAT 60

Query: 61  GNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDM 120
           GNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDM
Sbjct: 61  GNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDM 120

Query: 121 LGYDKASKTLEWLFGKSRKAIKELSRSKYGNVEEKEEDSEKVEVFNLLAKESRAKARARA 180
           LGYDKASKTLEWLFGKSRKAIKELSRSKYGNVEEKEEDSEKVEVFNLLAKESRAKARARA
Sbjct: 121 LGYDKASKTLEWLFGKSRKAIKELSRSKYGNVEEKEEDSEKVEVFNLLAKESRAKARARA 180

Query: 181 RDDDDDNDKKYYGHRMSRVEEVSDHWSTETSNLSMEEYSFTNKRRICATKFISDNDHDNM 240
           RDDDDDNDKKYYGHRMSRVEEVSDHWSTETSNLSMEEYSFTNKRRICATKFI DND+DNM
Sbjct: 181 RDDDDDNDKKYYGHRMSRVEEVSDHWSTETSNLSMEEYSFTNKRRICATKFIGDNDNDNM 240

Query: 241 NPCRDDDAEASKGYLQEHSMIKRKWKASSIDGIPSYPFSKI 282
           NPCRDDDAEASKGYLQEHSMIKRKWKASSIDGIPSYPFSKI
Sbjct: 241 NPCRDDDAEASKGYLQEHSMIKRKWKASSIDGIPSYPFSKI 281

BLAST of Carg22282 vs. NCBI nr
Match: XP_022934583.1 (transcription factor TCP12-like [Cucurbita moschata])

HSP 1 Score: 543.9 bits (1400), Expect = 8.2e-151
Identity = 275/287 (95.82%), Postives = 279/287 (97.21%), Query Frame = 0

Query: 1   MASSSFNLNPFPCFPLAFPSLLNPDPSPNNPTFNFHQPHLDPLSFLPPYFPIAHFSASAT 60
           MASSSFNLNPFPCFPLAFPSLLNPDPSPNNPTFNFHQPHLDPLSFLPPYFPIAHFSASAT
Sbjct: 1   MASSSFNLNPFPCFPLAFPSLLNPDPSPNNPTFNFHQPHLDPLSFLPPYFPIAHFSASAT 60

Query: 61  GNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDM 120
           GNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDM
Sbjct: 61  GNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDM 120

Query: 121 LGYDKASKTLEWLFGKSRKAIKELSRSKYGNVEEKEEDSEKVEVFNLLAKESRAKARARA 180
           LGYDKASKTLEWLFGKSRKAIKELSRSKYGNVEEKEEDSEKVEVFNLLAKESRAKARARA
Sbjct: 121 LGYDKASKTLEWLFGKSRKAIKELSRSKYGNVEEKEEDSEKVEVFNLLAKESRAKARARA 180

Query: 181 RDD------DDDNDKKYYGHRMSRVEEVSDHWSTETSNLSMEEYSFTNKRRICATKFISD 240
           R+D      D+DNDKKYYGHRMSRVEEVSDHWST+TSNLSMEEYSFTNKRRICATKFI D
Sbjct: 181 REDDNDNDNDNDNDKKYYGHRMSRVEEVSDHWSTQTSNLSMEEYSFTNKRRICATKFIGD 240

Query: 241 NDHDNMNPCRDDDAEASKGYLQEHSMIKRKWKASSIDGIPSYPFSKI 282
           ND+DNM PCRDDDAEASKGYLQEHSMIKRKWKASSIDGIPSYPFSKI
Sbjct: 241 NDNDNMKPCRDDDAEASKGYLQEHSMIKRKWKASSIDGIPSYPFSKI 287

BLAST of Carg22282 vs. NCBI nr
Match: XP_023529034.1 (transcription factor TCP12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 521.2 bits (1341), Expect = 5.7e-144
Identity = 267/283 (94.35%), Postives = 272/283 (96.11%), Query Frame = 0

Query: 1   MASSSFNLNPFPCFPLAFPSLLNPDPSPNNPTFNFHQPHLDPLSFLPPYFPIAHFSASAT 60
           MASSSFNLNPFPCFPLAFPSLLN DPSPNNPTFNFHQPHLDPLSFLPPYFPIAHFSASAT
Sbjct: 1   MASSSFNLNPFPCFPLAFPSLLNSDPSPNNPTFNFHQPHLDPLSFLPPYFPIAHFSASAT 60

Query: 61  GNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDM 120
           GNS QALGDIPSALTV  GTGTRTGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDM
Sbjct: 61  GNSSQALGDIPSALTV--GTGTRTGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDM 120

Query: 121 LGYDKASKTLEWLFGKSRKAIKELSRSKYGNVEEKEEDSEKVEVFNLLAKESRAKARARA 180
           LGYDKASKTLEWLFGKSRKAIKELSRSKYGNVEEKEEDSEKVEVFNLLAKESRAKARARA
Sbjct: 121 LGYDKASKTLEWLFGKSRKAIKELSRSKYGNVEEKEEDSEKVEVFNLLAKESRAKARARA 180

Query: 181 RDDDDDND--KKYYGHRMSRVEEVSDHWSTETSNLSMEEYSFTNKRRICATKFISDNDHD 240
           RDDDDDND  +KYYGHRMS VEEVS+HWSTETSNLSMEEYSFTNKRRICATKF  D+D+D
Sbjct: 181 RDDDDDNDNNRKYYGHRMSGVEEVSEHWSTETSNLSMEEYSFTNKRRICATKFTGDDDND 240

Query: 241 NMNPCRDDDAEASKGYLQEHSMIKRKWKASSIDGIPSYPFSKI 282
           +M PCRDDDAEASKGYLQE SMIKRKWKASSIDGIPSYPFSKI
Sbjct: 241 DMKPCRDDDAEASKGYLQERSMIKRKWKASSIDGIPSYPFSKI 281

BLAST of Carg22282 vs. NCBI nr
Match: XP_022983392.1 (transcription factor TCP12-like [Cucurbita maxima])

HSP 1 Score: 518.1 bits (1333), Expect = 4.8e-143
Identity = 264/287 (91.99%), Postives = 271/287 (94.43%), Query Frame = 0

Query: 1   MASSSFNLNPFPCFPLAFPSLLNPDPSPNNPTFNFHQPHLDPLSFLPPYFPIAHFSASAT 60
           MASSSFNLNPFPCFPLAFPSLLN DPSPNNPTFNF+QPHLDPLSFLPPYFPIAHFSASAT
Sbjct: 1   MASSSFNLNPFPCFPLAFPSLLNHDPSPNNPTFNFNQPHLDPLSFLPPYFPIAHFSASAT 60

Query: 61  GNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDM 120
           GNSIQALGDIPSALTVG GTGTR GKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDM
Sbjct: 61  GNSIQALGDIPSALTVGTGTGTRMGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDM 120

Query: 121 LGYDKASKTLEWLFGKSRKAIKELSRSKYGNVEEKEEDSEKVEVFNLLAKESRAKARARA 180
           LGYDKASKTLEWLFGKSRKAIKELSRSKYGNVE+KEEDSEKVEVFNLLAKESRAKARARA
Sbjct: 121 LGYDKASKTLEWLFGKSRKAIKELSRSKYGNVEDKEEDSEKVEVFNLLAKESRAKARARA 180

Query: 181 RDDDD------DNDKKYYGHRMSRVEEVSDHWSTETSNLSMEEYSFTNKRRICATKFISD 240
            DDDD      DNDKKYYGH+MS VEEVSDHWSTETSNLSMEEYSF NKRRICA KFI  
Sbjct: 181 TDDDDDNDNDNDNDKKYYGHQMSHVEEVSDHWSTETSNLSMEEYSFMNKRRICAIKFIGG 240

Query: 241 NDHDNMNPCRDDDAEASKGYLQEHSMIKRKWKASSIDGIPSYPFSKI 282
           +D++NM PCRDDDAEASKG+LQEHSMIKRKWKASSIDGIPSYPFSKI
Sbjct: 241 DDNENMKPCRDDDAEASKGHLQEHSMIKRKWKASSIDGIPSYPFSKI 287

BLAST of Carg22282 vs. ExPASy Swiss-Prot
Match: Q9FYG7 (Transcription factor TCP1 OS=Arabidopsis thaliana OX=3702 GN=TCP1 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.4e-22
Identity = 59/88 (67.05%), Postives = 68/88 (77.27%), Query Frame = 0

