![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Carg21996 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AACCGTCTCCCTTGCGAGTTCCGAGCCCCTAATCGCTCCTAAATTCTCACTAATTCTCAGCTCCCTTTCTTCGGTTTCCCCTCGCCACCGATCTCTCTCTCGAATCTTACTCGGCTGCTTCCACTTCTAGGTTCGTTCACGATTCGATTTTGGTGAGCTTGTAATGACGATTATAATAGCTATACTCCCACTTTTGTCCATTACTGATGTTCAGGGGTCTTCGTTCTTCCAGATATGGGGCTGTATTACGGAGCTAAAGAGGTCCTAAAGATTCAAAAGTTTCGAAGACTTGTGTCCTATACTGGATTCTATCTCTTCGTTTCCGTTTTGAGTTACGCTTATACAAGCAATACGTGAGTTCAGACATTGCTCTTTAATTTTGTCCACTTTTTTGTTCTCTGATTTTTGTTCGGGGTATTGCAGAACTAGAGCTGGATATTCTCGAGGGGATCAATTTTATGCTTCTTACCCTGCTGGTACAGAGCTCTTGACAGACACTACGAAGGTTTTTGCGTCCTTTGATTTGGGTTTCATACTCTTTTGATGTTCAGAACTCTTGTGCTAATTTTCATTTTGTTTGCTGTAGTTGTACAAAGCTGCTCTTGGGAATTGTTTTGAAATAGAAGAATGGGGTCCAATTGAATTCTGCGTCATGGCTAAACATTTTGAACGTCAAGGAAAATCGCCTTATGCATATCATTCTGTAAGTTTGCCTCGTCTTTTGGTTGTTCTCTTTCTAGTTTGGTACGTAATTATGATTCCTGCTGAGTGTTGAATTGTTTTGTATTACACTGATTTCTGGTCAGATTTTTAGTTCAGTTTAATGATTCCAATGTGGGAATTAGGAGAACAAATCATATGGAAGTTATGTAAGTGCATGAAACTCTGAAATTTGCTGCTTTGTTAAGAGTTAAGAAATGTTGTTAAGATGAAAGAATACCCTTTTATGAAGTCATTGATGACAATGAAATGAGGAGATTATGATAATTTATAGCCTTTGTTCTCTGTTCAACTAGGGAGAAAGATTTATAAAGCTCTATTGCCAGTTTGGAATTAGCTGGAGTGATTATAGTTGTATAGTTGTTCCATCTGTAGGTATACAAATTTTAAGATGCTGTCTAAATGAACTGTAGTCTAATTATGGGCATTAACTATTTCTGAAGTGAAGGTCGAGCTATGCAACAAACCAAGGGTATAACATGTTAGGATCACAATAACAAGAAAACATTAATAGAACTGTATTGCAATATCAATAGAAATTACAATACCAATATAGTCTTTTGAGAGGGCTGTCCCCCAAAATTCCTGCACTAAGACAATGAAGCAAAAACATTTTCCCTTTTCTAAGAAAACCCTAACACCCGGATTTATGACCAATACACACCAGACTAATAACAAATACACCCCTTACTAACTACCACTATATCCTTGCTTATATGCCCAGCTTGTTCCTTACAAGTACTCAAACTCACATGAACACTTGAGAAGAAAGCTATATATAAGATGGAACGAATATCATCACATGTTTCGGATCAGAAATGGAGCTTTTTCTGGTGCATATTTATCATATCCTCTAACTATGTTTGTGAGGCTGTACACAATGGAAGTCCACATCCAGGGAATTACCACTATAGCTCATTTTTTGTTTAAATTCTGGCAGCAATACATGGCACATCTTCTGTCTCATGGACAACTTGATGGAAGTGGGTAGGAAAACACCAATCAACAACCAAAGAGCTTTGAGACTGTTTACTACCATGATGGGGCTGCGCACTTCAATACTAAAATTCTAATTTTTTGAAATTGAAGCATTGTTGTAGGTTTGAGCATAGATAGCTCAATTGATCATGATTACACGAATAACTTCACTTATGGGTCTTAGGTTCGAATCATCGCCCCTTTGTTTGATTTGTATTATTCTTTGAATATATATGGATCGGCTGTTAGGCATTGTATGTTACTAATTATACCAGAACATAAATAAGACTTGATCTTCCCCTCTTCCATTATTCCTAAATAACATATAATAATTATACATTTTCATTTGAAAAATTATATCCAACTGTTACTTAATGATTTCAATAACCATTCAATAACCATACTAGTGGTTGGAAGGAGATCTCTCTAAATCAGTCAACGCCTCCCCCATCATCTTTTTTCTGGGATGCGAATGACACTTATTGTCATCGTCTTTACCGTCCGCCTCCCCCATCATCTTTTTTCTTAGTTGA