Carg21847 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21847
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	photosystem II core complex proteins psbY, chloroplastic
Location	Carg_Chr05: 239764 .. 240372 (+)
RNA-Seq Expression	Carg21847
Synteny	Carg21847

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTACCATGGCAACAATGGCAGTGCTGAGTGTCAAGTGCACAAGCATCAACTCCACCAGAAACCACAACACCCCAAAGCTGATCCCCAAGCCCATCTCCCTTCTCTCTCTTCAGAACCTGCCGAAAGGACTGATCTCATCAAAATCCAATGGACATTCCAACTTATCAACCTTTCTCTCCAGCACCGCCATCGCCGGAGCTGTCTTCTCAGCCCTGAGCTCATCAGATCCTGCCTTCGCAGCCCAACAAATTGCAGATATAGCAGCCGACGGTGACAACCGTGGAATAGCCCTTTTGCTACCTCTTATCCCGGCCATAGCATGGGTTCTGTTCAACATATTACAGCCAGCACTCAACCAGATAAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTGGGATTAGGGGGGTTGACTGCATCAGGGTTTATGTACGCACCTGATGCCTCTGCCAGTGAGCTCGCCATGATTGCCGATGCATCCTCAAGTGATAGCAGGGGCCAGCTTCTGCTGTTTGTCGTAACTCCCGCCATTCTTTGGGTGCTGTACAACATTCTTCAGCCGGCTTTGAATCAGCTCAACAGGATGAGGTCCGAGTGA

mRNA sequence

ATGGCAGCTACCATGGCAACAATGGCAGTGCTGAGTGTCAAGTGCACAAGCATCAACTCCACCAGAAACCACAACACCCCAAAGCTGATCCCCAAGCCCATCTCCCTTCTCTCTCTTCAGAACCTGCCGAAAGGACTGATCTCATCAAAATCCAATGGACATTCCAACTTATCAACCTTTCTCTCCAGCACCGCCATCGCCGGAGCTGTCTTCTCAGCCCTGAGCTCATCAGATCCTGCCTTCGCAGCCCAACAAATTGCAGATATAGCAGCCGACGGTGACAACCGTGGAATAGCCCTTTTGCTACCTCTTATCCCGGCCATAGCATGGGTTCTGTTCAACATATTACAGCCAGCACTCAACCAGATAAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTGGGATTAGGGGGGTTGACTGCATCAGGGTTTATGTACGCACCTGATGCCTCTGCCAGTGAGCTCGCCATGATTGCCGATGCATCCTCAAGTGATAGCAGGGGCCAGCTTCTGCTGTTTGTCGTAACTCCCGCCATTCTTTGGGTGCTGTACAACATTCTTCAGCCGGCTTTGAATCAGCTCAACAGGATGAGGTCCGAGTGA

Coding sequence (CDS)

ATGGCAGCTACCATGGCAACAATGGCAGTGCTGAGTGTCAAGTGCACAAGCATCAACTCCACCAGAAACCACAACACCCCAAAGCTGATCCCCAAGCCCATCTCCCTTCTCTCTCTTCAGAACCTGCCGAAAGGACTGATCTCATCAAAATCCAATGGACATTCCAACTTATCAACCTTTCTCTCCAGCACCGCCATCGCCGGAGCTGTCTTCTCAGCCCTGAGCTCATCAGATCCTGCCTTCGCAGCCCAACAAATTGCAGATATAGCAGCCGACGGTGACAACCGTGGAATAGCCCTTTTGCTACCTCTTATCCCGGCCATAGCATGGGTTCTGTTCAACATATTACAGCCAGCACTCAACCAGATAAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTGGGATTAGGGGGGTTGACTGCATCAGGGTTTATGTACGCACCTGATGCCTCTGCCAGTGAGCTCGCCATGATTGCCGATGCATCCTCAAGTGATAGCAGGGGCCAGCTTCTGCTGTTTGTCGTAACTCCCGCCATTCTTTGGGTGCTGTACAACATTCTTCAGCCGGCTTTGAATCAGCTCAACAGGATGAGGTCCGAGTGA

Protein sequence

MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMRSE

Homology

[Close]

BLAST of Carg21847 vs. NCBI nr
Match: KAG7029231.1 (Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 373.6 bits (958), Expect = 1.1e-99
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60
           MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF
Sbjct: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60

