Carg21787 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21787
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ran-binding protein like
Location	Carg_Chr09: 1293445 .. 1294638 (+)
RNA-Seq Expression	Carg21787
Synteny	Carg21787

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTTTTGTGAAGAATCGGATGTGGCGCGAGAAGGACAGAGTCGGACGGTCGCATCCGGTGAGAGGCGGATCTGGAGAAACAGTCGGCTGATGAGATTTGGCGGAAAAGCGGTTAATATTTCGAATTAGGTTCCCAATGTTGCCAACGAGATTCTTTGGAGGAGGGAGAGAAGAGAGCGAGTTTCGCCAGGTTGCCTTCCATTTCCTCATCAGATTGTTTTGATTTTCTTGATGTATTTCTTGATTTCGCTTTGAGAATTCAAAGTTCCGAAGAAAATTGTTTGGTTCTTTTGTTTTTGGTGGTGTTTCAGGTAAAATTTCTGACCGCGTTCAGATTTGAGACCCTAGCGTTTCTTCTCTTTTTAATCTCTCCTCTAGCGGGGAGTTGAAGCAGAGCAGACGACAATGGGATGGTGGAGCAGGATGACCTCTCCGTTGCGAAGATTTAGCTTCAGAATCGCGTCTCGTCTAGGATTTCGCAAACGCGGTGCGTGATTTCTGTACTGAATCCTTGTTTATAGAAATGGAAGAGAGTGAATGAATTGAATGGTTGGGGATTTTGTTTGATTAGGACTGCTGAAACTTGGGCGAGATGTGAGGGCTTGCGAATACGGGGACGTGCAGGTGATGTGGGAGATGGTGAAGAGAAACGAAAAGGAGGTGGTTGGCGTCCAGGAGAGACGGCGAAAGAGGAGATCGTTGTTGAATATCTTGTGGTGGGGTGGATCAGGTGCATGCATTGGCTGCAGATTCTGAACAATTCACTTCACAATCCATCCCCACTCTTCTGTTATAAATCCGGCACCATGAATTTGGGTCACAAACAGATTCAAAGTCGAAGAAAAAATCTGCACTCTACACTGATTCGAAGAAGAGGAAGAAGTGATTGCGCAGTTTAATCCAATCTTGACCAGACCCCCTCGCTTCTCTCCTTGCTTCCTTATCTATAAAATAATAAACTAAATTTTGGTATATGCAATTTCATCGTTTTTCTTTATCTCTCGTTTCCAATATTCATACTGTGGATTGCTGATTCAATACCCAATCCTTTTTCCCTCCGGAAACGAATAATTATTAATGTTCTCCATATTTTTAGATTAATCTTATTTTACAAGCCAACGTTCTTACAATATAATTTTTCAAAGAACAAAAACAGAGCATCTTTATTGATGCACTTTATGGCTGTTATTA

mRNA sequence

ATGCGGTTTTGTGAAGAATCGGATGTGGCGCGAGAAGGACAGAGTCGGACGGTCGCATCCGGTGAGAGGCGGATCTGGAGAAACAGTCGGCTGATGAGATTTGGCGGAAAAGCGCGGGGAGTTGAAGCAGAGCAGACGACAATGGGATGGTGGAGCAGGATGACCTCTCCGTTGCGAAGATTTAGCTTCAGAATCGCGTCTCGTCTAGGATTTCGCAAACGCGGACTGCTGAAACTTGGGCGAGATGTGAGGGCTTGCGAATACGGGGACGTGCAGGTGATGTGGGAGATGGTGAAGAGAAACGAAAAGGAGGTGGTTGGCGTCCAGGAGAGACGGCGAAAGAGGAGATCGTTGTTGAATATCTTGTGGTGGGGTGGATCAGGTGCATGCATTGGCTGCAGATTCTGAACAATTCACTTCACAATCCATCCCCACTCTTCTGTTATAAATCCGGCACCATGAATTTGGGTCACAAACAGATTCAAAGTCGAAGAAAAAATCTGCACTCTACACTGATTCGAAGAAGAGGAAGAAGTGATTGCGCAGTTTAATCCAATCTTGACCAGACCCCCTCGCTTCTCTCCTTGCTTCCTTATCTATAAAATAATAAACTAAATTTTGGTATATGCAATTTCATCGTTTTTCTTTATCTCTCGTTTCCAATATTCATACTGTGGATTGCTGATTCAATACCCAATCCTTTTTCCCTCCGGAAACGAATAATTATTAATGTTCTCCATATTTTTAGATTAATCTTATTTTACAAGCCAACGTTCTTACAATATAATTTTTCAAAGAACAAAAACAGAGCATCTTTATTGATGCACTTTATGGCTGTTATTA