AACCGTCTCCCTTGCGAGTTCCGAGCCCCTAATCGCTCCTAAATTCTCACTAATTCTCAGCTCCCTTTCTTCGGTTTCCCCTCGCCACCGATCTCTCTCTCGAATCTTACTCGGCTGCTTCCACTTCTAGATATGGGGCTGTATTACGGAGCTAAAGAGGTCCTAAAGATTCAAAAGTTTCGAAGACTTGTGTCCTATACTGGATTCTATCTCTTCGTTTCCGTTTTGAGTTACGCTTATACAAGCAATACAACTAGAGCTGGATATTCTCGAGGGGATCAATTTTATGCTTCTTACCCTGCTGGTACAGAGCTCTTGACAGACACTACGAAGTTGTACAAAGCTGCTCTTGGGAATTGTTTTGAAATAGAAGAATGGGGTCCAATTGAATTCTGCGTCATGGCTAAACATTTTGAACGTCAAGGAAAATCGCCTTATGCATATCATTCTCAATACATGGCACATCTTCTGTCTCATGGACAACTTGATGGAAGTGGGTAGGAAAACACCAATCAACAACCAAAGAGCTTTGAGACTGTTTACTACCATGATGGGGCTGCGCACTTCAATACTAAAATTCTAATTTTTTGAAATTGAAGCATTGTTGTAGGTTTGAGCATAGATAGCTCAATTGATCATGATTACACGAATAACTTCACTTATGGGTCTTAGGTTCGAATCATCGCCCCTTTGTTTGATTTGTATTATTCTTTGAATATATATGGATCGGCTGTTAGGCATTGTATGTTACTAATTATACCAGAACATAAATAAGACTTGATCTTCCCCTCTTCCATTATTCCTAAATAACATATAATAATTATACATTTTCATTTGAAAAATTATATCCAACTGTTACTTAATGATTTCAATAACCATTCAATAACCATACTAGTGGTTGGAAGGAGATCTCTCTAAATCAGTCAACGCCTCCCCCATCATCTTTTTTCTGGGATGCGAATGACACTTATTGTCATCGTCTTTACCGTCCGCCTCCCCCATCATCTTTTTTCTTAGTTGA ATGGGGCTGTATTACGGAGCTAAAGAGGTCCTAAAGATTCAAAAGTTTCGAAGACTTGTGTCCTATACTGGATTCTATCTCTTCGTTTCCGTTTTGAGTTACGCTTATACAAGCAATACAACTAGAGCTGGATATTCTCGAGGGGATCAATTTTATGCTTCTTACCCTGCTGGTACAGAGCTCTTGACAGACACTACGAAGTTGTACAAAGCTGCTCTTGGGAATTGTTTTGAAATAGAAGAATGGGGTCCAATTGAATTCTGCGTCATGGCTAAACATTTTGAACGTCAAGGAAAATCGCCTTATGCATATCATTCTCAATACATGGCACATCTTCTGTCTCATGGACAACTTGATGGAAGTGGGTAG MGLYYGAKEVLKIQKFRRLVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTELLTDTTKLYKAALGNCFEIEEWGPIEFCVMAKHFERQGKSPYAYHSQYMAHLLSHGQLDGSG Homology
BLAST of Carg21996 vs. NCBI nr
Match: XP_022942452.1 (uncharacterized protein LOC111447487 [Cucurbita moschata] >XP_022942453.1 uncharacterized protein LOC111447487 [Cucurbita moschata] >XP_022942454.1 uncharacterized protein LOC111447487 [Cucurbita moschata] >XP_023534356.1 uncharacterized protein LOC111795941 [Cucurbita pepo subsp. pepo] >XP_023534363.1 uncharacterized protein LOC111795941 [Cucurbita pepo subsp. pepo] >KAG7030572.1 hypothetical protein SDJN02_04609 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 254.2 bits (648), Expect = 5.6e-64 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
BLAST of Carg21996 vs. NCBI nr
Match: KAG6599887.1 (hypothetical protein SDJN03_05120, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 254.2 bits (648), Expect = 5.6e-64 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
BLAST of Carg21996 vs. NCBI nr
Match: XP_022976595.1 (uncharacterized protein LOC111476941 [Cucurbita maxima] >XP_022976600.1 uncharacterized protein LOC111476941 [Cucurbita maxima] >XP_022976608.1 uncharacterized protein LOC111476941 [Cucurbita maxima]) HSP 1 Score: 251.1 bits (640), Expect = 4.8e-63 Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0
BLAST of Carg21996 vs. NCBI nr