Query: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180
           NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of Carg21847 vs. NCBI nr
Match: KAG6598253.1 (Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 368.6 bits (945), Expect = 3.4e-98
Identity = 200/202 (99.01%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60
           MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSN HSNLS F
Sbjct: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNEHSNLSAF 60

Query: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180
           NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of Carg21847 vs. NCBI nr
Match: XP_038886078.1 (LOW QUALITY PROTEIN: photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 353.6 bits (906), Expect = 1.1e-93
Identity = 190/202 (94.06%), Postives = 197/202 (97.52%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60
           MAATMATMAVLSVKCTSINST+NHNTPK IPKPISLLSLQNLPKGL+SSKSN +SNLST 
Sbjct: 53  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLVSSKSNQNSNLSTI 112

Query: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVFS LSSSDPAFAAQQIA+IAADGDNRG+ALLLPLIPAIAWVLFNILQPAL
Sbjct: 113 LSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 172

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180
           NQIN+MRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVV PA
Sbjct: 173 NQINKMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 232

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 233 ILWVLYNILQPALNQLNRMRSE 254

[Close]

BLAST of Carg21847 vs. NCBI nr
Match: XP_004142959.3 (photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus])

HSP 1 Score: 350.9 bits (899), Expect = 7.3e-93
Identity = 188/202 (93.07%), Postives = 196/202 (97.03%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60
           MAATMATMAVLSVKCTSINST+ HNT K+IPKPISLLSLQNLPKGLISSKSN +SNLSTF
Sbjct: 52  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 111

Query: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVF+ L SSDPAFAAQQIA+IAADGDNRG+ALLLPLIPA+AWVLFNILQPAL
Sbjct: 112 LSSTAIAGAVFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPAL 171

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180
           NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVV PA
Sbjct: 172 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 231

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 232 ILWVLYNILQPALNQLNRMRSE 253

[Close]

BLAST of Carg21847 vs. NCBI nr
Match: KGN62604.2 (hypothetical protein Csa_018753 [Cucumis sativus])

HSP 1 Score: 350.9 bits (899), Expect = 7.3e-93
Identity = 188/202 (93.07%), Postives = 196/202 (97.03%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60
           MAATMATMAVLSVKCTSINST+ HNT K+IPKPISLLSLQNLPKGLISSKSN +SNLSTF
Sbjct: 1   MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 60

Query: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVF+ L SSDPAFAAQQIA+IAADGDNRG+ALLLPLIPA+AWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPAL 120

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180
           NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVV PA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of Carg21847 vs. ExPASy Swiss-Prot
Match: P80470 (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBY PE=1 SV=2)

HSP 1 Score: 191.0 bits (484), Expect = 1.3e-47
Identity = 123/209 (58.85%), Postives = 151/209 (72.25%), Query Frame = 0


Query: 1   MAATMA-TMAVLSVKCTSINSTRNHNT-PKLIPKPISLLSLQNLPKGLISSKSNGHSNLS 60
           MAATMA TMAVL+ KC ++N+ +  +T PK   KPISL      P GL +SK      LS
Sbjct: 1   MAATMATTMAVLNTKCLTLNTNKTTSTSPKPTSKPISL-----SPLGLSNSKL--PMGLS 60

Query: 61  TFLSSTAIAGAVFSALSSSDPAFAAQQIADIAAD---GDNRGIALLLPLIPAIAWVLFNI 120
             +++ AIAGAVF+ L S DPAFA QQ+ADIAA+    DNRG+ALLLP+IPA+ WVLFNI
Sbjct: 61  PIITAPAIAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNI 120

Query: 121 LQPALNQINRMRSD-KGVIIGLGLGGLTASGFMYA-PDASASELAMIADASSSDSRGQLL 180
           LQPALNQIN+MR++ K  I+GLGL GL  SG + A P+A A+   +   A  SD+RG LL
Sbjct: 121 LQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEI---ARGSDNRGTLL 180

Query: 181 LFVVTPAILWVLYNILQPALNQLNRMRSE 203
           L VV PAI WVL+NILQPALNQLN+MRS+
Sbjct: 181 LLVVLPAIGWVLFNILQPALNQLNKMRSQ 199

[Close]