Coding sequence (CDS)

ATGCGGTTTTGTGAAGAATCGGATGTGGCGCGAGAAGGACAGAGTCGGACGGTCGCATCCGGTGAGAGGCGGATCTGGAGAAACAGTCGGCTGATGAGATTTGGCGGAAAAGCGCGGGGAGTTGAAGCAGAGCAGACGACAATGGGATGGTGGAGCAGGATGACCTCTCCGTTGCGAAGATTTAGCTTCAGAATCGCGTCTCGTCTAGGATTTCGCAAACGCGGACTGCTGAAACTTGGGCGAGATGTGAGGGCTTGCGAATACGGGGACGTGCAGGTGATGTGGGAGATGGTGAAGAGAAACGAAAAGGAGGTGGTTGGCGTCCAGGAGAGACGGCGAAAGAGGAGATCGTTGTTGAATATCTTGTGGTGGGGTGGATCAGGTGCATGCATTGGCTGCAGATTCTGA

Protein sequence

MRFCEESDVAREGQSRTVASGERRIWRNSRLMRFGGKARGVEAEQTTMGWWSRMTSPLRRFSFRIASRLGFRKRGLLKLGRDVRACEYGDVQVMWEMVKRNEKEVVGVQERRRKRRSLLNILWWGGSGACIGCRF

Homology

[Close]

BLAST of Carg21787 vs. NCBI nr
Match: KAG7024293.1 (hypothetical protein SDJN02_13107, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 279.3 bits (713), Expect = 1.8e-71
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MRFCEESDVAREGQSRTVASGERRIWRNSRLMRFGGKARGVEAEQTTMGWWSRMTSPLRR 60
           MRFCEESDVAREGQSRTVASGERRIWRNSRLMRFGGKARGVEAEQTTMGWWSRMTSPLRR
Sbjct: 1   MRFCEESDVAREGQSRTVASGERRIWRNSRLMRFGGKARGVEAEQTTMGWWSRMTSPLRR 60

Query: 61  FSFRIASRLGFRKRGLLKLGRDVRACEYGDVQVMWEMVKRNEKEVVGVQERRRKRRSLLN 120
           FSFRIASRLGFRKRGLLKLGRDVRACEYGDVQVMWEMVKRNEKEVVGVQERRRKRRSLLN
Sbjct: 61  FSFRIASRLGFRKRGLLKLGRDVRACEYGDVQVMWEMVKRNEKEVVGVQERRRKRRSLLN 120

Query: 121 ILWWGGSGACIGCRF 136
           ILWWGGSGACIGCRF
Sbjct: 121 ILWWGGSGACIGCRF 135

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BLAST of Carg21787 vs. NCBI nr
Match: KAG6591414.1 (hypothetical protein SDJN03_13760, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 185.3 bits (469), Expect = 3.6e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 39  RGVEAEQTTMGWWSRMTSPLRRFSFRIASRLGFRKRGLLKLGRDVRACEYGDVQVMWEMV 98
           RGVEAEQTTMGWWSRMTSPLRRFSFRIASRLGFRKRGLLKLGRDVRACEYGDVQVMWEMV
Sbjct: 14  RGVEAEQTTMGWWSRMTSPLRRFSFRIASRLGFRKRGLLKLGRDVRACEYGDVQVMWEMV 73

Query: 99  KRNEKEVVGVQERRRKRRSLLNILWWGGS 128
           KRNEKEVVGVQERRRKRRSLLNILWWGGS
Sbjct: 74  KRNEKEVVGVQERRRKRRSLLNILWWGGS 102

[Close]

BLAST of Carg21787 vs. NCBI nr
Match: KAG6608437.1 (hypothetical protein SDJN03_01779, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.5 bits (345), Expect = 8.5e-29
Identity = 65/105 (61.90%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 32  MRFGGKARGVEAEQTTMGWWSRMTSPLRRFSFRIASRLGFRKRGLLKLGRDVRACEYGDV 91
           ++F   A  +  E + M WW ++ SPLRRF+ R+ASRLG+RKRGLLKLGRDV+ACEY DV
Sbjct: 53  LKFEILASLLSLEHSKMEWWIKVASPLRRFTSRVASRLGYRKRGLLKLGRDVKACEYEDV 112

