Carg21951 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21951
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	THO complex subunit 6
Location	Carg_Chr11: 3175904 .. 3184128 (-)
RNA-Seq Expression	Carg21951
Synteny	Carg21951

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCCAATGCATTCATTGCCTTCACGATCCTGGCAGCCAATTGCTTCGGTAAGTTCCTCCGGCGAGCCGTCGAAGGGCGTCTTCTGATTGTCTGACGCAATTTTTAGCTCTAACGCCGCTGCAACAGAGTTCATAGCTTCGCCATTGTCGTTTTAAGCTAACATTTGAGAGGCTGGAAAAGGAGCCATAGCAAGCGGTCGTAAAATGTTAGGGGACGCGACGAATTGGGACGAGGATGCCTACAGAGAGAGTCTATACAAAGAGAGAGAGGTACAAACTCGGACGGTGTTCAGAACTGCGTGGGCGCCGTCTTTAAGTGGTTGCCCTGAGTCCATCGTGGTCGCCTCCAGTGATGGATCCATTGCCTCTTATTCTATCGCTTCCTGCATCTCTAAGCTGGTAATCTTTCTTATTTTCGGTATTGATATTGGTTTTGTTGTTTGTTGTTTGTTTTTTTGCTTATTCAATCAGTATCTGAAGGGCGTGGAATAGTGAACCTTAAGGGAGGTTGTTCGAGGGCTTCTTTGTTTAGACTGAACTAATAGGATTGCCAAAGGGCGGGGTAGAAATACCGAATTCCCAAGCCAAAGAAGGCTACGGGATGCTCTTCTAAATGATAGAAAGAGAATTGAAAAGGCTATGAATGATGATTACAGAAAGGATCATAAAGAGTGAATAATCTAATAGGAGTTACTAGAATAAGATTGTCCAAAAGACTTCTTCAAGTGGCTCCAGAGGCAATTGTGTGTTATAATCCGCAAATGGCTACAAAAGGCGCTAGCTAGTTGCAATGAAAGGATCTAATTCTTCTTGAGCATCGAGAGGGGGAGAGAGGAGGCCCCTCATATCCTAGAAAAGAGCTGCGTGCCACTTAAAATTTAGAAGCATGAAGTTCCAAATTTTATTGTCGAAGCGATAAGTAGGAAGGGTGGCCATTCGACCCATGAGCGCATTTACAAATGCAACACCTACCATGGGAGAGGGAACGCGAAAGAAATCTCCTTTGAATCTTATTGTGAACGTTGATGCCTTTGTGAATTGTGATCAAGCTCTCTTAAGAAGAATTCGAGGTATTAAAGATATCTAGGCCTCCAAATAGTATATCGAAGGCGAAGAGCCAGTGGAGCTCAATTAAAAGCAGGTATTTGAGTAAAAACTTATGAGAGAAATCTGATAAGGATCGACTGCCACATCCATTTCTCAATATCATTGGTGAAAGAGAAATTCAACAAAAGGCTGGTAGCATTGGTCCCATGTTCCAAAAATTGTTTTCTAAAATTGAGATCCCAATTGAGAGAAATTGGGTTCCAAGCTTCTTTGATGGGCACACTTTCCTTACATAAAAGGGAGAAAAGTCTGGGGAAAACCAAATAAAGAGGGTCAGAACCAGCCCAATAATTCCTCACGAGCTAGTATGCATAACATTGCTAACTGAGCATTTGGTTCTAAAGGAGATCAAATCTTTGAGAGCATAAATAGCACACTGTGGACCTATTTGGAAGAGTGAAGATAGAACCCGACCTATGGACATCTAAAGTGATGCCATACTTGGCCATAATGAGCTTCCTCCAAAGAGCTTCATTGCTTTCACGCTCGTTTCTTGTGCATGATGGAGATATTTGATGAAGTTATAAACGATGAATCAAATTCTTTAGGAATTAGGATTCTAGGATTCAAATTCTTTCCGTTTCCAAGATTAAAACTTCATTGAAAGAAGTGGTTTGTTTTATGACCACATTAGTCCTACCATTTCAGAGTTTTATCATGAGTTGTAGAATACTTGCCACTTCTTACAATTGATTGATTTAAACAGAATATTCAACTACAGAAGCAAAATAAGTTTACTTTATGGTGTTCAGTGCTTGTGCCCCTGAAAAGTTCCTCTTTCTTCTTGATTGTGGTGTGCGTCTTTTTCTTTATAGTTTAGTACTTTGAATTCTTAACCTGATTACACCTCTGTTTCATGCCTATTTCAGCATTCTGGTTATGGCAATACTAAAAGGCAAGTACATTTTATCTTGGTCTCAATTTATTTTAAAATTTGGGGCTGCAAACTCGTACTTATTGTTTACGTTGTGCCTTACTCTAGTTTGCTGGCAGCAGAGCCTCATTGCTTTCTACAAGGGCACGATGGACCCACATATGATGTTAAATTTTTTGATGCTGGCGACAATACTTTATTACTGAGGTTTCTCTCAACCCCAGTACTATATCGTTAATTGCATTTGTCGTCTCATCGTAATTATCTCAATGCTGATTCGAAAGTTAATTTGAATATTTATCCATGTATGTACGAATGTGTATATGTAGGTAAAATTGTAGTTGGGTGCAGAACCAGTTTAATGCTACTTTTTAGAAAATTAGACCCAATTGAAGATTAATTCTGTTGAGACTGAATGGTTATCAGATCTTTTGTATATTAATCTTCCACAGGCTGCACTCATAGTTTTCCTGAATTAATTGACTTGTACTTGTTTGAGCTTCCACAACTGCCTTAATGCTTTTGATTATTTATTGCATTTGCATTCATTGAAAAGTAAAGATATACCTACAACCTGTAAAATCAACTTAAACGGCAAGATGAACATGTTTGAAATATCTGACTAGTTGTGCACAACATTTTTAGCTGCGGGGATGATGGTCACATTCGAGGATGGAGGTGGAACGAATGCACAGATATAGAGGTGCCTATATATTTGCAAGGTAATAGTCTATAGACGTATTATCTGTAGTAGTAGTAGTGGTAGTAGTGTAGGTTTCATGACCCCGTGAGTAAGGGCTGGCTTTTCATGTGCCTTAGTTTTCTTTGGCTATTTGAACATTCTCTTTTCTTGTTGCTTTCTCATTCATTTAAAATTTTTGTTTTGACTTGTGTATCGTTTTATTTTTCAATTGTTTTAATAACTTCATTCCTTTCTTTTTATTCCAGGTAGTCATATTGAGCCTGTAATGGACCTGATGAATCCTCAATACAAGTAGGTTATCGAAATATTTTGTATTCGTTTCTTATTTTTCTTTAGCATTCTTTGGTGAATCTTCCAAGTGATTAGGTTGTCAAAAAGATATATAAAGAAATCCACCCAGAGGACATATTTTGTACGTAGTTACCAAAGAAGTCAAAGCGTAAGGGCTTATCATCAAAACCTCTAGCATTCCTTTCCTTCGACAAGTGCCATAAAAGTGCTCTAGAGGCACAACTGCCCATTACCTTAGATTTTCCTTTCAAATTCCAAGCATAAAGCTCTTCCATGAGCCAATCGTTCACCATTTCAGGGAGGCAAAAAGAAATACTCAACGCACCGGCTATGTTGTTCCATGAACAATATGCAAAATCACGATGGAGGATTAAGTGATTTAAGAGATTCCCCCTCGTTTAAACATAACCTACAACCCGAAGGTGAAAGATACCGTCTCCTAAACTTTCTTTGCAATCTATCATCAATGTTTAGGCCCCTGAACGGTGAGGACTGCAGGATGACTTCTACTTCTTAGGACTTTGATGCTTCCAAACCATGGTAGTCAGAACCATATTTGCTTTAGTAGGCCAAGAATAGGGATTTTGGAGTGCCGACTTGCCAGAATAGCCACCTGATCCCTCAAGGGACCAAAGGATTCTATCTACTCCATTCCCCAACTACACCAAATTATACTTCTTCGCAAGAGCCACTCAACTATAAAGCTCTTTATCAAAAAGACCGATTCTAAACCCAAAATTCCAAGCCTGATTATCATTGTCCCAACACTAAAAAGTCGAGCCTTCTTTTTTATTGGAAACCACAAAAAAGATCATAAAAGCTCGCCTTCAATGGAATTTGATCAACCTAGGTGTCTTCACACAATCAAATATTTTTCCCACAACTAGCAATAAACCTGCAACTTTTAGATAGATAGATATTCTATTGTCAACAGTAAATTTATGGATTTATGTTTCATGATATATATATCTATATATCTATATGTATATATATCTATATTTCTGTATATATATATAGACACACACACACACACACACACACACACAACTTTCAAGCATTGTCTTTTTGACATCTCAATTAGAACTTTAAAAAATTATGTAATCATCTATAATCTATTGACTATTAGTTCAGCAGCCATTCTTTTAAAAATGGTCAACATATAATGCAAGGATGCTTTATTCTTTTCTATAGATTTTATGACAACTTTATATTTGTCTATATCAGATTTATAAAATCAAGTTGAGGTTAGAATAGATATGTATTTTTTCCCCTTTGTGCATGTGATTATCTCTCTAATACTCTTATTCTTTTATATGTATCCATTGCTTTCTTCTAGAGGTCCTTGGGGTGCTCTTTCTCCAATCCCTGAAAATAATGCAATTGCTACCAATGCGCAGGTTAATAAAACTTTATTTCCCCCTCTTATTCTATACTTCACATTAAGATTAAAAAAAAAGTGTAGGAAGAAGAAGGAACAGATGAGGTAATATCTTATTTTATTTTACAGAGTGGATCCATTTTTTCTGCTGCTGGAGATTCTTGTGCGTATTGTTGGGATTTGGTATGTGTATTTTAAGCTGGATGGTGCAGTCAACAGTAAATTTTGCACTCAGATCTTTGTTACAGCTAAGAATTAAGTTCCTTCTAACACTTGCTTAGTTTCTGGCTTCTTGGATTTAAAATTTTCAGGAGAGCGGTAAAATTAAGATGGTGTTTAAGGGGCACTCTGACTACTTGCACTGTATAGTTGCCCGAAACACTGTCAATCAAGTACGTTTTTCCTTCTTTTGCTTGGTTATATAATAGATTTTTTATCTTGAACTTGATTTCACCTTAATGAATTGGGGGTCTATTGCTGTGTCCGCCTGTTTTCTCTTTGAATAATAGCTAGGTATGCAAGTGGTAAAGTATGACATTTTCCTATACATCAATGGAAAGCATGAAATTTTTGAGACTTACTATTAATTATTATGGCTCCATTTGGTTAAGCTTTTGTTTTTGTTTAATGTTTTGAAACATGTGATAATCATTGGCTTTCTGAACTGTACTTTTCATGTATTTCCACCTTATTATTTTCACCCCTTGAATTCCAGATCATAACTGGTTCAGAAGATGGTACAGCACGAATATGGGGTAGGGAAACTACTTCTTTCTTTATACCCACACACACACAAACACACACACACACACACACACACATATTGACCTCAAGCAGAAGGTCGTGAATCAACATTAGTCATTTTCTACATGCACTTGTGTCATGTTTATTGTTAAATGCTATTATAACAACCATAGTCCATAAATTTGTTGAGCGAGAACATAGTTTAGCACAGTGGTTAAAACTTCTCAAGGAGAACACGGGTTTGAATTCTCTTTGATTGTCTGGCATCAATCAATTTGTAGTTTCTACTTTCTAACTTGTTAAATTTAAGTCGGTACATTTTTTGGTATAAATATAGAAATTGTAAGAGCAAAAATTTGTATCTTATACGTGTCTTTAAAAAATTGTATTTTTATACATGTTTATACTATCAAACAAGATTGCAAGGCTGGAAAGTGCATTCAAGTAATCGACCCAGCGAAGGATAATAAGAAGCAGAAAGGGAACTTTTCTTGTGTTAGATGCATTGCTCTTGATGCAAGTGAAAGCTGGTTGGTAAGTATTCACTCGATGATCTGGATATTCCCTCTTTTTCTTGTATTGTCTATAATTGGTGTTTGCTTATAGATTTGAATATGGGTTTTTGCACCGTTGTTGTCTTATTTTATTGTTTGGCCTGTTTTCTATTCTTCATCATTCTTAATGAAAACATTTTTTCTTCTTGAAGGAAAATATTTTGATAATGGTTTTGTATTATAATGTTGTGTCTCCCGTTTTTTTTTTTTTTTTTTTTTTTAAAAAACTTTGTTGTTTGAATCCACATTTAGATTCCAATTATTCTACCTTTTCAGATTTCCTTCAAAAGGAACGTCCTAATGACACAGTCCAATATCCCGTCGAACGAGACCATCTATCTGCTTAGCGATTCGATCTCATTTGTCTGTTGATTCTTGCTAGAGTAAACGCCTCCATGCCGATCTTCAAACCAGAGATCTTTTCGAGCAAATACTTCATTTTCAACAACTTGAAAAGCTTTCTCTCTTTAGCAACAATATAAAAGAGATTCAGCAAATGCAAGTGGCTTATATTTATTTTGTTTCTCCAGCTAACCTCTAAACTCACCAGTTGCAAATAACTAATAGAAAAGGAAGATAACTGACCTTACCTTTGCCTCTATTTTCTTATCCTTCCGTTGGTTTTCCATTCAAGAAGTAAATGTCAACTCACAAGCTACGTGCCTTTTATAAATCAATCTTCAACTGCCAGCCCTTAGAAATTCTCCATTCACCAACACTCCCAGACTCATTTTCTTAGACTGTAATAACTCTTTACATGTGGACTTTGGATATATTGTGTACACACTAGTTACCTAGCTAACTGGTCAGAAACCAAACAAATGAAATTTTCGTTGATACACAAATTAGGGATCCCATCCTGAAAAACTGCTTGGTTCAACTTTGAGCATGGCACTTGTAATAATGTTCCAACTTTTTTTATTTAAATTTCAGTTCTATGCAAAATAGATGAAAAAACTTTTATAGATGTAAGGTTGACTGACTATCTTTTTGCTGAGAATATATCTCTTGCTGTATTGATGGGTACAATGGAGTGATATTCATCTGCTGTATTTTATTTTAGGCCTGTGCTGATGGTCGGAGTTTTTCAGTTTGGAACCTTCCGGCTTCAGATTTCATTTCAAGAACTTTGACCCGTTCTTCAATGCAGGATATGGTTTTCTGTGATAATCAAGTGAGTGATTCTCCTTCTTGAACTGATAGTTTCTTTAATTGATTGGCAGTTCGTCCCTAGCCTGCAAGTTGATGTTGTTCAGAAGTTTATCCTCAGGATTTCATCTTTCATTAGATGATTAGACACGAGAAACATATATAGACTTCCAAGGTTCTAGAAATTAGGCCAGGAGTTTGGTATAATTTAATGTAACAGATAAGTCATTTGGTATAATTTAATGTAACAGATAAGTCATTTGGTATAATTATTGTTGATATACAAGTTAAGAAATACGACAGGAGCATAGCCAGGAGTTTCTAGAAATTAGGCCGTGAATATATCAAAGTCTGTCATCTTAATAGCTCGTGTTAGATCGGATTTTCTGGCACCATTTTATGTTAATTGTTGCTTTTCCATGTGCAGATACTAGGCGTTGGAGCAGAACCATTACTAACTCGATTCGACATACATGGATCAATTCTCTCAGAAATACAATGTGCCCCTCAATCCGCTTTTTCTGTCGCTGTGCATCCATCTGGCGTATGTTCAACTTATAATTCCTTTTGTCCTTTGGTTTCCTGCCAGTCTTCTCTTTGGAACTTCTTCATTTCTCTCCATTATAGGAAGATTAGAGATTACCAATTCCTCTTAGTCAATTATTGGGTCTTGAAGCCATGGAATTTTTTTATACATATGTTTTCAAAAACTTGTTTTTGTTTAGGAAATTTGGCTAGTAATCCAAATGATTATCAAAACCTTGTTGTTCACTTTAGTTTTTATGCCTCTTATAATCTTATACCAATGAGCAACTTATTCAGTCATGCCACAATCTGTTCATATTTCATTCTTAAATCTTAGTGAATCACGCCATAACTGTATGTCGGTTCACATATCAGCTTATCGGATGCATATCTTCCTTAGGCTTTCATCCAATCTTTAAATAGAACTCCTGTGGGGATAAATTGAATTCAAGCAACTTATAAAATGATGCATATAAAATGATATTGTGCTTCATTTCTCTATGCTTCTCTCACTCTTGGATGGTTTATTTGTCCATTCAGGTCGCAGCAGTTGGAGGCTATGGTGGTCTCGTGGACGTTATCTCACAGTTTGGAAGCCATTTATGTACATTCTGCTGTCAATACAGATGAATCTATATATATATTGCGTTGCTTCACCGCAGGAGTCGAGGATGTGTGGAAAATTTGGAGGTGCCTGTATTTGCTTCATGATTTCCCTGTCAAGGGGCTGCAATCCAGAAACTTTCTTCTTGTGGGATGTAGGTAATTAATCTCTAACTTCCATTATGAAGTTCTTGTCCTTAGTTTTTCTTCAAGAAAGATGCACTGTTAGCCGTTCATCAGTTTTGATATTTTTAGATTTGACAAAAATATTTGTACTCTTTGATTTGTTTTGTAACG