Query: 86  KKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFGKSRKAIKELS 145
           KKDRHSKI TAQG+RDRRVRLSI IAR+FFDLQDMLG+DKASKTL+WL  KSRKAIKE+ 
Sbjct: 87  KKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAIKEVV 146

Query: 146 RSK--------YGNV-------EEKEED 159
           ++K        +GN+       EEKEED
Sbjct: 147 QAKNLNNDDEDFGNIGGDVEQEEEKEED 174

BLAST of Carg22282 vs. ExPASy Swiss-Prot
Match: Q9SBV6 (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum linkianum OX=102601 GN=CYC PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-21
Identity = 67/126 (53.17%), Postives = 77/126 (61.11%), Query Frame = 0

Query: 86  KKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFGKSRKAIKEL- 145
           KKDRHSKIYT+QG RDRRVRLSI IARKFFDLQ+MLG+DK SKTL+WL  KS+ AIKEL 
Sbjct: 79  KKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAIKELV 138

Query: 146 -SRSKYGNVEEKEEDSEKV---------------------------EVFNLLAKESRAKA 183
            S+S   N     +D E+V                           +     AKESRAKA
Sbjct: 139 QSKSTKSNSSSPCDDCEEVVSVDSENVTDHSKGKSLKANNKCKEAMDSHQAAAKESRAKA 198

BLAST of Carg22282 vs. ExPASy Swiss-Prot
Match: O49250 (Transcription factor CYCLOIDEA OS=Antirrhinum majus OX=4151 GN=CYC PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-21
Identity = 67/126 (53.17%), Postives = 77/126 (61.11%), Query Frame = 0

Query: 86  KKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFGKSRKAIKEL- 145
           KKDRHSKIYT+QG RDRRVRLSI IARKFFDLQ+MLG+DK SKTL+WL  KS+ AIKEL 
Sbjct: 87  KKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAIKELV 146

Query: 146 -SRSKYGNVEEKEEDSEKV---------------------------EVFNLLAKESRAKA 183
            S+S   N     +D E+V                           +     AKESRAKA
Sbjct: 147 QSKSTKSNSSSPCDDCEEVVSVDSENVTDHSKGKSLKANNKCKEAMDSHQAAAKESRAKA 206

BLAST of Carg22282 vs. ExPASy Swiss-Prot
Match: Q9SBV9 (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum cirrhigerum OX=102600 GN=CYC PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.7e-21
Identity = 66/126 (52.38%), Postives = 77/126 (61.11%), Query Frame = 0

Query: 86  KKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFGKSRKAIKEL- 145
           KKDRHSKIYT+QG RDRRVRLSI IARKFFDLQ+MLG+DK SKTL+WL  KS+ A+KEL 
Sbjct: 79  KKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAVKELV 138

Query: 146 -SRSKYGNVEEKEEDSEKV---------------------------EVFNLLAKESRAKA 183
            S+S   N     +D E+V                           +     AKESRAKA
Sbjct: 139 QSKSTKSNSSSPCDDCEEVVSVESENVTDHSKGKSLKANNKCKEAMDSHQAAAKESRAKA 198

BLAST of Carg22282 vs. ExPASy Swiss-Prot
Match: A0AQW4 (Transcription factor TCP12 OS=Arabidopsis thaliana OX=3702 GN=TCP12 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.8e-21
Identity = 61/117 (52.14%), Postives = 77/117 (65.81%), Query Frame = 0

Query: 86  KKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFGKSRKAIKEL- 145
           K+DRHSKI TAQG RDRR+RLS+ IARKFFDLQDMLG+DKASKT+EWLF KS+ +IK+L 
Sbjct: 112 KRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKTSIKQLK 171

Query: 146 ---------SRSKYGNVEEKEEDS----------EKVEVFNLLAKESRAKARARARD 183
                     + ++  V+EKE+D            K    +   KESR +AR RAR+
Sbjct: 172 ERVAASEGGGKDEHLQVDEKEKDETLKLRVSKRRTKTMESSFKTKESRERARKRARE 228

BLAST of Carg22282 vs. ExPASy TrEMBL
Match: A0A6J1F827 (transcription factor TCP12-like OS=Cucurbita moschata OX=3662 GN=LOC111441718 PE=4 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 4.0e-151
Identity = 275/287 (95.82%), Postives = 279/287 (97.21%), Query Frame = 0