BLAST of Carg21847 vs. ExPASy Swiss-Prot
Match: O49347 (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBY PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 7.0e-46
Identity = 115/205 (56.10%), Postives = 144/205 (70.24%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60
           MAA MAT    + KC S+N           P P  L + Q   K  IS  +    N+S  
Sbjct: 1   MAAAMAT----ATKCMSLN-----------PSPPKLQN-QTKSKPFISLPTPPKPNVSLA 60

Query: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIA---ADGDNRGIALLLPLIPAIAWVLFNILQ 120
           ++STA+AGAVFS+LS S+PA A QQIA +A   A  DNRG+ALLLP++PAIAWVL+NILQ
Sbjct: 61  VTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQ 120

Query: 121 PALNQINRMRSDKGVIIGLGL-GGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFV 180
           PA+NQ+N+MR  KG+++GLG+ GGL ASG +  P  + +  A  A A+SSDSRGQLLL V
Sbjct: 121 PAINQVNKMRESKGIVVGLGIGGGLAASGLLTPPPEAYA--AAEAAAASSDSRGQLLLIV 180

Query: 181 VTPAILWVLYNILQPALNQLNRMRS 202
           VTPA+LWVLYNILQPALNQ+N+MRS
Sbjct: 181 VTPALLWVLYNILQPALNQINKMRS 187

[Close]

BLAST of Carg21847 vs. ExPASy TrEMBL
Match: A0A0A0LKA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350230 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.5e-93
Identity = 188/202 (93.07%), Postives = 196/202 (97.03%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60
           MAATMATMAVLSVKCTSINST+ HNT K+IPKPISLLSLQNLPKGLISSKSN +SNLSTF
Sbjct: 52  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 111

Query: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVF+ L SSDPAFAAQQIA+IAADGDNRG+ALLLPLIPA+AWVLFNILQPAL
Sbjct: 112 LSSTAIAGAVFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPAL 171

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180
           NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVV PA
Sbjct: 172 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 231

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 232 ILWVLYNILQPALNQLNRMRSE 253

[Close]

BLAST of Carg21847 vs. ExPASy TrEMBL
Match: A0A5A7UYJ2 (Photosystem II core complex proteins psbY OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001790 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.8e-92
Identity = 187/202 (92.57%), Postives = 196/202 (97.03%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60
           MAATMATMAVLSVKCTSINST+ HNT K+IPKPISLLSLQNLPKGLISSKSN +SNLSTF
Sbjct: 52  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 111

Query: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVF+ L +SDPAFAAQQIA+IAADGDNRG+ALLLPLIPAIAWVLFNILQPAL
Sbjct: 112 LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 171

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180
           NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVV PA
Sbjct: 172 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 231

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRS+
Sbjct: 232 ILWVLYNILQPALNQLNRMRSK 253

[Close]

BLAST of Carg21847 vs. ExPASy TrEMBL
Match: A0A1S3B9R1 (photosystem II core complex proteins psbY, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487736 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.8e-92
Identity = 187/202 (92.57%), Postives = 196/202 (97.03%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60
           MAATMATMAVLSVKCTSINST+ HNT K+IPKPISLLSLQNLPKGLISSKSN +SNLSTF
Sbjct: 52  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 111

Query: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVF+ L +SDPAFAAQQIA+IAADGDNRG+ALLLPLIPAIAWVLFNILQPAL
Sbjct: 112 LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 171

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180
           NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVV PA
Sbjct: 172 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 231

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRS+
Sbjct: 232 ILWVLYNILQPALNQLNRMRSK 253

[Close]

BLAST of Carg21847 vs. ExPASy TrEMBL
Match: A0A6J1BQF3 (photosystem II core complex proteins psbY, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111004808 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.2e-87
Identity = 179/202 (88.61%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60
           MAATMATMAVLSVKCTSINS++NH TPK I  PISLLSLQNLPK LISSK++ + NLSTF
Sbjct: 1   MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 60

Query: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVFSA SSSDPAFAAQQIA+IAA+GDNRG+ALLLPLIPAIAWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL 120

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180
           NQINRMRSDKGVIIGLGLGGL AS FMYAPDASA+E+AMIADASSSD+RGQLLLFV++PA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPA 180

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of Carg21847 vs. ExPASy TrEMBL
Match: F6GVJ9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0137g00210 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.7e-74
Identity = 158/202 (78.22%), Postives = 177/202 (87.62%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60
           MAAT+ATMA+L+ KC SINS +N N  K   KPISLLS+QNLPKGL + KS+ + NLST 
Sbjct: 1   MAATIATMAMLNAKCLSINSPKNLNLSKPTAKPISLLSIQNLPKGLTTLKSSENQNLSTS 60