mRNA sequence

AAGCCAATGCATTCATTGCCTTCACGATCCTGGCAGCCAATTGCTTCGGTAAGTTCCTCCGGCGAGCCGTCGAAGGGCGTCTTCTGATTGTCTGACGCAATTTTTAGCTCTAACGCCGCTGCAACAGAGTTCATAGCTTCGCCATTGTCGTTTTAAGCTAACATTTGAGAGGCTGGAAAAGGAGCCATAGCAAGCGGTCGTAAAATGTTAGGGGACGCGACGAATTGGGACGAGGATGCCTACAGAGAGAGTCTATACAAAGAGAGAGAGGTACAAACTCGGACGGTGTTCAGAACTGCGTGGGCGCCGTCTTTAAGTGGTTGCCCTGAGTCCATCGTGGTCGCCTCCAGTGATGGATCCATTGCCTCTTATTCTATCGCTTCCTGCATCTCTAAGCTGCATTCTGGTTATGGCAATACTAAAAGGCAAGTACATTTTATCTTGGTCTCAATTTATTTTAAAATTTGGGGCTGCAAACTCGTACTTATTGTTTACGTTGTGCCTTACTCTAGTTTGCTGGCAGCAGAGCCTCATTGCTTTCTACAAGGGCACGATGGACCCACATATGATGTTAAATTTTTTGATGCTGGCGACAATACTTTATTACTGAGCTGCGGGGATGATGGTCACATTCGAGGATGGAGGTGGAACGAATGCACAGATATAGAGGTGCCTATATATTTGCAAGGTAGTCATATTGAGCCTGTAATGGACCTGATGAATCCTCAATACAAAGGTCCTTGGGGTGCTCTTTCTCCAATCCCTGAAAATAATGCAATTGCTACCAATGCGCAGAGTGGATCCATTTTTTCTGCTGCTGGAGATTCTTGTGCGTATTGTTGGGATTTGGAGAGCGGTAAAATTAAGATGGTGTTTAAGGGGCACTCTGACTACTTGCACTGTATAGTTGCCCGAAACACTGTCAATCAAATCATAACTGGTTCAGAAGATGGTACAGCACGAATATGGGATTGCAAGGCTGGAAAGTGCATTCAAGTAATCGACCCAGCGAAGGATAATAAGAAGCAGAAAGGGAACTTTTCTTGTGTTAGATGCATTGCTCTTGATGCAAGTGAAAGCTGGTTGGCCTGTGCTGATGGTCGGAGTTTTTCAGTTTGGAACCTTCCGGCTTCAGATTTCATTTCAAGAACTTTGACCCGTTCTTCAATGCAGGATATGGTTTTCTGTGATAATCAAATACTAGGCGTTGGAGCAGAACCATTACTAACTCGATTCGACATACATGGATCAATTCTCTCAGAAATACAATGTGCCCCTCAATCCGCTTTTTCTGTCGCTGTGCATCCATCTGGCGTCGCAGCAGTTGGAGGCTATGGTGGTCTCGTGGACGTTATCTCACAGTTTGGAAGCCATTTATGTACATTCTGCTGTCAATACAGATGAATCTATATATATATTGCGTTGCTTCACCGCAGGAGTCGAGGATGTGTGGAAAATTTGGAGGTGCCTGTATTTGCTTCATGATTTCCCTGTCAAGGGGCTGCAATCCAGAAACTTTCTTCTTGTGGGATGTAGGTAATTAATCTCTAACTTCCATTATGAAGTTCTTGTCCTTAGTTTTTCTTCAAGAAAGATGCACTGTTAGCCGTTCATCAGTTTTGATATTTTTAGATTTGACAAAAATATTTGTACTCTTTGATTTGTTTTGTAACG

Coding sequence (CDS)

ATGTTAGGGGACGCGACGAATTGGGACGAGGATGCCTACAGAGAGAGTCTATACAAAGAGAGAGAGGTACAAACTCGGACGGTGTTCAGAACTGCGTGGGCGCCGTCTTTAAGTGGTTGCCCTGAGTCCATCGTGGTCGCCTCCAGTGATGGATCCATTGCCTCTTATTCTATCGCTTCCTGCATCTCTAAGCTGCATTCTGGTTATGGCAATACTAAAAGGCAAGTACATTTTATCTTGGTCTCAATTTATTTTAAAATTTGGGGCTGCAAACTCGTACTTATTGTTTACGTTGTGCCTTACTCTAGTTTGCTGGCAGCAGAGCCTCATTGCTTTCTACAAGGGCACGATGGACCCACATATGATGTTAAATTTTTTGATGCTGGCGACAATACTTTATTACTGAGCTGCGGGGATGATGGTCACATTCGAGGATGGAGGTGGAACGAATGCACAGATATAGAGGTGCCTATATATTTGCAAGGTAGTCATATTGAGCCTGTAATGGACCTGATGAATCCTCAATACAAAGGTCCTTGGGGTGCTCTTTCTCCAATCCCTGAAAATAATGCAATTGCTACCAATGCGCAGAGTGGATCCATTTTTTCTGCTGCTGGAGATTCTTGTGCGTATTGTTGGGATTTGGAGAGCGGTAAAATTAAGATGGTGTTTAAGGGGCACTCTGACTACTTGCACTGTATAGTTGCCCGAAACACTGTCAATCAAATCATAACTGGTTCAGAAGATGGTACAGCACGAATATGGGATTGCAAGGCTGGAAAGTGCATTCAAGTAATCGACCCAGCGAAGGATAATAAGAAGCAGAAAGGGAACTTTTCTTGTGTTAGATGCATTGCTCTTGATGCAAGTGAAAGCTGGTTGGCCTGTGCTGATGGTCGGAGTTTTTCAGTTTGGAACCTTCCGGCTTCAGATTTCATTTCAAGAACTTTGACCCGTTCTTCAATGCAGGATATGGTTTTCTGTGATAATCAAATACTAGGCGTTGGAGCAGAACCATTACTAACTCGATTCGACATACATGGATCAATTCTCTCAGAAATACAATGTGCCCCTCAATCCGCTTTTTCTGTCGCTGTGCATCCATCTGGCGTCGCAGCAGTTGGAGGCTATGGTGGTCTCGTGGACGTTATCTCACAGTTTGGAAGCCATTTATGTACATTCTGCTGTCAATACAGATGA

Protein sequence

MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIASCISKLHSGYGNTKRQVHFILVSIYFKIWGCKLVLIVYVVPYSSLLAAEPHCFLQGHDGPTYDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQYKGPWGALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKAGKCIQVIDPAKDNKKQKGNFSCVRCIALDASESWLACADGRSFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQSAFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR

Homology

[Close]

BLAST of Carg21951 vs. NCBI nr
Match: KAG7021946.1 (THO complex subunit 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 837.8 bits (2163), Expect = 3.9e-239
Identity = 399/399 (100.00%), Postives = 399/399 (100.00%), Query Frame = 0


Query: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60
           MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS
Sbjct: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60

Query: 61  CISKLHSGYGNTKRQVHFILVSIYFKIWGCKLVLIVYVVPYSSLLAAEPHCFLQGHDGPT 120
           CISKLHSGYGNTKRQVHFILVSIYFKIWGCKLVLIVYVVPYSSLLAAEPHCFLQGHDGPT
Sbjct: 61  CISKLHSGYGNTKRQVHFILVSIYFKIWGCKLVLIVYVVPYSSLLAAEPHCFLQGHDGPT 120

Query: 121 YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQYKGPW 180
           YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQYKGPW
Sbjct: 121 YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQYKGPW 180

Query: 181 GALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV 240
           GALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV
Sbjct: 181 GALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV 240

Query: 241 NQIITGSEDGTARIWDCKAGKCIQVIDPAKDNKKQKGNFSCVRCIALDASESWLACADGR 300
           NQIITGSEDGTARIWDCKAGKCIQVIDPAKDNKKQKGNFSCVRCIALDASESWLACADGR
Sbjct: 241 NQIITGSEDGTARIWDCKAGKCIQVIDPAKDNKKQKGNFSCVRCIALDASESWLACADGR 300

Query: 301 SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS 360
           SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS
Sbjct: 301 SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS 360

Query: 361 AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 400
           AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR
Sbjct: 361 AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 399

[Close]

BLAST of Carg21951 vs. NCBI nr
Match: KAG6588052.1 (THO complex subunit 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 833.2 bits (2151), Expect = 9.6e-238
Identity = 397/399 (99.50%), Postives = 397/399 (99.50%), Query Frame = 0


Query: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60
           MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS
Sbjct: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60

Query: 61  CISKLHSGYGNTKRQVHFILVSIYFKIWGCKLVLIVYVVPYSSLLAAEPHCFLQGHDGPT 120
           CISKLHSGYGNTKRQVHFILVSIY KIWGCKLVLIVYVVPYSSLLAAEPHCFLQGHDGPT
Sbjct: 61  CISKLHSGYGNTKRQVHFILVSIYLKIWGCKLVLIVYVVPYSSLLAAEPHCFLQGHDGPT 120

Query: 121 YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQYKGPW 180
           YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQYKGPW
Sbjct: 121 YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQYKGPW 180

Query: 181 GALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV 240
           GALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLES KIKMVFKGHSDYLHCIVARNTV
Sbjct: 181 GALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESSKIKMVFKGHSDYLHCIVARNTV 240

Query: 241 NQIITGSEDGTARIWDCKAGKCIQVIDPAKDNKKQKGNFSCVRCIALDASESWLACADGR 300
           NQIITGSEDGTARIWDCKAGKCIQVIDPAKDNKKQKGNFSCVRCIALDASESWLACADGR
Sbjct: 241 NQIITGSEDGTARIWDCKAGKCIQVIDPAKDNKKQKGNFSCVRCIALDASESWLACADGR 300

Query: 301 SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS 360
           SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS
Sbjct: 301 SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS 360

Query: 361 AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 400
           AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR
Sbjct: 361 AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 399

[Close]

BLAST of Carg21951 vs. NCBI nr
Match: XP_022934010.1 (THO complex subunit 6 [Cucurbita moschata])

HSP 1 Score: 762.7 bits (1968), Expect = 1.6e-216
Identity = 367/399 (91.98%), Postives = 369/399 (92.48%), Query Frame = 0


Query: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60
           MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS
Sbjct: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60

Query: 61  CISKLHSGYGNTKRQVHFILVSIYFKIWGCKLVLIVYVVPYSSLLAAEPHCFLQGHDGPT 120
           CISKLHSGYGNTK                             SLLAAEPHCFLQGHDGPT
Sbjct: 61  CISKLHSGYGNTK-----------------------------SLLAAEPHCFLQGHDGPT 120

Query: 121 YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQYKGPW 180
           YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQYKGPW
Sbjct: 121 YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQYKGPW 180

Query: 181 GALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV 240
           GALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV
Sbjct: 181 GALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV 240

Query: 241 NQIITGSEDGTARIWDCKAGKCIQVIDPAKDNKKQKGNFSCVRCIALDASESWLACADGR 300
           NQIITGSEDGTARIWDCK GKCIQ++DPAKDNKKQKGNFSCVRCIALDASESWLACADGR
Sbjct: 241 NQIITGSEDGTARIWDCKTGKCIQLLDPAKDNKKQKGNFSCVRCIALDASESWLACADGR 300

Query: 301 SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS 360
           SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS
Sbjct: 301 SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS 360

Query: 361 AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 400
           AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR
Sbjct: 361 AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 370

[Close]

BLAST of Carg21951 vs. NCBI nr
Match: XP_023531243.1 (THO complex subunit 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 758.1 bits (1956), Expect = 3.9e-215
Identity = 365/399 (91.48%), Postives = 367/399 (91.98%), Query Frame = 0


Query: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60
           MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS
Sbjct: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60

Query: 61  CISKLHSGYGNTKRQVHFILVSIYFKIWGCKLVLIVYVVPYSSLLAAEPHCFLQGHDGPT 120
           CISKLHSGYGNTK                             SLLAAEPHCFLQGHDGP 
Sbjct: 61  CISKLHSGYGNTK-----------------------------SLLAAEPHCFLQGHDGPA 120

Query: 121 YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQYKGPW 180
           YDVKFFDAGDNTLLLSCGDDGHIRGW+W ECTDIEVPIYLQGSHIEPVMDLMNPQYKGPW
Sbjct: 121 YDVKFFDAGDNTLLLSCGDDGHIRGWKWKECTDIEVPIYLQGSHIEPVMDLMNPQYKGPW 180

Query: 181 GALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV 240
           GALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV
Sbjct: 181 GALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV 240

Query: 241 NQIITGSEDGTARIWDCKAGKCIQVIDPAKDNKKQKGNFSCVRCIALDASESWLACADGR 300
           NQIITGSEDGTARIWDCK GKCIQ+IDPAKDNKKQKGNFSCVRCIALDASESWLACADGR
Sbjct: 241 NQIITGSEDGTARIWDCKTGKCIQLIDPAKDNKKQKGNFSCVRCIALDASESWLACADGR 300

Query: 301 SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS 360
           SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS
Sbjct: 301 SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS 360

Query: 361 AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 400
           AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR
Sbjct: 361 AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 370

[Close]

BLAST of Carg21951 vs. NCBI nr
Match: XP_022967656.1 (THO complex subunit 6 [Cucurbita maxima])

HSP 1 Score: 751.9 bits (1940), Expect = 2.8e-213
Identity = 364/399 (91.23%), Postives = 365/399 (91.48%), Query Frame = 0


Query: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60
           MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS
Sbjct: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60

Query: 61  CISKLHSGYGNTKRQVHFILVSIYFKIWGCKLVLIVYVVPYSSLLAAEPHCFLQGHDGPT 120
           CISKLHSGYGNTK                             SLLAAEPHCFLQGHDGP 
Sbjct: 61  CISKLHSGYGNTK-----------------------------SLLAAEPHCFLQGHDGPA 120

Query: 121 YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQYKGPW 180
           YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMN QYKGPW
Sbjct: 121 YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNLQYKGPW 180

Query: 181 GALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV 240
           GALSPIPENNAIATN QSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV
Sbjct: 181 GALSPIPENNAIATNTQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV 240

Query: 241 NQIITGSEDGTARIWDCKAGKCIQVIDPAKDNKKQKGNFSCVRCIALDASESWLACADGR 300
           NQIITGSEDGTARIWDCK GKCIQ+IDPAKDNKKQKGNFSCVRCIALDASESWLACADGR
Sbjct: 241 NQIITGSEDGTARIWDCKTGKCIQLIDPAKDNKKQKGNFSCVRCIALDASESWLACADGR 300

