Carg21784 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21784
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	LOB domain-containing protein
Location	Carg_Chr09: 1307442 .. 1308120 (-)
RNA-Seq Expression	Carg21784
Synteny	Carg21784

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGCAGCGGCTGCAGAGTGCTTCGAAAGGGCTGCAACGAAGCTTGCGTTCTAAGGTCCAGTCTCCACTGGATTCATTCGCCGGAAGCCCAGGCCAACGCCACCTTGTTTCTCGCTAAATTCTTTGGCCGTAGTGATCTCTTGTCCTTCATCGCCGCCGTCCCCCATCATCAAAGACCTGGTAACTTAGTTTTTCTTCTTTTAAAATTCCGTAATCAACTCTGAGATTTTCCCCTGTTTCTTTCTTCAAGCTCTGTTTCAGTCTCTGTTATTCGAGGCTTGCGGCCGCACCGTCAACCCAGTTAGCGGCGCCGTTGGTCTCTTGTCCAGCGGGAACTGGCACGTCTGTCAGCTGGCGGCGGAAACCGTTCTCAGCGGCGGAGTTCTCCGCCCCATACCCGGAATCGAACTTTCGGGAAATCCCACGCGCAACGTCGATGATTCCTCCCTTACTTCCAATACCGATGTCTGGACCACCACCGGACAAAATCTTCAACTCTACCCATCCACTCCGTCGGATTTCCGGTGCCTCCCTGATCTCGCCGTCGCCGCCGGAAGAGCGAAGAATCATACCCTGGAGAATCGGCGGTCTCTAGATTCCGAAGACTCGATCATGACCAGCTTCGGAAGCGGCGACCGGCGGAAACAGAGGAAGCTTTTAAATTTATTCATCTGA

mRNA sequence

ATGAGTTGCAGCGGCTGCAGAGTGCTTCGAAAGGGCTGCAACGAAGCTTGCGTTCTAAGGTCCAGTCTCCACTGGATTCATTCGCCGGAAGCCCAGGCCAACGCCACCTTGTTTCTCGCTAAATTCTTTGGCCGTAGTGATCTCTTGTCCTTCATCGCCGCCGTCCCCCATCATCAAAGACCTGCTCTGTTTCAGTCTCTGTTATTCGAGGCTTGCGGCCGCACCGTCAACCCAGTTAGCGGCGCCGTTGGTCTCTTGTCCAGCGGGAACTGGCACGTCTGTCAGCTGGCGGCGGAAACCGTTCTCAGCGGCGGAGTTCTCCGCCCCATACCCGGAATCGAACTTTCGGGAAATCCCACGCGCAACGTCGATGATTCCTCCCTTACTTCCAATACCGATGTCTGGACCACCACCGGACAAAATCTTCAACTCTACCCATCCACTCCGTCGGATTTCCGGTGCCTCCCTGATCTCGCCGTCGCCGCCGGAAGAGCGAAGAATCATACCCTGGAGAATCGGCGGTCTCTAGATTCCGAAGACTCGATCATGACCAGCTTCGGAAGCGGCGACCGGCGGAAACAGAGGAAGCTTTTAAATTTATTCATCTGA

Coding sequence (CDS)

ATGAGTTGCAGCGGCTGCAGAGTGCTTCGAAAGGGCTGCAACGAAGCTTGCGTTCTAAGGTCCAGTCTCCACTGGATTCATTCGCCGGAAGCCCAGGCCAACGCCACCTTGTTTCTCGCTAAATTCTTTGGCCGTAGTGATCTCTTGTCCTTCATCGCCGCCGTCCCCCATCATCAAAGACCTGCTCTGTTTCAGTCTCTGTTATTCGAGGCTTGCGGCCGCACCGTCAACCCAGTTAGCGGCGCCGTTGGTCTCTTGTCCAGCGGGAACTGGCACGTCTGTCAGCTGGCGGCGGAAACCGTTCTCAGCGGCGGAGTTCTCCGCCCCATACCCGGAATCGAACTTTCGGGAAATCCCACGCGCAACGTCGATGATTCCTCCCTTACTTCCAATACCGATGTCTGGACCACCACCGGACAAAATCTTCAACTCTACCCATCCACTCCGTCGGATTTCCGGTGCCTCCCTGATCTCGCCGTCGCCGCCGGAAGAGCGAAGAATCATACCCTGGAGAATCGGCGGTCTCTAGATTCCGAAGACTCGATCATGACCAGCTTCGGAAGCGGCGACCGGCGGAAACAGAGGAAGCTTTTAAATTTATTCATCTGA

