Carg22152 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg22152
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr08: 2309228 .. 2310676 (+)
RNA-Seq ExpressionCarg22152
SyntenyCarg22152
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACATAGCTCCCGGCACCGAGGTCGTTCGAGTTAATTTACTCCAGGTTTGTCGTCGAGCTGTGGACATTCTAAGTTTTTTCTTTTATGTTGGCTGCATAACTATATATCTTCCTTTTCATTTATTGGCAGTTTCTGTATATATCCTTGCACAAGTCATTGAACTCGGTTTGTATAGATTAAAGAAGGCTCGACGTTCTTTTCTAGAGAAGAACGAACAAAACGACGGGGAAGATGGGAGCTTATCGTCGTCCTACACGATCAGCTGGAACGTGCAATAATCATGGTAATTTCTTTCTTTCTTGTCAATTATGACGCTTGTTCATAATTGATGGTATAACTTGTTCATACTTTTCTTGGTTTGTTGATCCATTGTTCTTGGCTGGAAGGCTTGTAGTTTGGTTCTGTAATAGGCTGTGTTTTGCTTGAGTTCTTGCCCACGCTTGTTCCACCTCTAGTAGAAGGGATCATGTGGAGTCTCATAGCTGTCTCTGTCTCTGTGCGTGCATGCCAGTAGATATTGTCTTCTTTGAGTTTTCCATACCTTTATAAAGAATGCTTTGTTCTCCTCCCTAGCCGACGTGGAATCTTACAATTCCACCCTCTTTGGGGTTCAGCGTCCTCGTTGACACTCGTTATTCTTTCCAATTGATATGGGATCTCACAATCTACCCACCTTCGGAGTCTAATGTCCTTGCAGGCACTCGTTCCTCTCTCCAATTGTTGTGGGAGATCACAATTTACCCATCTTCGAGGCTCAGTATCCTTGCTGGTACACTGGCTGGTGTCTGGCTCTGATACGATTTGTAACATCCTAACCCCACCACTAGCCGATATTGTTCTCTTTGGACTTTCCCTTTCGAGCTTTCTCTCAAGGTTTTTAAAATACATCTGTTAGGGAGAGGTTTTCACACCCTTATAAAAAAATGTTTTGTTCTCCTCCCTAACCGATGTGGGATCTCACAATCCACCTTTTTTGGGGTCCAGCGTCCTCGCTGGCACTCGTTCCCCTCTCTAATTGATATGGGATTTCACAATCCACCCACCTTCTGAGCCTAGCGTCTTTGCTGACACTTGTTCCTCTCTTCAGGTCTCAGTATCATTGTTGGTACACTGTTCAATGTCTAGCTCTAAAGTGAAGCGTATTTTATTGAACACTTAATAAAGTGGTAATGCTATGATTAATCTCTGACACTGTGGGTTGCAGGTTGCAGGTTGTGTGTTGGAGGAGATGAGATGGGTGTACGTACAGAGCAGCACAGAGGCTTTCACTGTCCTTTCTCTCTGATTGTGTGTGTACTTAGTTGCTCTAATGAAGACATGAGCTAAGTAAGCCATTGAGGGTTAAATGTAACACTCCCAGCCCCCCCAAAGGGATTAAAAAAAAATAACCCAATTTTGTTTATGTTAATTATGATCATGGTAAATAAATTTTTTATGTTTATTAA

mRNA sequence

ATGCACATAGCTCCCGGCACCGAGGTCGTTCGAGTTAATTTACTCCAGTTTCTGTATATATCCTTGCACAAGTCATTGAACTCGATTAAAGAAGGCTCGACGTTCTTTTCTAGAGAAGAACGAACAAAACGACGGGGAAGATGGGAGCTTATCGTCGTCCTACACGATCAGCTGGAACGTGCAATAATCATGGTTGCAGGTTGTGTGTTGGAGGAGATGAGATGGGTGTACGTACAGAGCAGCACAGAGGCTTTCACTGTCCTTTCTCTCTGATTGTGTGTGTACTTAGTTGCTCTAATGAAGACATGAGCTAAGTAAGCCATTGAGGGTTAAATGTAACACTCCCAGCCCCCCCAAAGGGATTAAAAAAAAATAACCCAATTTTGTTTATGTTAATTATGATCATGGTAAATAAATTTTTTATGTTTATTAA

Coding sequence (CDS)

ATGCACATAGCTCCCGGCACCGAGGTCGTTCGAGTTAATTTACTCCAGTTTCTGTATATATCCTTGCACAAGTCATTGAACTCGATTAAAGAAGGCTCGACGTTCTTTTCTAGAGAAGAACGAACAAAACGACGGGGAAGATGGGAGCTTATCGTCGTCCTACACGATCAGCTGGAACGTGCAATAATCATGGTTGCAGGTTGTGTGTTGGAGGAGATGAGATGGGTGTACGTACAGAGCAGCACAGAGGCTTTCACTGTCCTTTCTCTCTGA

Protein sequence

MHIAPGTEVVRVNLLQFLYISLHKSLNSIKEGSTFFSREERTKRRGRWELIVVLHDQLERAIIMVAGCVLEEMRWVYVQSSTEAFTVLSL
Homology
[Close]
BLAST of Carg22152 vs. NCBI nr
Match: KAG7025570.1 (hypothetical protein SDJN02_12067, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.6 bits (449), Expect = 4.9e-41
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MHIAPGTEVVRVNLLQFLYISLHKSLNSIKEGSTFFSREERTKRRGRWELIVVLHDQLER 60
          MHIAPGTEVVRVNLLQFLYISLHKSLNSIKEGSTFFSREERTKRRGRWELIVVLHDQLER
Sbjct: 1  MHIAPGTEVVRVNLLQFLYISLHKSLNSIKEGSTFFSREERTKRRGRWELIVVLHDQLER 60

Query: 61 AIIMVAGCVLEEMRWVYVQSSTEAFTVLSL 91
          AIIMVAGCVLEEMRWVYVQSSTEAFTVLSL
Sbjct: 61 AIIMVAGCVLEEMRWVYVQSSTEAFTVLSL 90

The following BLAST results are available for this feature:
BLAST of Carg22152 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025570.14.9e-41100.00hypothetical protein SDJN02_12067, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg22152 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg22152 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg22152 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22152-RACarg22152-RAmRNA