Query: 301 SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS 360
           SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS
Sbjct: 301 SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS 360

Query: 361 AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 400
           AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTF CQYR
Sbjct: 361 AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFFCQYR 370

[Close]

BLAST of Carg21951 vs. ExPASy Swiss-Prot
Match: Q8L4M1 (THO complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=THO6 PE=1 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 1.4e-127
Identity = 214/395 (54.18%), Postives = 292/395 (73.92%), Query Frame = 0


Query: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWA-PSLSGCPESIVVASSDGSIASYSIA 60
           M GDATNW+ED YRES+ KERE++TRTVFRTAWA P+    P++ VVASSDG++A +S+ 
Sbjct: 1   MYGDATNWNEDEYRESILKEREIETRTVFRTAWAPPARISNPDAFVVASSDGTLAFHSLN 60

Query: 61  SCISKLHSGYGNTKRQVHFILVSIYFKIWGCKLVLIVYVVPYSSLLAAEPHCFLQGHDGP 120
           S +S+  + +G +K Q                            ++ AEP   ++ H+GP
Sbjct: 61  SLVSQ-SASFGYSKGQ---------------------------DVMVAEPERVVRAHEGP 120

Query: 121 TYDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQYKGP 180
            YDVKF+   ++ LLLSCGDDG +RGW+W E  + +V ++L+ +H++P+++L+NPQ+KGP
Sbjct: 121 AYDVKFYGEDEDALLLSCGDDGRVRGWKWREFAESDVSLHLKENHLKPLLELINPQHKGP 180

Query: 181 WGALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNT 240
           WGALSP+PE NA++ + QSGS+F+AAGDSCAYCWD+ESGKIKM FKGHSDYLH +V+R++
Sbjct: 181 WGALSPMPEINAMSVDPQSGSVFTAAGDSCAYCWDVESGKIKMTFKGHSDYLHTVVSRSS 240

Query: 241 VNQIITGSEDGTARIWDCKAGKCIQVIDPAKDNKKQKGNFSCVRCIALDASESWLACADG 300
            +QI+TGSEDGTARIWDCK GKC++VI     +KK +     V  +ALD SESWL C  G
Sbjct: 241 ASQILTGSEDGTARIWDCKTGKCVKVI--GSQDKKSRLR---VSSMALDGSESWLVCGQG 300

Query: 301 RSFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQ 360
           ++ ++WNLPAS+ +      + +QD++F + QIL VGAEPLL RFD++G++LS+I CAP 
Sbjct: 301 KNLALWNLPASECVQTIPIPAHVQDVMFDEKQILTVGAEPLLRRFDLNGALLSQIHCAPC 360

Query: 361 SAFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTF 395
           S FS+++HP+GV AVGGYGG+VDVISQFGSHLCTF
Sbjct: 361 SVFSISLHPAGVVAVGGYGGIVDVISQFGSHLCTF 362

[Close]

BLAST of Carg21951 vs. ExPASy Swiss-Prot
Match: Q5XJS5 (THO complex subunit 6 homolog OS=Danio rerio OX=7955 GN=thoc6 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.2e-27
Identity = 82/301 (27.24%), Postives = 135/301 (44.85%), Query Frame = 0


Query: 100 PYSSLLAAEPHCFLQGHDGPTYDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIY 159
           P +S  + +P      HDGP + +        + LLS G +G I  W W E         
Sbjct: 43  PDASERSQKPILNFTAHDGPVFSL----LSTESHLLSAG-NGEISAWSWAE--------- 102

Query: 160 LQGSHIEPVMDLMNPQYKGPW------GALSPIPENNAIATNAQSGSIFSAAGDSCAYCW 219
                      L+    K  W           IPE NA+  N +  ++    GD+  +  
Sbjct: 103 -----------LIKKSTKAAWTRKPNYETSLEIPEINAMIINPKDNNLIVGGGDNNIHIM 162

Query: 220 DLESGKIKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKAGK---CIQVIDPAK 279
           D+E+G  K V KGH+DY+HC+  +    +I++G EDG  RIWD +  +   CI+V    +
Sbjct: 163 DMETGTFKSVLKGHTDYIHCLSFKEREGEILSGGEDGAVRIWDSRTNRPVHCIEVFKYEE 222

Query: 280 DNKKQKGNFSCVRCIALDASESWLACADGRSFSVWNLPASDFISRTLTRSSMQDMVFCDN 339
             + Q G +  + C+A D+   W+ C  G S S+W+L +    S        ++ V   +
Sbjct: 223 CARPQFGKW--ISCLATDS--DWMLCGGGPSLSLWHLRSMSPTSVFPLSGCQREAVSYQD 282

Query: 340 QILGVGAEPLLTRFDIHGSILSEIQCAPQSAFSVAVHPSG----VAAVGGYGGLVDVISQ 388
            I+ VG  P ++     G++ ++I C+P S  ++A++       V  VGG    +DV + 
Sbjct: 283 LIMSVGEGPYVSHCLHGGTVKAQIPCSPSSLNTLALNLKNTEHRVMTVGGSSHQIDVFTN 314

[Close]

BLAST of Carg21951 vs. ExPASy Swiss-Prot
Match: Q86W42 (THO complex subunit 6 homolog OS=Homo sapiens OX=9606 GN=THOC6 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.1e-25
Identity = 74/288 (25.69%), Postives = 129/288 (44.79%), Query Frame = 0


Query: 108 EPHCFLQGHDGPTYDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEP 167
           +P    Q HDGP Y +   D      LLS G DG ++ W W E               + 
Sbjct: 67  KPVVTFQAHDGPVYSMVSTDRH----LLSAG-DGEVKAWLWAEMLK------------KG 126

Query: 168 VMDLMNPQYKGPWGALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGH 227
             +L   Q   P+     +PE NA+    +  S+  A GD   +  DLE+G    V +GH
Sbjct: 127 CKELWRRQ--PPYRTSLEVPEINALLLVPKENSLILAGGDCQLHTMDLETGTFTRVLRGH 186

Query: 228 SDYLHCIVARNTVNQIITGSEDGTARIWDCKAGKCIQVIDPAKDNK-KQKGNFSCVRCIA 287
           +DY+HC+  R    ++++G EDG  R+WD +  K +Q I+  K  +  +  N   + C+A
Sbjct: 187 TDYIHCLALRERSPEVLSGGEDGAVRLWDLRTAKEVQTIEVYKHEECSRPHNGRWIGCLA 246

Query: 288 LDASESWLACADGRSFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDI 347
            D+   W+ C  G + ++W+L +S   +    R+  + + F  + IL  G    + ++ +
Sbjct: 247 TDS--DWMVCGGGPALTLWHLRSSTPTTIFPIRAPQKHVTFYQDLILSAGQGRCVNQWQL 306

Query: 348 HGSILSEIQCAPQSAFSVAVHPSGVA------AVGGYGGLVDVISQFG 389
            G + +++  +     S++++    A         G    VDV +  G
Sbjct: 307 SGELKAQVPGSSPGLLSLSLNQQPAAPECKVLTAAGNSCRVDVFTNLG 333

[Close]

BLAST of Carg21951 vs. ExPASy Swiss-Prot
Match: Q5U4D9 (THO complex subunit 6 homolog OS=Mus musculus OX=10090 GN=Thoc6 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.6e-25
Identity = 75/288 (26.04%), Postives = 129/288 (44.79%), Query Frame = 0


Query: 108 EPHCFLQGHDGPTYDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEP 167
           +P      HDGP Y +   D      LLS G DG ++GW W E       I  +G     
Sbjct: 67  KPVVVFHAHDGPVYSMVSTDRH----LLSAG-DGEVKGWLWAE-------ILKKG----- 126

Query: 168 VMDLMNPQYKGPWGALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGH 227
             +L   Q   P+     +PE NA+    +  S+  A GD   +  DLE+G      +GH
Sbjct: 127 CKELWRRQ--PPYRTSLEVPEINALLLVPKENSLILAGGDCQLHSMDLETGAFTRALRGH 186