Query: 1   MASSSFNLNPFPCFPLAFPSLLNPDPSPNNPTFNFHQPHLDPLSFLPPYFPIAHFSASAT 60
           MASSSFNLNPFPCFPLAFPSLLNPDPSPNNPTFNFHQPHLDPLSFLPPYFPIAHFSASAT
Sbjct: 1   MASSSFNLNPFPCFPLAFPSLLNPDPSPNNPTFNFHQPHLDPLSFLPPYFPIAHFSASAT 60

Query: 61  GNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDM 120
           GNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDM
Sbjct: 61  GNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDM 120

Query: 121 LGYDKASKTLEWLFGKSRKAIKELSRSKYGNVEEKEEDSEKVEVFNLLAKESRAKARARA 180
           LGYDKASKTLEWLFGKSRKAIKELSRSKYGNVEEKEEDSEKVEVFNLLAKESRAKARARA
Sbjct: 121 LGYDKASKTLEWLFGKSRKAIKELSRSKYGNVEEKEEDSEKVEVFNLLAKESRAKARARA 180

Query: 181 RDD------DDDNDKKYYGHRMSRVEEVSDHWSTETSNLSMEEYSFTNKRRICATKFISD 240
           R+D      D+DNDKKYYGHRMSRVEEVSDHWST+TSNLSMEEYSFTNKRRICATKFI D
Sbjct: 181 REDDNDNDNDNDNDKKYYGHRMSRVEEVSDHWSTQTSNLSMEEYSFTNKRRICATKFIGD 240

Query: 241 NDHDNMNPCRDDDAEASKGYLQEHSMIKRKWKASSIDGIPSYPFSKI 282
           ND+DNM PCRDDDAEASKGYLQEHSMIKRKWKASSIDGIPSYPFSKI
Sbjct: 241 NDNDNMKPCRDDDAEASKGYLQEHSMIKRKWKASSIDGIPSYPFSKI 287

BLAST of Carg22282 vs. ExPASy TrEMBL
Match: A0A6J1IZ61 (transcription factor TCP12-like OS=Cucurbita maxima OX=3661 GN=LOC111481999 PE=4 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 2.3e-143
Identity = 264/287 (91.99%), Postives = 271/287 (94.43%), Query Frame = 0

Query: 1   MASSSFNLNPFPCFPLAFPSLLNPDPSPNNPTFNFHQPHLDPLSFLPPYFPIAHFSASAT 60
           MASSSFNLNPFPCFPLAFPSLLN DPSPNNPTFNF+QPHLDPLSFLPPYFPIAHFSASAT
Sbjct: 1   MASSSFNLNPFPCFPLAFPSLLNHDPSPNNPTFNFNQPHLDPLSFLPPYFPIAHFSASAT 60

Query: 61  GNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDM 120
           GNSIQALGDIPSALTVG GTGTR GKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDM
Sbjct: 61  GNSIQALGDIPSALTVGTGTGTRMGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDM 120

Query: 121 LGYDKASKTLEWLFGKSRKAIKELSRSKYGNVEEKEEDSEKVEVFNLLAKESRAKARARA 180
           LGYDKASKTLEWLFGKSRKAIKELSRSKYGNVE+KEEDSEKVEVFNLLAKESRAKARARA
Sbjct: 121 LGYDKASKTLEWLFGKSRKAIKELSRSKYGNVEDKEEDSEKVEVFNLLAKESRAKARARA 180

Query: 181 RDDDD------DNDKKYYGHRMSRVEEVSDHWSTETSNLSMEEYSFTNKRRICATKFISD 240
            DDDD      DNDKKYYGH+MS VEEVSDHWSTETSNLSMEEYSF NKRRICA KFI  
Sbjct: 181 TDDDDDNDNDNDNDKKYYGHQMSHVEEVSDHWSTETSNLSMEEYSFMNKRRICAIKFIGG 240

Query: 241 NDHDNMNPCRDDDAEASKGYLQEHSMIKRKWKASSIDGIPSYPFSKI 282
           +D++NM PCRDDDAEASKG+LQEHSMIKRKWKASSIDGIPSYPFSKI
Sbjct: 241 DDNENMKPCRDDDAEASKGHLQEHSMIKRKWKASSIDGIPSYPFSKI 287

