Carg21955 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21955
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 3161247 .. 3162874 (-)
RNA-Seq ExpressionCarg21955
SyntenyCarg21955
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAATAGCCAATCCCCAGTGCCAAGTATAGGGCCGTTGGACTTAGCTATCTTATTGAAGGTTAGCCATTCCATTACTTCGAGAAAACATTGTCGTGTTGTTGTATCAATTAAAATGAGATAGGATTATGATTTTGCTTCCGGGGTATCTTTGAAAACATATCTTTGTGAACTATTAACCATTTCGTTTGCCCGTATGTGCACTGTTTTCTCAGTTGAACTATCTTCTTCAATCCTGTCATCTCTTTGCGACTCTGATTACTCCCCTAGAATGCATGTGAGACAATATTTTGCTTTCAGCAAATAAAGTGTGTTAAATTAAACCTGAAAGCCTTGGCCCTTGATTCCTTTTAAATAGCATACAAGCATCGTCAATTCCGCATGTAGTTGGAACATTTTCTTGTGGGTTTAGGGTTCTTTCTTTTCATTTATGCTATATAGTTTCCACAGCTTGTTTCTGTTTCTTTTAAACTCAACTAGATAATTGTGTACCCACTTTGTTTCAAAGGGCATCAAGAAAAATTGTTGGGCAACCTTGTTTTCGTACTTAATGTTGATGTGTAGCCGAAAGATGATGGCAGGGTACATTTTTCTTTTAATGTTGATTGGAGATTTCTAATCGACATGGTAAGAAGAAGAAATACGGGTATTTAGACCGATTTTCGTGTTGAATGATCTATTGATTTTCTTGAAATATCAGTTATCATTAGACAATGGTATAAGCTTCATTAGGGTTTTGTGATTAAAGAGTTTGAGTTTGATGATAACTTTCTTCCCATTGTCTCTCTTATTCTCTCATTTACGGCCTTCACATGATAATTTATAGGATCTTTGACTTGGGGTTTCTACTTGTTTTCTGATATGATACTAGATGTTCAATCAAAAATACTTTTAAATTTGAGAATCGAACGATCTGATACCGACCGAACCGTATTAACAATTTCCTTTACGAGGAACTTAAATATATAGGAATTCATACTAAGTTTGCACAATCTTCAAAATTCTTAGTTTATTCATAATGTTCAACTCATATTCACTCTATCACGAAGTCACGGGTATGCACGTATGCAAACAATTCAACCTACTCATTTAAGTACGCTACTAATCAACATTAATATGACATTTATGATAACTAAACTTAGATTTGTACGTCCAGGGAATCATAAAGATGTATCTATAGAAGGGTTGAACAATAAAGATGTATCTATAGAAGGGTTGAACAGCCATTGATAACTATTATAAATGAAATCAGAGCCAAATATCAGACGGTGTATCAGTAAGGACGCTGACCTCCAAGAGGTGAATTGTGTGTGAGTTGGAGAGGGGAACGAAGCATTCGTTATAAGAATGAGGAAAATTTCCCTCATCAGTTGGAGAGGGGAAATTTCCAAAGAAAAAGCACAAATAAAATAATGGCGATGGACTTGACCAATTACATTTTTGTTTTTTGGGAACATTGGACTTGTTGTCACCGAGCCAACTAAGAGACATTGTTTCTTATTCATAATGGAGTGAACGTTTCTTCATGTGGTTGTATTAACTTCTTACCTTAACGGTTAATAGAATTTGGAAGCTACTTCAATAGCTCAAGAACTCCAACAACAAGTTAGATCGTTGTTAAGTTGA

mRNA sequence

ATGATCAATAGCCAATCCCCAGTGCCAAGTATAGGGCCGTTGGACTTAGCTATCTTATTGAAGCCGAAAGATGATGGCAGGGTACATTTTTCTTTTAATGTTGATTGGAGATTTCTAATCGACATGAATTTGGAAGCTACTTCAATAGCTCAAGAACTCCAACAACAAGTTAGATCGTTGTTAAGTTGA

Coding sequence (CDS)

ATGATCAATAGCCAATCCCCAGTGCCAAGTATAGGGCCGTTGGACTTAGCTATCTTATTGAAGCCGAAAGATGATGGCAGGGTACATTTTTCTTTTAATGTTGATTGGAGATTTCTAATCGACATGAATTTGGAAGCTACTTCAATAGCTCAAGAACTCCAACAACAAGTTAGATCGTTGTTAAGTTGA

Protein sequence

MINSQSPVPSIGPLDLAILLKPKDDGRVHFSFNVDWRFLIDMNLEATSIAQELQQQVRSLLS
Homology
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BLAST of Carg21955 vs. NCBI nr
Match: KAG7021942.1 (hypothetical protein SDJN02_15670, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.2 bits (313), Expect = 2.0e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MINSQSPVPSIGPLDLAILLKPKDDGRVHFSFNVDWRFLIDMNLEATSIAQELQQQVRSL 60
          MINSQSPVPSIGPLDLAILLKPKDDGRVHFSFNVDWRFLIDMNLEATSIAQELQQQVRSL
Sbjct: 1  MINSQSPVPSIGPLDLAILLKPKDDGRVHFSFNVDWRFLIDMNLEATSIAQELQQQVRSL 60

Query: 61 LS 63
          LS
Sbjct: 61 LS 62

The following BLAST results are available for this feature:
BLAST of Carg21955 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021942.12.0e-25100.00hypothetical protein SDJN02_15670, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg21955 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21955 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21955 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21955-RACarg21955-RAmRNA