Query: 228 SDYLHCIVARNTVNQIITGSEDGTARIWDCKAGKCIQVIDPAKDNK-KQKGNFSCVRCIA 287
           +DY+HC+  R    ++++G EDG  R+WD +  K +Q I+  K  +  +  N   + C+A
Sbjct: 187 TDYIHCLALRERSPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLA 246

Query: 288 LDASESWLACADGRSFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDI 347
            D+   W+ C  G + ++W+L +S   +    R+  + + F  + IL  G    +  + +
Sbjct: 247 TDS--DWMVCGGGPALTLWHLRSSTPTTVFPIRAPQKHVTFYQDLILSAGQGCCVNHWQL 306

Query: 348 HGSILSEIQCAPQSAFSVAVHPSGVA------AVGGYGGLVDVISQFG 389
            G + +++  +     S++++    A         G    VDV +  G
Sbjct: 307 SGELKAQVPGSSPGLLSLSLNQQPAAPECKVLTASGNSCRVDVFTNLG 333

[Close]

BLAST of Carg21951 vs. ExPASy Swiss-Prot
Match: Q6AY87 (THO complex subunit 6 homolog OS=Rattus norvegicus OX=10116 GN=Thoc6 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.6e-25
Identity = 75/288 (26.04%), Postives = 129/288 (44.79%), Query Frame = 0


Query: 108 EPHCFLQGHDGPTYDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEP 167
           +P      HDGP Y +   D      LLS G DG ++GW W E       I  +G     
Sbjct: 67  KPMVTFHAHDGPVYSMVSTDRH----LLSAG-DGEVKGWLWAE-------ILKKG----- 126

Query: 168 VMDLMNPQYKGPWGALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGH 227
             +L   Q   P+     +PE NA+    +  S+  A GD   +  DLE+G      +GH
Sbjct: 127 CKELWRRQ--PPYRTSLEVPEINALLLVPKENSLILAGGDCQLHTMDLETGTFTRALRGH 186

Query: 228 SDYLHCIVARNTVNQIITGSEDGTARIWDCKAGKCIQVIDPAKDNK-KQKGNFSCVRCIA 287
           +DY+HC+  R    ++++G EDG  R+WD +  K +Q I+  K  +  +  N   + C+A
Sbjct: 187 TDYIHCLALRERSPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLA 246

Query: 288 LDASESWLACADGRSFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDI 347
            D+   W+ C  G + ++W+L +S   +    R+  + + F  + IL  G    +  + +
Sbjct: 247 TDS--DWMVCGGGPALTLWHLRSSTPTTVFPIRAPQKHVTFYQDLILSAGQGCCVNHWQL 306

Query: 348 HGSILSEIQCAPQSAFSVAVHPSGVA------AVGGYGGLVDVISQFG 389
            G + +++  +     S++++    A         G    VDV +  G
Sbjct: 307 SGELKAQVPGSSPGLLSLSLNQQPAAPECKVLTASGNSCRVDVFTNLG 333

[Close]

BLAST of Carg21951 vs. ExPASy TrEMBL
Match: A0A6J1F6F8 (THO complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111441243 PE=3 SV=1)

HSP 1 Score: 762.7 bits (1968), Expect = 7.7e-217
Identity = 367/399 (91.98%), Postives = 369/399 (92.48%), Query Frame = 0


Query: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60
           MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS
Sbjct: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60

Query: 61  CISKLHSGYGNTKRQVHFILVSIYFKIWGCKLVLIVYVVPYSSLLAAEPHCFLQGHDGPT 120
           CISKLHSGYGNTK                             SLLAAEPHCFLQGHDGPT
Sbjct: 61  CISKLHSGYGNTK-----------------------------SLLAAEPHCFLQGHDGPT 120

Query: 121 YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQYKGPW 180
           YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQYKGPW
Sbjct: 121 YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQYKGPW 180

Query: 181 GALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV 240
           GALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV
Sbjct: 181 GALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV 240

Query: 241 NQIITGSEDGTARIWDCKAGKCIQVIDPAKDNKKQKGNFSCVRCIALDASESWLACADGR 300
           NQIITGSEDGTARIWDCK GKCIQ++DPAKDNKKQKGNFSCVRCIALDASESWLACADGR
Sbjct: 241 NQIITGSEDGTARIWDCKTGKCIQLLDPAKDNKKQKGNFSCVRCIALDASESWLACADGR 300

Query: 301 SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS 360
           SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS
Sbjct: 301 SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS 360

Query: 361 AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 400
           AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR
Sbjct: 361 AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 370

[Close]

BLAST of Carg21951 vs. ExPASy TrEMBL
Match: A0A6J1HSS1 (THO complex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111467097 PE=3 SV=1)

HSP 1 Score: 751.9 bits (1940), Expect = 1.4e-213
Identity = 364/399 (91.23%), Postives = 365/399 (91.48%), Query Frame = 0


Query: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60
           MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS
Sbjct: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60

Query: 61  CISKLHSGYGNTKRQVHFILVSIYFKIWGCKLVLIVYVVPYSSLLAAEPHCFLQGHDGPT 120
           CISKLHSGYGNTK                             SLLAAEPHCFLQGHDGP 
Sbjct: 61  CISKLHSGYGNTK-----------------------------SLLAAEPHCFLQGHDGPA 120

Query: 121 YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQYKGPW 180
           YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMN QYKGPW
Sbjct: 121 YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNLQYKGPW 180

Query: 181 GALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV 240
           GALSPIPENNAIATN QSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV
Sbjct: 181 GALSPIPENNAIATNTQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV 240

Query: 241 NQIITGSEDGTARIWDCKAGKCIQVIDPAKDNKKQKGNFSCVRCIALDASESWLACADGR 300
           NQIITGSEDGTARIWDCK GKCIQ+IDPAKDNKKQKGNFSCVRCIALDASESWLACADGR
Sbjct: 241 NQIITGSEDGTARIWDCKTGKCIQLIDPAKDNKKQKGNFSCVRCIALDASESWLACADGR 300

Query: 301 SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS 360
           SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS
Sbjct: 301 SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS 360

Query: 361 AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 400
           AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTF CQYR
Sbjct: 361 AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFFCQYR 370

[Close]

BLAST of Carg21951 vs. ExPASy TrEMBL
Match: A0A5A7UQQ6 (THO complex subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001940 PE=3 SV=1)

HSP 1 Score: 706.4 bits (1822), Expect = 6.6e-200
Identity = 336/399 (84.21%), Postives = 358/399 (89.72%), Query Frame = 0


Query: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60
           ML DATNWDE AYRES+YKERE+QTRTVFRTAWAPSL+GCPE+IV ASSDGS+ASYSIAS
Sbjct: 1   MLADATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60

Query: 61  CISKLHSGYGNTKRQVHFILVSIYFKIWGCKLVLIVYVVPYSSLLAAEPHCFLQGHDGPT 120
           CISKL  GYGNTK                             SLLAAEPHCFLQGHDGPT
Sbjct: 61  CISKLQFGYGNTK-----------------------------SLLAAEPHCFLQGHDGPT 120

Query: 121 YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQYKGPW 180
           YDVKF+D GDNTLLLSCGDDGHIRGWRW +CTDIEVPIYLQGSHIEPVMDLMNPQ+KGPW
Sbjct: 121 YDVKFYDNGDNTLLLSCGDDGHIRGWRWRDCTDIEVPIYLQGSHIEPVMDLMNPQFKGPW 180

Query: 181 GALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV 240
           GALSPIPENNAIAT+AQSGSIFSAAGDSCAYCWDLESGK+KMVFKGHSDYLHCIVARNTV
Sbjct: 181 GALSPIPENNAIATDAQSGSIFSAAGDSCAYCWDLESGKVKMVFKGHSDYLHCIVARNTV 240

Query: 241 NQIITGSEDGTARIWDCKAGKCIQVIDPAKDNKKQKGNFSCVRCIALDASESWLACADGR 300
           NQIITGSEDGTARIWDCK+GKCIQ+IDPAKD KK KG+FS VRCIALDASESWLACADGR
Sbjct: 241 NQIITGSEDGTARIWDCKSGKCIQLIDPAKD-KKLKGHFSFVRCIALDASESWLACADGR 300