BLAST of Carg22282 vs. ExPASy TrEMBL
Match: A0A1S3CGD1 (transcription factor TCP1 OS=Cucumis melo OX=3656 GN=LOC103500163 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 4.6e-75
Identity = 191/347 (55.04%), Postives = 215/347 (61.96%), Query Frame = 0

Query: 1   MASSSFNLNPFPCF-------------PLAFPSLLNPDPSPNN-PTFNF-HQPHLDPLSF 60
           M SSS+N NPFPCF             PL+ PSLLN DPS NN  T NF HQPH DPLSF
Sbjct: 1   MGSSSYNPNPFPCFPSSSSSTTNSYNLPLSIPSLLNFDPSSNNTSTVNFHHQPHQDPLSF 60

Query: 61  LPPYFPIAHFSA-----------SATGNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIY 120
           L PYFPIAHFS            +  GN+IQALGD+      G GT T  GKKDRHSKIY
Sbjct: 61  LAPYFPIAHFSTLTPPETAVINFAVAGNNIQALGDMVVPSAPGAGT-TGMGKKDRHSKIY 120

Query: 121 TAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFGKSRKAIKELSRSK------ 180
           TAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLF KSRKAIKELSR+K      
Sbjct: 121 TAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSRKAIKELSRTKNVGFHG 180

Query: 181 ----------YGNVEEKEED---------------------SEKVEVFNLLAKESRAKAR 240
                       +VEE+ +D                      EKVE+FNL+AKESRAKAR
Sbjct: 181 GAKKLSLAAASSDVEEEYDDDKGWELKMKSMLRIDEQEKVSKEKVEIFNLVAKESRAKAR 240

Query: 241 ARARDDDDD----NDKKYYGHRMSRVEEVSDHW------STETSNLSMEEYSFTNKRRIC 273
           ARAR+   +    +D K YGH+    +EVSDHW      STETSNLSMEE SF NKR+I 
Sbjct: 241 ARARERTMEKKQVDDSKVYGHQKGGAQEVSDHWSKHLNHSTETSNLSMEESSFMNKRKIY 300

BLAST of Carg22282 vs. ExPASy TrEMBL
Match: A0A5D3CPM9 (Transcription factor TCP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold90G00100 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 3.0e-74
Identity = 189/347 (54.47%), Postives = 214/347 (61.67%), Query Frame = 0

Query: 1   MASSSFNLNPFPCF-------------PLAFPSLLNPDPSPNN-PTFNF-HQPHLDPLSF 60
           M SSS+N NPFPCF             PL+ PSLLN DPS NN  T NF HQPH DPLSF
Sbjct: 1   MGSSSYNPNPFPCFPSSSSSTTNSYNLPLSIPSLLNFDPSSNNTSTVNFHHQPHQDPLSF 60

Query: 61  LPPYFPIAHFSA-----------SATGNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIY 120
           L PYFPIAHFS            +  GN+IQALGD+      G GT T  GKKDRH+KIY
Sbjct: 61  LAPYFPIAHFSTLTPPETAVINFAVAGNNIQALGDMVVPSAPGAGT-TGMGKKDRHTKIY 120

Query: 121 TAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFGKSRKAIKELSRSK------ 180
           TAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLF KSRKAIKELSR+K      
Sbjct: 121 TAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSRKAIKELSRTKNVGFHG 180

Query: 181 ----------YGNVEEKEED---------------------SEKVEVFNLLAKESRAKAR 240
                       +VEE+ +D                      EKVE+FNL+AKESRAKAR
Sbjct: 181 GAKKLSLAAASSDVEEEYDDDKGWELKMKSMLRIDEQEKVSKEKVEIFNLVAKESRAKAR 240

Query: 241 ARARDDDDD----NDKKYYGHRMSRVEEVSDHW------STETSNLSMEEYSFTNKRRIC 273
            RAR+   +    +D K YGH+    +EVSDHW      STETSNLSMEE SF NKR+I 
Sbjct: 241 TRARERTMEKKQVDDSKVYGHQKGGAQEVSDHWSKHLNHSTETSNLSMEESSFMNKRKIY 300

BLAST of Carg22282 vs. ExPASy TrEMBL
Match: A0A6J1GAZ6 (transcription factor CYCLOIDEA-like OS=Cucurbita moschata OX=3662 GN=LOC111452512 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 1.5e-70
Identity = 168/277 (60.65%), Postives = 187/277 (67.51%), Query Frame = 0