Protein sequence

MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPTRNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAGRAKNHTLENRRSLDSEDSIMTSFGSGDRRKQRKLLNLFI

Homology

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BLAST of Carg21784 vs. NCBI nr
Match: KAG7024296.1 (LOB domain-containing protein 38, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 411.8 bits (1057), Expect = 3.5e-111
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60
           MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR
Sbjct: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT 120
           PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT 120

Query: 121 RNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAGRAKNHTLENRRSLDSED 180
           RNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAGRAKNHTLENRRSLDSED
Sbjct: 121 RNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAGRAKNHTLENRRSLDSED 180

Query: 181 SIMTSFGSGDRRKQRKLLNLFI 203
           SIMTSFGSGDRRKQRKLLNLFI
Sbjct: 181 SIMTSFGSGDRRKQRKLLNLFI 202

[Close]

BLAST of Carg21784 vs. NCBI nr
Match: KAG6591416.1 (LOB domain-containing protein 38, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 411.0 bits (1055), Expect = 6.0e-111
Identity = 201/202 (99.50%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60
           MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR
Sbjct: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT 120
           PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRP+PGIELSGNPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPLPGIELSGNPT 120

Query: 121 RNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAGRAKNHTLENRRSLDSED 180
           RNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAGRAKNHTLENRRSLDSED
Sbjct: 121 RNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAGRAKNHTLENRRSLDSED 180

Query: 181 SIMTSFGSGDRRKQRKLLNLFI 203
           SIMTSFGSGDRRKQRKLLNLFI
Sbjct: 181 SIMTSFGSGDRRKQRKLLNLFI 202

[Close]

BLAST of Carg21784 vs. NCBI nr
Match: XP_022936853.1 (LOB domain-containing protein 38-like [Cucurbita moschata])

HSP 1 Score: 405.6 bits (1041), Expect = 2.5e-109
Identity = 200/202 (99.01%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60
           MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR
Sbjct: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT 120
           PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT 120

Query: 121 RNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAGRAKNHTLENRRSLDSED 180
           RNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAA RAKNHT ENRRSLDSED
Sbjct: 121 RNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAVRAKNHTPENRRSLDSED 180

Query: 181 SIMTSFGSGDRRKQRKLLNLFI 203
           SIMTSFGSGDRRKQRKLLNLFI
Sbjct: 181 SIMTSFGSGDRRKQRKLLNLFI 202

[Close]

BLAST of Carg21784 vs. NCBI nr
Match: XP_023535944.1 (LOB domain-containing protein 39-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 401.7 bits (1031), Expect = 3.6e-108
Identity = 197/202 (97.52%), Postives = 199/202 (98.51%), Query Frame = 0


Query: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60
           MSCSGCRVLRKGCNEACVLRSSLHWI SPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR
Sbjct: 1   MSCSGCRVLRKGCNEACVLRSSLHWIRSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT 120
           PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAA+TVLSGGVLRPIPGIELSGNPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAADTVLSGGVLRPIPGIELSGNPT 120

Query: 121 RNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAGRAKNHTLENRRSLDSED 180
           RNVDDS+LT NTDVWTTT QNLQLYPSTPSDFRCLPDLAVAAGRAKNHTLENRRSLDSED
Sbjct: 121 RNVDDSTLTFNTDVWTTTAQNLQLYPSTPSDFRCLPDLAVAAGRAKNHTLENRRSLDSED 180

Query: 181 SIMTSFGSGDRRKQRKLLNLFI 203
           SIMTSFGSGDRRKQRKLLNLFI
Sbjct: 181 SIMTSFGSGDRRKQRKLLNLFI 202

[Close]

BLAST of Carg21784 vs. NCBI nr
Match: XP_022977110.1 (LOB domain-containing protein 39-like [Cucurbita maxima] >XP_022977111.1 LOB domain-containing protein 39-like [Cucurbita maxima])