Query: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120
           L+ TAIAGA+FS LSS DPA AAQQIA+I ADGDNRG+ALLLP+IPAIAWVLFNILQPAL
Sbjct: 61  LAGTAIAGAIFSTLSSCDPALAAQQIAEI-ADGDNRGLALLLPIIPAIAWVLFNILQPAL 120

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180
           NQ+N+MRS KGVIIGLGLGGL ASGFM  P ASASE+A +ADA+SSD+RGQLLLFVVTPA
Sbjct: 121 NQLNKMRSTKGVIIGLGLGGLAASGFMLTPHASASEIATLADAASSDNRGQLLLFVVTPA 180

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 201

[Close]

BLAST of Carg21847 vs. TAIR 10
Match: AT1G67740.1 (photosystem II BY )

HSP 1 Score: 185.3 bits (469), Expect = 5.0e-47
Identity = 115/205 (56.10%), Postives = 144/205 (70.24%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60
           MAA MAT    + KC S+N           P P  L + Q   K  IS  +    N+S  
Sbjct: 1   MAAAMAT----ATKCMSLN-----------PSPPKLQN-QTKSKPFISLPTPPKPNVSLA 60

Query: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIA---ADGDNRGIALLLPLIPAIAWVLFNILQ 120
           ++STA+AGAVFS+LS S+PA A QQIA +A   A  DNRG+ALLLP++PAIAWVL+NILQ
Sbjct: 61  VTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQ 120

Query: 121 PALNQINRMRSDKGVIIGLGL-GGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFV 180
           PA+NQ+N+MR  KG+++GLG+ GGL ASG +  P  + +  A  A A+SSDSRGQLLL V
Sbjct: 121 PAINQVNKMRESKGIVVGLGIGGGLAASGLLTPPPEAYA--AAEAAAASSDSRGQLLLIV 180

Query: 181 VTPAILWVLYNILQPALNQLNRMRS 202
           VTPA+LWVLYNILQPALNQ+N+MRS
Sbjct: 181 VTPALLWVLYNILQPALNQINKMRS 187

The following BLAST results are available for this feature:

BLAST of Carg21847 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029231.1	1.1e-99	100.00	Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita arg...	[more]
KAG6598253.1	3.4e-98	99.01	Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita arg...	[more]
XP_038886078.1	1.1e-93	94.06	LOW QUALITY PROTEIN: photosystem II core complex proteins psbY, chloroplastic-li...	[more]
XP_004142959.3	7.3e-93	93.07	photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus]	[more]
KGN62604.2	7.3e-93	93.07	hypothetical protein Csa_018753 [Cucumis sativus]	[more]

BLAST of Carg21847 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P80470	1.3e-47	58.85	Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX...	[more]
O49347	7.0e-46	56.10	Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of Carg21847 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKA1	3.5e-93	93.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350230 PE=3 SV=1	[more]
A0A5A7UYJ2	1.8e-92	92.57	Photosystem II core complex proteins psbY OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3B9R1	1.8e-92	92.57	photosystem II core complex proteins psbY, chloroplastic OS=Cucumis melo OX=3656...	[more]
A0A6J1BQF3	2.2e-87	88.61	photosystem II core complex proteins psbY, chloroplastic OS=Momordica charantia ...	[more]
F6GVJ9	1.7e-74	78.22	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0137g00210 PE=3 SV=...	[more]

BLAST of Carg21847 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67740.1	5.0e-47	56.10	photosystem II BY	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009388	Photosystem II PsbY	PFAM	PF06298	PsbY	coord: 94..126 e-value: 9.1E-14 score: 51.0 coord: 167..199 e-value: 2.2E-10 score: 40.2
IPR009388	Photosystem II PsbY	HAMAP	MF_00717	PSII_PsbY	coord: 94..128 score: 10.886137
IPR038760	Photosystem II PsbY, plant	PANTHER	PTHR34790	PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC	coord: 1..202
None	No IPR available	PANTHER	PTHR34790:SF2	SUBFAMILY NOT NAMED	coord: 1..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21847-RA	Carg21847-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034219	carbohydrate transmembrane transport
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0030145	manganese ion binding
molecular_function	GO:0051119	sugar transmembrane transporter activity