Match: XP_004149132.1 (uncharacterized protein LOC101204884 [Cucumis sativus] >KGN49556.1 hypothetical protein Csa_018495 [Cucumis sativus]) HSP 1 Score: 246.1 bits (627), Expect = 1.5e-61 Identity = 115/122 (94.26%), Postives = 120/122 (98.36%), Query Frame = 0
BLAST of Carg21996 vs. NCBI nr
Match: XP_038893132.1 (uncharacterized protein LOC120082001 [Benincasa hispida] >XP_038893133.1 uncharacterized protein LOC120082001 [Benincasa hispida] >XP_038893134.1 uncharacterized protein LOC120082001 [Benincasa hispida] >XP_038893135.1 uncharacterized protein LOC120082001 [Benincasa hispida] >XP_038893136.1 uncharacterized protein LOC120082001 [Benincasa hispida]) HSP 1 Score: 244.2 bits (622), Expect = 5.8e-61 Identity = 116/122 (95.08%), Postives = 120/122 (98.36%), Query Frame = 0
BLAST of Carg21996 vs. ExPASy TrEMBL
Match: A0A6J1FUV5 (uncharacterized protein LOC111447487 OS=Cucurbita moschata OX=3662 GN=LOC111447487 PE=4 SV=1) HSP 1 Score: 254.2 bits (648), Expect = 2.7e-64 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
BLAST of Carg21996 vs. ExPASy TrEMBL
Match: A0A6J1IJX1 (uncharacterized protein LOC111476941 OS=Cucurbita maxima OX=3661 GN=LOC111476941 PE=4 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 2.3e-63 Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0
BLAST of Carg21996 vs. ExPASy TrEMBL
Match: A0A0A0KPE6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G001030 PE=4 SV=1) HSP 1 Score: 246.1 bits (627), Expect = 7.4e-62 Identity = 115/122 (94.26%), Postives = 120/122 (98.36%), Query Frame = 0
BLAST of Carg21996 vs. ExPASy TrEMBL
Match: A0A6J1DA58 (uncharacterized protein LOC111018291 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018291 PE=4 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 2.8e-61 Identity = 115/122 (94.26%), Postives = 119/122 (97.54%), Query Frame = 0
BLAST of Carg21996 vs. ExPASy TrEMBL
Match: A0A6J1D9J7 (uncharacterized protein LOC111018291 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018291 PE=4 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 2.8e-61 Identity = 115/122 (94.26%), Postives = 119/122 (97.54%), Query Frame = 0
BLAST of Carg21996 vs. TAIR 10
Match: AT1G14990.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 204.9 bits (520), Expect = 3.7e-53 Identity = 93/114 (81.58%), Postives = 103/114 (90.35%), Query Frame = 0
BLAST of Carg21996 vs. TAIR 10
Match: AT1G14990.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. ) HSP 1 Score: 196.8 bits (499), Expect = 9.9e-51 Identity = 93/124 (75.00%), Postives = 103/124 (83.06%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|