HSP 1 Score: 379.0 bits (972), Expect = 2.5e-101
Identity = 189/202 (93.56%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60
           MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR
Sbjct: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT 120
           PALFQSLLFEACGRTVNPVSGAVGL SSGNWHVCQLAA+TVLSGGVLRPIPGIELSGNPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLFSSGNWHVCQLAADTVLSGGVLRPIPGIELSGNPT 120

Query: 121 RNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAGRAKNHTLENRRSLDSED 180
           RN+DDSSLT NTDVWTTT QNLQLYPS+PSDFRCLPDLAVAA  AK     NRRSLDSED
Sbjct: 121 RNLDDSSLTFNTDVWTTTAQNLQLYPSSPSDFRCLPDLAVAARTAK-----NRRSLDSED 180

Query: 181 SIMTSFGSGDRRKQRKLLNLFI 203
           SIMTSFGSGDRRKQRKLLNLFI
Sbjct: 181 SIMTSFGSGDRRKQRKLLNLFI 197

[Close]

BLAST of Carg21784 vs. ExPASy Swiss-Prot
Match: Q9SN23 (LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-43
Identity = 86/131 (65.65%), Postives = 105/131 (80.15%), Query Frame = 0


Query: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60
           MSC+GCRVLRKGC+E C+LR  + WI SPEAQ +AT+F+AKFFGR+ L+SFI+AVP  Q 
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIP----GIELS 120
           PALFQSLL+EACGRTVNPV+GAVGLL +GNW+VCQ A ETVL GG L+PIP    G   +
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFA 120

Query: 121 GNPTRNVDDSS 128
           G P+   D++S
Sbjct: 121 GFPSPTSDEAS 131

[Close]

BLAST of Carg21784 vs. ExPASy Swiss-Prot
Match: Q9SZE8 (LOB domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=LBD39 PE=2 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.5e-43
Identity = 106/240 (44.17%), Postives = 139/240 (57.92%), Query Frame = 0


Query: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60
           MSC+GCRVLRKGC+E C+LR  L WI S E+Q +AT+F+AKFFGR+ L+SFI++VP  QR
Sbjct: 1   MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGI------- 120
           PALFQSLLFEACGRTVNPV+GAVG+L + NWHVCQ A ETVL GG LRPI  +       
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISDLLESPSLM 120

Query: 121 ------------ELSGNPTRNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVA 180
                       ++S N T +   S+  S T++  +     +L   +  D +    L + 
Sbjct: 121 ISCDESSEIWHQDVSRNQTHHCRFSTSRSTTEMKDSLVNRKRLKSDSDLDLQVNHGLTLT 180

Query: 181 AGRAKNHTLE----------NRRSLDSEDSIMTSFGS----GDRRKQR-----KLLNLFI 203
           A       L           +R    SE+S+ TS       GD +++R     KLLNLF+
Sbjct: 181 APAVPVPFLPPSSFCKVVKGDRPGSPSEESVTTSCWENGMRGDNKQKRNKGEKKLLNLFV 240

[Close]

BLAST of Carg21784 vs. ExPASy Swiss-Prot
Match: Q9FN11 (LOB domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=LBD37 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.6e-42
Identity = 90/182 (49.45%), Postives = 121/182 (66.48%), Query Frame = 0


Query: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60
           MSC+GCRVLRKGC+E C+LR  + WI + +AQ +AT+F+AKFFGR+ L+SFI+AVP  QR
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT 120
           PALFQSLL+EACGRTVNPV+GA+G+L +GNW++CQ A ETVL GG LRPIP +   G   
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGF 120

Query: 121 RNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAGRA--KNHTLENRRSLDS 180
                 +    +++ T    NLQ   ST  +       + +  R+   + +   R+ L S
Sbjct: 121 AGFPSPTSEEASEICTEM-LNLQQNDSTDRNIYHHSRFSSSRSRSTMDSSSPTKRKRLSS 180

[Close]

BLAST of Carg21784 vs. ExPASy Swiss-Prot
Match: Q9ZW96 (LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.0e-36
Identity = 68/110 (61.82%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60
           MSC+GCRVLRKGC+E C +R  L WI S E+QANAT+FLAKF+GR+ L++ +   P H R
Sbjct: 3   MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLR 62

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPI 111
           PA+F+SLL+EACGR VNP+ G+VGLL SGNWH+CQ A E V+ G  + PI
Sbjct: 63  PAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPI 112