Query: 301 SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS 360
           S SVWNLP+S+FIS+TLTRSS+QDMVFCDNQILGVGAEP LTRFDI+GS+LS+IQCAPQS
Sbjct: 301 SLSVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQIQCAPQS 360

Query: 361 AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 400
           AFSVA+HPSGVAAVGGYGGL+DVISQFGSHLCTFCCQYR
Sbjct: 361 AFSVALHPSGVAAVGGYGGLIDVISQFGSHLCTFCCQYR 369

[Close]

BLAST of Carg21951 vs. ExPASy TrEMBL
Match: A0A1S3BQ99 (THO complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103492340 PE=3 SV=1)

HSP 1 Score: 706.4 bits (1822), Expect = 6.6e-200
Identity = 336/399 (84.21%), Postives = 358/399 (89.72%), Query Frame = 0


Query: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60
           ML DATNWDE AYRES+YKERE+QTRTVFRTAWAPSL+GCPE+IV ASSDGS+ASYSIAS
Sbjct: 1   MLADATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60

Query: 61  CISKLHSGYGNTKRQVHFILVSIYFKIWGCKLVLIVYVVPYSSLLAAEPHCFLQGHDGPT 120
           CISKL  GYGNTK                             SLLAAEPHCFLQGHDGPT
Sbjct: 61  CISKLQFGYGNTK-----------------------------SLLAAEPHCFLQGHDGPT 120

Query: 121 YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQYKGPW 180
           YDVKF+D GDNTLLLSCGDDGHIRGWRW +CTDIEVPIYLQGSHIEPVMDLMNPQ+KGPW
Sbjct: 121 YDVKFYDNGDNTLLLSCGDDGHIRGWRWRDCTDIEVPIYLQGSHIEPVMDLMNPQFKGPW 180

Query: 181 GALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV 240
           GALSPIPENNAIAT+AQSGSIFSAAGDSCAYCWDLESGK+KMVFKGHSDYLHCIVARNTV
Sbjct: 181 GALSPIPENNAIATDAQSGSIFSAAGDSCAYCWDLESGKVKMVFKGHSDYLHCIVARNTV 240

Query: 241 NQIITGSEDGTARIWDCKAGKCIQVIDPAKDNKKQKGNFSCVRCIALDASESWLACADGR 300
           NQIITGSEDGTARIWDCK+GKCIQ+IDPAKD KK KG+FS VRCIALDASESWLACADGR
Sbjct: 241 NQIITGSEDGTARIWDCKSGKCIQLIDPAKD-KKLKGHFSFVRCIALDASESWLACADGR 300

Query: 301 SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS 360
           S SVWNLP+S+FIS+TLTRSS+QDMVFCDNQILGVGAEP LTRFDI+GS+LS+IQCAPQS
Sbjct: 301 SLSVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQIQCAPQS 360

Query: 361 AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 400
           AFSVA+HPSGVAAVGGYGGL+DVISQFGSHLCTFCCQYR
Sbjct: 361 AFSVALHPSGVAAVGGYGGLIDVISQFGSHLCTFCCQYR 369

[Close]

BLAST of Carg21951 vs. ExPASy TrEMBL
Match: A0A0A0LWJ2 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G589670 PE=3 SV=1)

HSP 1 Score: 699.9 bits (1805), Expect = 6.1e-198
Identity = 334/399 (83.71%), Postives = 358/399 (89.72%), Query Frame = 0


Query: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60
           MLGDATNWDE AYRES+YKERE+QTRTVFRTAWAPSL+GCPE+IV ASSDGS+ASYSIAS
Sbjct: 1   MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60

Query: 61  CISKLHSGYGNTKRQVHFILVSIYFKIWGCKLVLIVYVVPYSSLLAAEPHCFLQGHDGPT 120
           CISKL  GYGNTK                             SLLAAEP+CFLQGHDGPT
Sbjct: 61  CISKLQFGYGNTK-----------------------------SLLAAEPNCFLQGHDGPT 120

Query: 121 YDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQYKGPW 180
           YDVKF+D GDNTLLLSCGDDGHIRGWRW +CTDI+VPI LQGSHIEPVMDL+NPQ+KGPW
Sbjct: 121 YDVKFYDNGDNTLLLSCGDDGHIRGWRWRDCTDIKVPISLQGSHIEPVMDLINPQFKGPW 180

Query: 181 GALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTV 240
           GALSPIPENNAIAT+AQSGSIFSAAGDSCAYCWDLESGK+KMVFKGHSDYLHCIVARNTV
Sbjct: 181 GALSPIPENNAIATDAQSGSIFSAAGDSCAYCWDLESGKVKMVFKGHSDYLHCIVARNTV 240

Query: 241 NQIITGSEDGTARIWDCKAGKCIQVIDPAKDNKKQKGNFSCVRCIALDASESWLACADGR 300
           NQIITGSEDGTARIWDCK+GKCIQ+IDPAKD KK KG+FS VRCIALDASESWLACADGR
Sbjct: 241 NQIITGSEDGTARIWDCKSGKCIQLIDPAKD-KKLKGHFSFVRCIALDASESWLACADGR 300

Query: 301 SFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQS 360
           S SVWNLP+S+FIS+TLTRSS+QDMVFCDNQILGVGAEP LTRFDI+GS+LS+IQCAPQS
Sbjct: 301 SISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQIQCAPQS 360

Query: 361 AFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 400
           AFSVA+HPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR
Sbjct: 361 AFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 369

[Close]

BLAST of Carg21951 vs. TAIR 10
Match: AT2G19430.1 (DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 )

HSP 1 Score: 457.6 bits (1176), Expect = 1.0e-128
Identity = 214/395 (54.18%), Postives = 292/395 (73.92%), Query Frame = 0


Query: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWA-PSLSGCPESIVVASSDGSIASYSIA 60
           M GDATNW+ED YRES+ KERE++TRTVFRTAWA P+    P++ VVASSDG++A +S+ 
Sbjct: 1   MYGDATNWNEDEYRESILKEREIETRTVFRTAWAPPARISNPDAFVVASSDGTLAFHSLN 60

Query: 61  SCISKLHSGYGNTKRQVHFILVSIYFKIWGCKLVLIVYVVPYSSLLAAEPHCFLQGHDGP 120
           S +S+  + +G +K Q                            ++ AEP   ++ H+GP
Sbjct: 61  SLVSQ-SASFGYSKGQ---------------------------DVMVAEPERVVRAHEGP 120

Query: 121 TYDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQYKGP 180
            YDVKF+   ++ LLLSCGDDG +RGW+W E  + +V ++L+ +H++P+++L+NPQ+KGP
Sbjct: 121 AYDVKFYGEDEDALLLSCGDDGRVRGWKWREFAESDVSLHLKENHLKPLLELINPQHKGP 180

Query: 181 WGALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNT 240
           WGALSP+PE NA++ + QSGS+F+AAGDSCAYCWD+ESGKIKM FKGHSDYLH +V+R++
Sbjct: 181 WGALSPMPEINAMSVDPQSGSVFTAAGDSCAYCWDVESGKIKMTFKGHSDYLHTVVSRSS 240

Query: 241 VNQIITGSEDGTARIWDCKAGKCIQVIDPAKDNKKQKGNFSCVRCIALDASESWLACADG 300
            +QI+TGSEDGTARIWDCK GKC++VI     +KK +     V  +ALD SESWL C  G
Sbjct: 241 ASQILTGSEDGTARIWDCKTGKCVKVI--GSQDKKSRLR---VSSMALDGSESWLVCGQG 300

Query: 301 RSFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGSILSEIQCAPQ 360
           ++ ++WNLPAS+ +      + +QD++F + QIL VGAEPLL RFD++G++LS+I CAP 
Sbjct: 301 KNLALWNLPASECVQTIPIPAHVQDVMFDEKQILTVGAEPLLRRFDLNGALLSQIHCAPC 360