Query: 1   MASSSFNLNPFPCF----------PLAFPSLLNPDPSPNNPTFNFHQPHLDPLSFLPPYF 60
           M SSS+NLNPFP F          PL+ PSLLN +PSP   TFNFHQPH DP+SFL PYF
Sbjct: 1   MGSSSYNLNPFPYFPSSSTASYNLPLSIPSLLNSEPSPT--TFNFHQPHQDPVSFLAPYF 60

Query: 61  PIAHFSASAT----------GNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIYTAQGLR 120
           PI HFS S T          G+++QA G+IPSA    MG    TGKKDRHSKIYTAQGLR
Sbjct: 61  PIGHFSTSTTPEAVINFAVAGSNVQAFGNIPSAPGARMG----TGKKDRHSKIYTAQGLR 120

Query: 121 DRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFGKSRKAIKELSRSKYGN--------- 180
           DRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLF KS+KAIKELSR+KYGN         
Sbjct: 121 DRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRTKYGNFEVVGGARR 180

Query: 181 ------VEEKEEDSEKVEVFNLLAKESRAKARARAR------DDDDDNDKKYYGHRMSRV 237
                 VEE+EE + KVEVFNLLAK+SRAKA+ + R      DDDDDND K   H     
Sbjct: 181 MSLASDVEEEEEMTNKVEVFNLLAKQSRAKAKEKKRVDDENGDDDDDNDGKIDVH----- 240

BLAST of Carg22282 vs. TAIR 10
Match: AT1G67260.1 (TCP family transcription factor )

HSP 1 Score: 106.7 bits (265), Expect = 3.1e-23
Identity = 59/88 (67.05%), Postives = 68/88 (77.27%), Query Frame = 0

Query: 86  KKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFGKSRKAIKELS 145
           KKDRHSKI TAQG+RDRRVRLSI IAR+FFDLQDMLG+DKASKTL+WL  KSRKAIKE+ 
Sbjct: 87  KKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAIKEVV 146

Query: 146 RSK--------YGNV-------EEKEED 159
           ++K        +GN+       EEKEED
Sbjct: 147 QAKNLNNDDEDFGNIGGDVEQEEEKEED 174

BLAST of Carg22282 vs. TAIR 10
Match: AT1G67260.2 (TCP family transcription factor )

HSP 1 Score: 106.7 bits (265), Expect = 3.1e-23
Identity = 59/88 (67.05%), Postives = 68/88 (77.27%), Query Frame = 0

Query: 86  KKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFGKSRKAIKELS 145
           KKDRHSKI TAQG+RDRRVRLSI IAR+FFDLQDMLG+DKASKTL+WL  KSRKAIKE+ 
Sbjct: 87  KKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAIKEVV 146

Query: 146 RSK--------YGNV-------EEKEED 159
           ++K        +GN+       EEKEED
Sbjct: 147 QAKNLNNDDEDFGNIGGDVEQEEEKEED 174

BLAST of Carg22282 vs. TAIR 10
Match: AT1G68800.1 (TCP domain protein 12 )

HSP 1 Score: 104.0 bits (258), Expect = 2.0e-22
Identity = 61/117 (52.14%), Postives = 77/117 (65.81%), Query Frame = 0

Query: 86  KKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFGKSRKAIKEL- 145
           K+DRHSKI TAQG RDRR+RLS+ IARKFFDLQDMLG+DKASKT+EWLF KS+ +IK+L 
Sbjct: 112 KRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKTSIKQLK 171

Query: 146 ---------SRSKYGNVEEKEEDS----------EKVEVFNLLAKESRAKARARARD 183
                     + ++  V+EKE+D            K    +   KESR +AR RAR+
Sbjct: 172 ERVAASEGGGKDEHLQVDEKEKDETLKLRVSKRRTKTMESSFKTKESRERARKRARE 228

BLAST of Carg22282 vs. TAIR 10
Match: AT3G18550.1 (TCP family transcription factor )

HSP 1 Score: 79.3 bits (194), Expect = 5.3e-15
Identity = 41/88 (46.59%), Postives = 60/88 (68.18%), Query Frame = 0

Query: 58  SATGNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDL 117
           S T N I+    I ++    M    +  + DRHSKI TA+G RDRR+RLS+D+A++ F L
Sbjct: 120 SETINLIEDSQRISTSQDPKMKKAKKPSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGL 179