Query: 92  QVMWEMVKRNEKEVVGVQE-RRRKRRSLLNILWWGGSGACIGCRF 136
            VMWEM+KRNE E VG+ E RRRK+R + NI WW  S  CIGCRF
Sbjct: 113 HVMWEMLKRNETEAVGIPEGRRRKKRPIWNIFWWARSAPCIGCRF 157

[Close]

BLAST of Carg21787 vs. NCBI nr
Match: EOY15758.1 (Uncharacterized protein TCM_034727 [Theobroma cacao])

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-12
Identity = 44/77 (57.14%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 48  MGWWSRMTSPLRRFSFRIASRLGFRKRGLLKLGRDVRACEYGDVQVMWEMVKRNEKEVVG 107
           M ++ RMT P+RR    +A+RLG RK GLLKL +DVR+CEY DV VMWEM++RNE E VG
Sbjct: 88  MHFFDRMTIPMRRVWTGVATRLGVRKSGLLKLRKDVRSCEYEDVHVMWEMLRRNETE-VG 147

Query: 108 VQERRRKRRSLLNILWW 125
              RR K+R L N   W
Sbjct: 148 RSPRRCKKRPLSNCFEW 163

[Close]

BLAST of Carg21787 vs. NCBI nr
Match: XP_027923459.1 (uncharacterized protein LOC114181253 isoform X2 [Vigna unguiculata])

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-12
Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 48  MGWWSRMTSPLRRFSFRIASRLGFRKRGLLKLGRDVRACEYGDVQVMWEMVKRNEKEVVG 107
           + WW  M  PLRR  F +A+R GFRK GLLKL  DVRACEY D+QVMWEM+ RNE E   
Sbjct: 9   VNWWRNMMYPLRRVWFSVATRFGFRKNGLLKLRHDVRACEYEDIQVMWEMLNRNESEFGH 68

Query: 108 VQERRRKRRS 118
             ++  K  S
Sbjct: 69  SSKKSNKNNS 78

[Close]

BLAST of Carg21787 vs. ExPASy TrEMBL
Match: A0A0A0L522 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642370 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.8e-25
Identity = 56/86 (65.12%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 48  MGWWSRMTSPLRRFSFRIASRLGFRKRGLLKLGRDVRACEYGDVQVMWEMVKRNE-KEVV 107
           M WW +M++PLR F+FR+A RLGFRKRGL+KLGRDV+ACEY DV VMWEM+KRNE  +++
Sbjct: 1   MEWWIKMSAPLRSFTFRVACRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60

Query: 108 GVQERRRKRRSLLNILWWGGSGACIG 133
           G  ERR+KR+SL NI WW  S  C+G
Sbjct: 61  GSSERRQKRKSLWNIFWWARSAPCLG 86

[Close]

BLAST of Carg21787 vs. ExPASy TrEMBL
Match: A0A061FFT5 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034727 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 9.2e-13
Identity = 44/77 (57.14%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 48  MGWWSRMTSPLRRFSFRIASRLGFRKRGLLKLGRDVRACEYGDVQVMWEMVKRNEKEVVG 107
           M ++ RMT P+RR    +A+RLG RK GLLKL +DVR+CEY DV VMWEM++RNE E VG
Sbjct: 88  MHFFDRMTIPMRRVWTGVATRLGVRKSGLLKLRKDVRSCEYEDVHVMWEMLRRNETE-VG 147

Query: 108 VQERRRKRRSLLNILWW 125
              RR K+R L N   W
Sbjct: 148 RSPRRCKKRPLSNCFEW 163

[Close]

BLAST of Carg21787 vs. ExPASy TrEMBL
Match: A0A218WD46 (uncharacterized protein LOC116215154 OS=Punica granatum OX=22663 GN=LOC116215154 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-12
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 51  WSRMTSPLRRFSFRIASRLGFRKRGLLKLGRDVRACEYGDVQVMWEMVKRNEKEVVGVQE 110
           W +M  PLR     +A+RLG R RGLLKL +DVR CEY DV VMW M+K+NE E   +  
Sbjct: 6   WDKMRVPLRNLWIDVATRLGVRNRGLLKLRQDVRRCEYDDVHVMWNMLKKNETEAAALSP 65