[Close]

BLAST of Carg21784 vs. ExPASy Swiss-Prot
Match: Q9M886 (LOB domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=LBD41 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.2e-35
Identity = 69/110 (62.73%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60
           MSC+GCRVLRKGC+E C +R  L WI SPEAQANAT+FLAKF+GR+ L++ I A P+H R
Sbjct: 3   MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLR 62

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPI 111
           P +F+SLL EACGR VNP+ G+VGLL SGNW +CQ A E V+ G  ++ I
Sbjct: 63  PGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEI 112

[Close]

BLAST of Carg21784 vs. ExPASy TrEMBL
Match: A0A6J1FEE1 (LOB domain-containing protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443315 PE=3 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.2e-109
Identity = 200/202 (99.01%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60
           MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR
Sbjct: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT 120
           PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT 120

Query: 121 RNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAGRAKNHTLENRRSLDSED 180
           RNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAA RAKNHT ENRRSLDSED
Sbjct: 121 RNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAVRAKNHTPENRRSLDSED 180

Query: 181 SIMTSFGSGDRRKQRKLLNLFI 203
           SIMTSFGSGDRRKQRKLLNLFI
Sbjct: 181 SIMTSFGSGDRRKQRKLLNLFI 202

[Close]

BLAST of Carg21784 vs. ExPASy TrEMBL
Match: A0A6J1IIW5 (LOB domain-containing protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC111477277 PE=3 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.2e-101
Identity = 189/202 (93.56%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60
           MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR
Sbjct: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT 120
           PALFQSLLFEACGRTVNPVSGAVGL SSGNWHVCQLAA+TVLSGGVLRPIPGIELSGNPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLFSSGNWHVCQLAADTVLSGGVLRPIPGIELSGNPT 120

Query: 121 RNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAGRAKNHTLENRRSLDSED 180
           RN+DDSSLT NTDVWTTT QNLQLYPS+PSDFRCLPDLAVAA  AK     NRRSLDSED
Sbjct: 121 RNLDDSSLTFNTDVWTTTAQNLQLYPSSPSDFRCLPDLAVAARTAK-----NRRSLDSED 180

Query: 181 SIMTSFGSGDRRKQRKLLNLFI 203
           SIMTSFGSGDRRKQRKLLNLFI
Sbjct: 181 SIMTSFGSGDRRKQRKLLNLFI 197

[Close]

BLAST of Carg21784 vs. ExPASy TrEMBL
Match: A0A5A7VDI5 (LOB domain-containing protein 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G001480 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.7e-92
Identity = 169/205 (82.44%), Postives = 184/205 (89.76%), Query Frame = 0


Query: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60
           MSC+GCRVLRKGC+EACVLRSSLHWI SPEAQ NATLFLAKFFGRSDLLSFI+AVP+HQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT 120
           PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQ AA+T+L+GGVLRPIPGIE+SGNPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAADTILNGGVLRPIPGIEISGNPT 120

Query: 121 RNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAGRAKNHTLENRRSLDSED 180
            N+DDSS T N DVWTTT  NLQ YPSTPSDFRCLPDL +   R K H LENRRSLDSE+
Sbjct: 121 PNLDDSSFTFNNDVWTTTTHNLQFYPSTPSDFRCLPDLGL--NRTKKHPLENRRSLDSEE 180

Query: 181 SIMTSFGSGD---RRKQRKLLNLFI 203
           S+MTSFGSGD   +RK+ KLLNLF+
Sbjct: 181 SVMTSFGSGDLGEQRKETKLLNLFV 203

[Close]

BLAST of Carg21784 vs. ExPASy TrEMBL
Match: A0A1S3BVG9 (LOB domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LOC103493596 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.7e-92
Identity = 169/205 (82.44%), Postives = 184/205 (89.76%), Query Frame = 0


Query: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60
           MSC+GCRVLRKGC+EACVLRSSLHWI SPEAQ NATLFLAKFFGRSDLLSFI+AVP+HQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT 120
           PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQ AA+T+L+GGVLRPIPGIE+SGNPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAADTILNGGVLRPIPGIEISGNPT 120