Query: 118 QDMLGYDKASKTLEWLFGKSRKAIKELS 146
           QDMLG+DKASKT+EWL  +++  I +++
Sbjct: 180 QDMLGFDKASKTVEWLLTQAKPEIIKIA 207

BLAST of Carg22282 vs. TAIR 10
Match: AT3G18550.2 (TCP family transcription factor )

HSP 1 Score: 79.3 bits (194), Expect = 5.3e-15
Identity = 41/88 (46.59%), Postives = 60/88 (68.18%), Query Frame = 0

Query: 58  SATGNSIQALGDIPSALTVGMGTGTRTGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDL 117
           S T N I+    I ++    M    +  + DRHSKI TA+G RDRR+RLS+D+A++ F L
Sbjct: 120 SETINLIEDSQRISTSQDPKMKKAKKPSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGL 179

Query: 118 QDMLGYDKASKTLEWLFGKSRKAIKELS 146
           QDMLG+DKASKT+EWL  +++  I +++
Sbjct: 180 QDMLGFDKASKTVEWLLTQAKPEIIKIA 207

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7017904.13.8e-156100.00Transcription factor TCP1 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6581167.17.2e-15599.29Transcription factor TCP1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022934583.18.2e-15195.82transcription factor TCP12-like [Cucurbita moschata][more]
XP_023529034.15.7e-14494.35transcription factor TCP12-like [Cucurbita pepo subsp. pepo][more]
XP_022983392.14.8e-14391.99transcription factor TCP12-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q9FYG74.4e-2267.05Transcription factor TCP1 OS=Arabidopsis thaliana OX=3702 GN=TCP1 PE=1 SV=1[more]
Q9SBV61.3e-2153.17Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum linkianum OX=102601 GN=... [more]
O492501.3e-2153.17Transcription factor CYCLOIDEA OS=Antirrhinum majus OX=4151 GN=CYC PE=1 SV=1[more]
Q9SBV91.7e-2152.38Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum cirrhigerum OX=102600 G... [more]
A0AQW42.8e-2152.14Transcription factor TCP12 OS=Arabidopsis thaliana OX=3702 GN=TCP12 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1F8274.0e-15195.82transcription factor TCP12-like OS=Cucurbita moschata OX=3662 GN=LOC111441718 PE... [more]
A0A6J1IZ612.3e-14391.99transcription factor TCP12-like OS=Cucurbita maxima OX=3661 GN=LOC111481999 PE=4... [more]
A0A1S3CGD14.6e-7555.04transcription factor TCP1 OS=Cucumis melo OX=3656 GN=LOC103500163 PE=4 SV=1[more]
A0A5D3CPM93.0e-7454.47Transcription factor TCP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A6J1GAZ61.5e-7060.65transcription factor CYCLOIDEA-like OS=Cucurbita moschata OX=3662 GN=LOC11145251... [more]
Match NameE-valueIdentityDescription
AT1G67260.13.1e-2367.05TCP family transcription factor [more]
AT1G67260.23.1e-2367.05TCP family transcription factor [more]
AT1G68800.12.0e-2252.14TCP domain protein 12 [more]
AT3G18550.15.3e-1546.59TCP family transcription factor [more]
AT3G18550.25.3e-1546.59TCP family transcription factor [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017887Transcription factor TCP subgroupPFAMPF03634TCPcoord: 84..154
e-value: 2.7E-34
score: 119.0
IPR017887Transcription factor TCP subgroupPROSITEPS51369TCPcoord: 86..144
score: 35.21637
IPR005333Transcription factor, TCPPANTHERPTHR31072TRANSCRIPTION FACTOR TCP4-RELATEDcoord: 154..253
IPR005333Transcription factor, TCPPANTHERPTHR31072TRANSCRIPTION FACTOR TCP4-RELATEDcoord: 82..162
NoneNo IPR availablePANTHERPTHR31072:SF87TRANSCRIPTION FACTOR TCP1coord: 154..253
NoneNo IPR availablePANTHERPTHR31072:SF87TRANSCRIPTION FACTOR TCP1coord: 82..162
IPR017888CYC/TB1, R domainPROSITEPS51370Rcoord: 170..189
score: 8.55051

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22282-RACarg22282-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003700 DNA-binding transcription factor activity