Query: 111 RRRKRRSLLNILWW 125
           +RRK+RS  +   W
Sbjct: 66  KRRKKRSFWSFFDW 79

[Close]

BLAST of Carg21787 vs. ExPASy TrEMBL
Match: A0A7N2RF01 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-12
Identity = 43/88 (48.86%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 47  TMGWWSRMTSPLRRFSFRIASRLGFRKRGLLKLGRDVRACEYGDVQVMWEMVKRNEKEVV 106
           +M WW ++  P+RR    +A+RLG RK GLLKL  DV  CEY DV+VMWEM+KR+E E  
Sbjct: 2   SMEWWDKVKIPIRRVWIGVATRLGIRKSGLLKLRHDVSTCEYEDVRVMWEMLKRSETE-- 61

Query: 107 GVQERRRKRRSLLNILWWGGSGACIGCR 135
            V   + K+RS  NI  W     C+ CR
Sbjct: 62  QVVPEKSKKRSFWNIFDWARCTPCL-CR 86

[Close]

BLAST of Carg21787 vs. ExPASy TrEMBL
Match: A0A0B2RLV9 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_050159 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.7e-12
Identity = 42/88 (47.73%), Postives = 51/88 (57.95%), Query Frame = 0


Query: 50  WWSRMTSPLRRFSFRIASRLGFRKRGLLKLGRDVRACEYGDVQVMWEMVKRNEKEVVGVQ 109
           WW  M  P+RR  F +A RLG RK GLLKL  DVRACEY D+QVMWE++ RNE E     
Sbjct: 13  WWQNMMFPVRRVWFVVAKRLGIRKNGLLKLSNDVRACEYEDIQVMWEILNRNESEFGHSS 72

Query: 110 ERRR---KRRSLLNILWWGGSGACIGCR 135
             R+   K+     +L W     C+ CR
Sbjct: 73  STRKGNNKKGHCWKLLRWARCAPCM-CR 99

[Close]

BLAST of Carg21787 vs. TAIR 10
Match: AT5G43150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-10
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 50  WWSRMTSPLRRFSFRIASRLGFRKRGLLKLGRDVRACEYGDVQVMWEMVKRNEKEV-VGV 109
           WW+ M  P RR   R   R+GFR  GLL+L  DV +CEY D+ +MW ++ +NE    V +
Sbjct: 9   WWNTMAFPTRRIWNRFTVRVGFRHSGLLRLEHDVSSCEYEDIHIMWNLLHKNEDLTRVPI 68

Query: 110 QERRRKRR 117
           Q+++++R+
Sbjct: 69  QQQQQQRK 76

The following BLAST results are available for this feature:

BLAST of Carg21787 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024293.1	1.8e-71	100.00	hypothetical protein SDJN02_13107, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6591414.1	3.6e-43	100.00	hypothetical protein SDJN03_13760, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6608437.1	8.5e-29	61.90	hypothetical protein SDJN03_01779, partial [Cucurbita argyrosperma subsp. sorori...	[more]
EOY15758.1	1.9e-12	57.14	Uncharacterized protein TCM_034727 [Theobroma cacao]	[more]
XP_027923459.1	1.9e-12	55.71	uncharacterized protein LOC114181253 isoform X2 [Vigna unguiculata]	[more]

BLAST of Carg21787 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg21787 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L522	2.8e-25	65.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642370 PE=4 SV=1	[more]
A0A061FFT5	9.2e-13	57.14	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034727 PE=4 SV=1	[more]
A0A218WD46	1.2e-12	51.35	uncharacterized protein LOC116215154 OS=Punica granatum OX=22663 GN=LOC116215154...	[more]
A0A7N2RF01	1.2e-12	48.86	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A0B2RLV9	2.7e-12	47.73	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_050159 PE=4 SV=1	[more]

BLAST of Carg21787 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43150.1	3.2e-10	41.18	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181:SF4	EXPRESSED PROTEIN	coord: 48..128
None	No IPR available	PANTHER	PTHR33181	OS01G0778500 PROTEIN	coord: 48..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21787-RA	Carg21787-RA	mRNA