Query: 121 RNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAGRAKNHTLENRRSLDSED 180
            N+DDSS T N DVWTTT  NLQ YPSTPSDFRCLPDL +   R K H LENRRSLDSE+
Sbjct: 121 PNLDDSSFTFNNDVWTTTTHNLQFYPSTPSDFRCLPDLGL--NRTKKHPLENRRSLDSEE 180

Query: 181 SIMTSFGSGD---RRKQRKLLNLFI 203
           S+MTSFGSGD   +RK+ KLLNLF+
Sbjct: 181 SVMTSFGSGDLGEQRKETKLLNLFV 203

[Close]

BLAST of Carg21784 vs. ExPASy TrEMBL
Match: A0A0A0L3S5 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G642430 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 4.3e-91
Identity = 172/207 (83.09%), Postives = 189/207 (91.30%), Query Frame = 0


Query: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60
           MSC+GCRVLRKGC+EACVLRSSLHWI SPEAQ NATLFLAKFFGRSDLLSFI+AVP+HQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT 120
           PALFQSLLFEACGRTVNPVSGAVGLLS+GNWHVCQ AA+T+L+GGVLRPIPGIE+S NPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPT 120

Query: 121 RNVDDSSLTSNTDVWTTTG-QNLQLYPSTPSDFRCLPDLAVAAGRAKN-HTLENRRSLDS 180
            N+DDSSLT NTDVWTTT   NLQ YPSTPSDFRCLPDL++  GRAKN H LENRRSLDS
Sbjct: 121 PNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSL--GRAKNHHPLENRRSLDS 180

Query: 181 EDSIMTSFGS---GDRRKQRKLLNLFI 203
           E+S+MTSFGS   GD+RK+ KLLNLF+
Sbjct: 181 EESVMTSFGSGDLGDQRKETKLLNLFV 205

[Close]

BLAST of Carg21784 vs. TAIR 10
Match: AT3G49940.1 (LOB domain-containing protein 38 )

HSP 1 Score: 177.9 bits (450), Expect = 7.9e-45
Identity = 86/131 (65.65%), Postives = 105/131 (80.15%), Query Frame = 0


Query: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60
           MSC+GCRVLRKGC+E C+LR  + WI SPEAQ +AT+F+AKFFGR+ L+SFI+AVP  Q 
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIP----GIELS 120
           PALFQSLL+EACGRTVNPV+GAVGLL +GNW+VCQ A ETVL GG L+PIP    G   +
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFA 120

Query: 121 GNPTRNVDDSS 128
           G P+   D++S
Sbjct: 121 GFPSPTSDEAS 131

[Close]

BLAST of Carg21784 vs. TAIR 10
Match: AT4G37540.1 (LOB domain-containing protein 39 )

HSP 1 Score: 176.8 bits (447), Expect = 1.8e-44
Identity = 106/240 (44.17%), Postives = 139/240 (57.92%), Query Frame = 0


Query: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60
           MSC+GCRVLRKGC+E C+LR  L WI S E+Q +AT+F+AKFFGR+ L+SFI++VP  QR
Sbjct: 1   MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGI------- 120
           PALFQSLLFEACGRTVNPV+GAVG+L + NWHVCQ A ETVL GG LRPI  +       
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISDLLESPSLM 120

Query: 121 ------------ELSGNPTRNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVA 180
                       ++S N T +   S+  S T++  +     +L   +  D +    L + 
Sbjct: 121 ISCDESSEIWHQDVSRNQTHHCRFSTSRSTTEMKDSLVNRKRLKSDSDLDLQVNHGLTLT 180

Query: 181 AGRAKNHTLE----------NRRSLDSEDSIMTSFGS----GDRRKQR-----KLLNLFI 203
           A       L           +R    SE+S+ TS       GD +++R     KLLNLF+
Sbjct: 181 APAVPVPFLPPSSFCKVVKGDRPGSPSEESVTTSCWENGMRGDNKQKRNKGEKKLLNLFV 240

[Close]

BLAST of Carg21784 vs. TAIR 10
Match: AT5G67420.1 (LOB domain-containing protein 37 )

HSP 1 Score: 172.9 bits (437), Expect = 2.5e-43
Identity = 90/182 (49.45%), Postives = 121/182 (66.48%), Query Frame = 0


Query: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60
           MSC+GCRVLRKGC+E C+LR  + WI + +AQ +AT+F+AKFFGR+ L+SFI+AVP  QR
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT 120
           PALFQSLL+EACGRTVNPV+GA+G+L +GNW++CQ A ETVL GG LRPIP +   G   
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGF 120