Query: 361 SAFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTF 395
           S FS+++HP+GV AVGGYGG+VDVISQFGSHLCTF
Sbjct: 361 SVFSISLHPAGVVAVGGYGGIVDVISQFGSHLCTF 362

[Close]

BLAST of Carg21951 vs. TAIR 10
Match: AT3G49660.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 9.3e-13
Identity = 49/159 (30.82%), Postives = 71/159 (44.65%), Query Frame = 0


Query: 113 LQGHDGPTYDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLM 172
           L  H+     VKF  + D  LL S   D  IR +  N   D   PI       EPV    
Sbjct: 20  LTSHNRAVSSVKF--SSDGRLLASASADKTIRTYTINTIND---PI------AEPVQ--- 79

Query: 173 NPQYKGPWGALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLH 232
             ++ G    +S       +A ++ +  I SA+ D     WD+E+G +     GH++Y  
Sbjct: 80  --EFTGHENGISD------VAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAF 139

Query: 233 CIVARNTVNQIITGSEDGTARIWDCKAGKCIQVIDPAKD 272
           C+      N I++GS D T RIWD   GKC++V+    D
Sbjct: 140 CVNFNPQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHSD 156

[Close]

BLAST of Carg21951 vs. TAIR 10
Match: AT2G43770.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 4.3e-10
Identity = 49/158 (31.01%), Postives = 68/158 (43.04%), Query Frame = 0


Query: 109 PHCFLQGHDGPTYDVKFFDAGDNTLLLSCGDDGHIRGWR-WNECTDIEVPIYLQGSHIEP 168
           P   L GH    Y +KF  AG  TL+ S   D  I  WR   +C +  V   L+G H   
Sbjct: 45  PIMLLSGHPSAVYTMKFNPAG--TLIASGSHDREIFLWRVHGDCKNFMV---LKG-HKNA 104

Query: 169 VMDLMNPQYKGPWGALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGH 228
           ++DL        W               +    I SA+ D     WD+E+GK       H
Sbjct: 105 ILDL-------HW--------------TSDGSQIVSASPDKTVRAWDVETGKQIKKMAEH 164

Query: 229 SDYLH-CIVARNTVNQIITGSEDGTARIWDCKAGKCIQ 265
           S +++ C   R     II+GS+DGTA++WD +    IQ
Sbjct: 165 SSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQRGAIQ 175

[Close]

BLAST of Carg21951 vs. TAIR 10
Match: AT1G73720.1 (transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 62.8 bits (151), Expect = 7.3e-10
Identity = 50/225 (22.22%), Postives = 90/225 (40.00%), Query Frame = 0


Query: 116 HDGPTYDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNPQ 175
           HD P   + F  + D+ +L S   DG I+ WR        V I    +H + V       
Sbjct: 262 HDDPVLCIDF--SRDSEMLASGSQDGKIKIWR----IRTGVCIRRFDAHSQGV------- 321

Query: 176 YKGPWGALSPIPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIV 235
                          +++ +     + S + D  A    L+SGK+   F+GH+ Y++  +
Sbjct: 322 --------------TSLSFSRDGSQLLSTSFDQTARIHGLKSGKLLKEFRGHTSYVNHAI 381

Query: 236 ARNTVNQIITGSEDGTARIWDCKAGKCIQVIDPAKDNKKQKGNFSCVR---------CIA 295
             +  ++IIT S D T ++WD K   C+Q   P    +    + + +           + 
Sbjct: 382 FTSDGSRIITASSDCTVKVWDSKTTDCLQTFKPPPPLRGTDASVNSIHLFPKNTEHIVVC 441

Query: 296 LDASESWLACADG---RSFSVWNLPASDFISRTLTRSSMQDMVFC 329
              S  ++    G   +SFS  N    DF++  +  S+  D ++C
Sbjct: 442 NKTSSIYIMTLQGQVVKSFSSGNREGGDFVAACV--STKGDWIYC 457

[Close]

BLAST of Carg21951 vs. TAIR 10
Match: AT3G16650.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 6.9e-08
Identity = 25/86 (29.07%), Postives = 42/86 (48.84%), Query Frame = 0


Query: 186 IPENNAIATNAQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTVNQIIT 245
           I +   +A + +   +FSA  D    CWDLE  K+   + GH   ++C+    T++ ++T
Sbjct: 212 IGQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLHGVYCLALHPTLDVVLT 271

Query: 246 GSEDGTARIWDCKAGKCIQVIDPAKD 272
           G  D   R+WD +    I V+    D
Sbjct: 272 GGRDSVCRVWDIRTKMQIFVLPHDSD 297

The following BLAST results are available for this feature:

BLAST of Carg21951 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021946.1	3.9e-239	100.00	THO complex subunit 6 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6588052.1	9.6e-238	99.50	THO complex subunit 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022934010.1	1.6e-216	91.98	THO complex subunit 6 [Cucurbita moschata]	[more]
XP_023531243.1	3.9e-215	91.48	THO complex subunit 6 [Cucurbita pepo subsp. pepo]	[more]
XP_022967656.1	2.8e-213	91.23	THO complex subunit 6 [Cucurbita maxima]	[more]

BLAST of Carg21951 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L4M1	1.4e-127	54.18	THO complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=THO6 PE=1 SV=1	[more]
Q5XJS5	2.2e-27	27.24	THO complex subunit 6 homolog OS=Danio rerio OX=7955 GN=thoc6 PE=2 SV=1	[more]
Q86W42	2.1e-25	25.69	THO complex subunit 6 homolog OS=Homo sapiens OX=9606 GN=THOC6 PE=1 SV=1	[more]
Q5U4D9	4.6e-25	26.04	THO complex subunit 6 homolog OS=Mus musculus OX=10090 GN=Thoc6 PE=1 SV=1	[more]
Q6AY87	4.6e-25	26.04	THO complex subunit 6 homolog OS=Rattus norvegicus OX=10116 GN=Thoc6 PE=2 SV=1	[more]

BLAST of Carg21951 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F6F8	7.7e-217	91.98	THO complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111441243 PE=3 SV=1	[more]
A0A6J1HSS1	1.4e-213	91.23	THO complex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111467097 PE=3 SV=1	[more]
A0A5A7UQQ6	6.6e-200	84.21	THO complex subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16...	[more]
A0A1S3BQ99	6.6e-200	84.21	THO complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103492340 PE=3 SV=1	[more]
A0A0A0LWJ2	6.1e-198	83.71	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G...	[more]

BLAST of Carg21951 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19430.1	1.0e-128	54.18	DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1	[more]
AT3G49660.1	9.3e-13	30.82	Transducin/WD40 repeat-like superfamily protein	[more]
AT2G43770.1	4.3e-10	31.01	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G73720.1	7.3e-10	22.22	transducin family protein / WD-40 repeat family protein	[more]
AT3G16650.1	6.9e-08	29.07	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 106..147 e-value: 5.2E-4 score: 29.3 coord: 259..306 e-value: 14.0 score: 9.7 coord: 347..385 e-value: 68.0 score: 5.4 coord: 179..214 e-value: 290.0 score: 1.5 coord: 217..256 e-value: 1.8E-6 score: 37.5
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 220..256 e-value: 5.8E-4 score: 20.6 coord: 113..146 e-value: 0.074 score: 14.0 coord: 276..306 e-value: 0.11 score: 13.4
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 224..265 score: 12.981398
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 8..182 e-value: 2.1E-9 score: 39.0
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 183..390 e-value: 1.1E-21 score: 78.9
IPR042626	THO complex subunit 6	PANTHER	PTHR44411	THO COMPLEX SUBUNIT 6 HOMOLOG	coord: 9..396
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 224..256 score: 10.126507
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 38..387

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21951-RA	Carg21951-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009788	negative regulation of abscisic acid-activated signaling pathway
biological_process	GO:0010267	production of ta-siRNAs involved in RNA interference
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006413	translational initiation
cellular_component	GO:0080008	Cul4-RING E3 ubiquitin ligase complex
cellular_component	GO:0000347	THO complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003724	RNA helicase activity
molecular_function	GO:0003743	translation initiation factor activity