Query: 121 RNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAGRA--KNHTLENRRSLDS 180
                 +    +++ T    NLQ   ST  +       + +  R+   + +   R+ L S
Sbjct: 121 AGFPSPTSEEASEICTEM-LNLQQNDSTDRNIYHHSRFSSSRSRSTMDSSSPTKRKRLSS 180

[Close]

BLAST of Carg21784 vs. TAIR 10
Match: AT1G67100.1 (LOB domain-containing protein 40 )

HSP 1 Score: 152.5 bits (384), Expect = 3.6e-37
Identity = 68/110 (61.82%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60
           MSC+GCRVLRKGC+E C +R  L WI S E+QANAT+FLAKF+GR+ L++ +   P H R
Sbjct: 3   MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLR 62

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPI 111
           PA+F+SLL+EACGR VNP+ G+VGLL SGNWH+CQ A E V+ G  + PI
Sbjct: 63  PAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPI 112

[Close]

BLAST of Carg21784 vs. TAIR 10
Match: AT3G02550.1 (LOB domain-containing protein 41 )

HSP 1 Score: 149.4 bits (376), Expect = 3.0e-36
Identity = 69/110 (62.73%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60
           MSC+GCRVLRKGC+E C +R  L WI SPEAQANAT+FLAKF+GR+ L++ I A P+H R
Sbjct: 3   MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLR 62

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPI 111
           P +F+SLL EACGR VNP+ G+VGLL SGNW +CQ A E V+ G  ++ I
Sbjct: 63  PGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEI 112

The following BLAST results are available for this feature:

BLAST of Carg21784 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024296.1	3.5e-111	100.00	LOB domain-containing protein 38, partial [Cucurbita argyrosperma subsp. argyros...	[more]
KAG6591416.1	6.0e-111	99.50	LOB domain-containing protein 38, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022936853.1	2.5e-109	99.01	LOB domain-containing protein 38-like [Cucurbita moschata]	[more]
XP_023535944.1	3.6e-108	97.52	LOB domain-containing protein 39-like [Cucurbita pepo subsp. pepo]	[more]
XP_022977110.1	2.5e-101	93.56	LOB domain-containing protein 39-like [Cucurbita maxima] >XP_022977111.1 LOB dom...	[more]

BLAST of Carg21784 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SN23	1.1e-43	65.65	LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 S...	[more]
Q9SZE8	2.5e-43	44.17	LOB domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=LBD39 PE=2 S...	[more]
Q9FN11	3.6e-42	49.45	LOB domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=LBD37 PE=2 S...	[more]
Q9ZW96	5.0e-36	61.82	LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 S...	[more]
Q9M886	4.2e-35	62.73	LOB domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=LBD41 PE=2 S...	[more]

BLAST of Carg21784 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEE1	1.2e-109	99.01	LOB domain-containing protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443...	[more]
A0A6J1IIW5	1.2e-101	93.56	LOB domain-containing protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC11147727...	[more]
A0A5A7VDI5	6.7e-92	82.44	LOB domain-containing protein 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BVG9	6.7e-92	82.44	LOB domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LOC103493596 PE...	[more]
A0A0A0L3S5	4.3e-91	83.09	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G642430 PE=3 SV...	[more]

BLAST of Carg21784 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49940.1	7.9e-45	65.65	LOB domain-containing protein 38	[more]
AT4G37540.1	1.8e-44	44.17	LOB domain-containing protein 39	[more]
AT5G67420.1	2.5e-43	49.45	LOB domain-containing protein 37	[more]
AT1G67100.1	3.6e-37	61.82	LOB domain-containing protein 40	[more]
AT3G02550.1	3.0e-36	62.73	LOB domain-containing protein 41	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 2..101 e-value: 1.6E-24 score: 86.3
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 1..107 score: 17.578165
None	No IPR available	PANTHER	PTHR31304	LOB DOMAIN-CONTAINING PROTEIN 38	coord: 1..202
None	No IPR available	PANTHER	PTHR31304:SF38	LOB DOMAIN-CONTAINING PROTEIN 39-LIKE	coord: 1..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21784-RA	Carg21784-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression