Carg21575 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21575
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Homologous-pairing protein 2 homolog
Location	Carg_Chr18: 10154588 .. 10156341 (-)
RNA-Seq Expression	Carg21575
Synteny	Carg21575

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGCACAACGCAAAATTTCCCGCCCATTTCTTCGCACTTCACCGATCAATGGCTCCCAAATTCGACGGCGCAGAAGGTAAAGGCTCACAATCGATCTTTTGAATTTTTGTCAATATGATTTCGCTATTGTAATTTTGGTTTTCATTTTGGATTTATGAACGTCTTCAACGTAGAGATTGAATCGTTTTATTCTGATTTCCTCCATTTCTAAAATTGGCAGCGATCGTACTCAACTTCGTAAATGAGGTATTTGTTTCATCACTGTGCTTCACTGATTTCTTTGTTCATCCATTAATTGTCTGCATTTCGCCGATTTACTGGTTTAATTTCTATTCCCCAAGCGTGTGTTAGTTTCGTAAATGAGGTATTTGTTTCATCACTGTGCTTCACTGATTTCTTTGTTCATCCATTAACTGTCTGCATTTCGCCGATTTACTGGTTTAATTTCTATTCTCCAAGCGTGTGTTAGTTTGATTTTCCCCCGTCTCTGCTTATCGCGGTGAAGTTCGCAGGCTTTTACGATATGTTCTACTTATATCTTCCTGTTGTTTAGTTGTAACGAAACGCTAATTTGCACATGGAAGAACTTATCTGTCTTCGTCGTTTGTGTGCTGGCTTAATAGGCAGAACACATGTGATTTTCTCAAGGTGCGATTTGTTTCGATAGACTTACCATTCCCCTGTCGAGTGCGTTTGGAATTGCACTTCACTATGAAACTCTCGTTCAGTGCTACTATCGTCTCTTATTTTTTGGAGTGTTTTTTTAGCTTTTCTGTTTATTGACATTTGGCGCATTTTTGTTCTGTTCAGCAAAATCGTCCACTGAACTCTCAAAACGTTGCTGATTGCTTACAAAAGTTCAACCTCAAGAAGACGGCGGTGCAAAAGGCACTGGATGCTCTTGCCGATAGTGGAAAGATTTCTTTCAAGGAATATGGCAAACAGAAGATATATCTCGCCCGGCAAGACCAATTCAATATCCCAAACAGTGAGGAACTTACTCAGATGAAGGAATCAAACGCCACATTGCAGAAAAATCTACACGAGCAGAAAAAAGCTATTAGCCAAGTTGAAGAAGGTAATCCCACTCGTGAATTTCAAAGAATTCTTCAATAATGTAAATCTTATAGATTACTTGAGCCTTTCCAATTACGGTAAGAACATGAAAATGATGTTGCCATGAACTTTTGCAACAGAAATACGAACTTTGCAGTCAAATTTAACGCTGGAACAGATGCGGGAAAAAGAAGCCAGGCTCAGAAAGGAGGTAGATAGATGCTAAATGAGATAGTTGTAACTTTACTTTGTTCAGATAAGTGATTATGTTACGCCCTACCCTCTTTATCTGTTATTAAGGTTTCAAAACACTTCTTTTTTGACAAACGTTTGTCAGGTTAAGGAATTGGAAGACAAACTGGAAATATTGCGCGAAGGTGTTACACTGGTGAAGCCAGAAGACCGCAAAGCAATTGAGCATATATACTCTGAGAAATTAAGCCAGTGGCGAAGGAGAAAAAGAATGTTCAAAGATCTATGGGATACCATCACCGAGAACTCACCTAAGGATCTAAAAGAATTCAAGGTTCTATCATGTCATTTTTCTCTGCCTGTTTTTACTCAGTTGTTTGAATTAAATCATTTGGATTCTTGCAGGAAGAACTTGGCATTGAATACGATGAAGATGTAGGTGTAAATTTGCAGTCATTCACCGACATGTTACCACAAACTCGAAAACGACCCAGGGGAAGGTGA

mRNA sequence

GAAAGCACAACGCAAAATTTCCCGCCCATTTCTTCGCACTTCACCGATCAATGGCTCCCAAATTCGACGGCGCAGAAGCGATCGTACTCAACTTCGTAAATGAGCAAAATCGTCCACTGAACTCTCAAAACGTTGCTGATTGCTTACAAAAGTTCAACCTCAAGAAGACGGCGGTGCAAAAGGCACTGGATGCTCTTGCCGATAGTGGAAAGATTTCTTTCAAGGAATATGGCAAACAGAAGATATATCTCGCCCGGCAAGACCAATTCAATATCCCAAACAGTGAGGAACTTACTCAGATGAAGGAATCAAACGCCACATTGCAGAAAAATCTACACGAGCAGAAAAAAGCTATTAGCCAAGTTGAAGAAGAAATACGAACTTTGCAGTCAAATTTAACGCTGGAACAGATGCGGGAAAAAGAAGCCAGGCTCAGAAAGGAGGTTAAGGAATTGGAAGACAAACTGGAAATATTGCGCGAAGGTGTTACACTGGTGAAGCCAGAAGACCGCAAAGCAATTGAGCATATATACTCTGAGAAATTAAGCCAGTGGCGAAGGAGAAAAAGAATGTTCAAAGATCTATGGGATACCATCACCGAGAACTCACCTAAGGATCTAAAAGAATTCAAGGAAGAACTTGGCATTGAATACGATGAAGATGTAGGTGTAAATTTGCAGTCATTCACCGACATGTTACCACAAACTCGAAAACGACCCAGGGGAAGGTGA

Coding sequence (CDS)

ATGGCTCCCAAATTCGACGGCGCAGAAGCGATCGTACTCAACTTCGTAAATGAGCAAAATCGTCCACTGAACTCTCAAAACGTTGCTGATTGCTTACAAAAGTTCAACCTCAAGAAGACGGCGGTGCAAAAGGCACTGGATGCTCTTGCCGATAGTGGAAAGATTTCTTTCAAGGAATATGGCAAACAGAAGATATATCTCGCCCGGCAAGACCAATTCAATATCCCAAACAGTGAGGAACTTACTCAGATGAAGGAATCAAACGCCACATTGCAGAAAAATCTACACGAGCAGAAAAAAGCTATTAGCCAAGTTGAAGAAGAAATACGAACTTTGCAGTCAAATTTAACGCTGGAACAGATGCGGGAAAAAGAAGCCAGGCTCAGAAAGGAGGTTAAGGAATTGGAAGACAAACTGGAAATATTGCGCGAAGGTGTTACACTGGTGAAGCCAGAAGACCGCAAAGCAATTGAGCATATATACTCTGAGAAATTAAGCCAGTGGCGAAGGAGAAAAAGAATGTTCAAAGATCTATGGGATACCATCACCGAGAACTCACCTAAGGATCTAAAAGAATTCAAGGAAGAACTTGGCATTGAATACGATGAAGATGTAGGTGTAAATTTGCAGTCATTCACCGACATGTTACCACAAACTCGAAAACGACCCAGGGGAAGGTGA

Protein sequence

MAPKFDGAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEYGKQKIYLARQDQFNIPNSEELTQMKESNATLQKNLHEQKKAISQVEEEIRTLQSNLTLEQMREKEARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWDTITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR

Homology

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BLAST of Carg21575 vs. NCBI nr
Match: KAG6573980.1 (Homologous-pairing protein 2-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013037.1 Homologous-pairing protein 2-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 432.2 bits (1110), Expect = 2.8e-117
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MAPKFDGAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPKFDGAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY
Sbjct: 1   MAPKFDGAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60

Query: 61  GKQKIYLARQDQFNIPNSEELTQMKESNATLQKNLHEQKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIYLARQDQFNIPNSEELTQMKESNATLQKNLHEQKKAISQVEEEIRTLQSNLTLEQ
Sbjct: 61  GKQKIYLARQDQFNIPNSEELTQMKESNATLQKNLHEQKKAISQVEEEIRTLQSNLTLEQ 120

Query: 121 MREKEARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180
           MREKEARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD
Sbjct: 121 MREKEARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180

Query: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 227
           TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR
Sbjct: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 226

[Close]

BLAST of Carg21575 vs. NCBI nr
Match: XP_023541752.1 (homologous-pairing protein 2 homolog isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 424.5 bits (1090), Expect = 5.8e-115
Identity = 221/226 (97.79%), Postives = 224/226 (99.12%), Query Frame = 0


Query: 1   MAPKFDGAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPKFDGAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDAL DSGKISFKEY
Sbjct: 1   MAPKFDGAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALVDSGKISFKEY 60

Query: 61  GKQKIYLARQDQFNIPNSEELTQMKESNATLQKNLHEQKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIYLARQDQF IPNSEELTQMKESN+TLQ+NLHEQKKAISQVEE+IRTLQSNLTLEQ
Sbjct: 61  GKQKIYLARQDQFKIPNSEELTQMKESNSTLQQNLHEQKKAISQVEEDIRTLQSNLTLEQ 120

Query: 121 MREKEARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180
           MREKEARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD
Sbjct: 121 MREKEARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180

Query: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 227
           TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR
Sbjct: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 226

[Close]

BLAST of Carg21575 vs. NCBI nr
Match: XP_023541751.1 (homologous-pairing protein 2 homolog isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 424.5 bits (1090), Expect = 5.8e-115
Identity = 221/226 (97.79%), Postives = 224/226 (99.12%), Query Frame = 0


Query: 1   MAPKFDGAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPKFDGAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDAL DSGKISFKEY
Sbjct: 1   MAPKFDGAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALVDSGKISFKEY 60

Query: 61  GKQKIYLARQDQFNIPNSEELTQMKESNATLQKNLHEQKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIYLARQDQF IPNSEELTQMKESN+TLQ+NLHEQKKAISQVEE+IRTLQSNLTLEQ
Sbjct: 61  GKQKIYLARQDQFKIPNSEELTQMKESNSTLQQNLHEQKKAISQVEEDIRTLQSNLTLEQ 120

Query: 121 MREKEARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180
           MREKEARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD
Sbjct: 121 MREKEARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180

Query: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 227
           TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR
Sbjct: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 226

[Close]

BLAST of Carg21575 vs. NCBI nr
Match: XP_022945821.1 (homologous-pairing protein 2 homolog isoform X2 [Cucurbita moschata])

HSP 1 Score: 417.9 bits (1073), Expect = 5.5e-113
Identity = 219/226 (96.90%), Postives = 222/226 (98.23%), Query Frame = 0


Query: 1   MAPKFDGAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPK D AEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY
Sbjct: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60

Query: 61  GKQKIYLARQDQFNIPNSEELTQMKESNATLQKNLHEQKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIYLARQDQF IPNSEELTQMKESN+TLQ+NLHEQKKAISQVEEEIRTLQSNLTL+Q
Sbjct: 61  GKQKIYLARQDQFKIPNSEELTQMKESNSTLQQNLHEQKKAISQVEEEIRTLQSNLTLQQ 120

Query: 121 MREKEARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180
           MREKEARLRKEVKEL DKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD
Sbjct: 121 MREKEARLRKEVKELVDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180

Query: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 227
           TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR
Sbjct: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 226

[Close]

BLAST of Carg21575 vs. NCBI nr
Match: XP_022945822.1 (homologous-pairing protein 2 homolog isoform X3 [Cucurbita moschata])

HSP 1 Score: 417.9 bits (1073), Expect = 5.5e-113
Identity = 219/226 (96.90%), Postives = 222/226 (98.23%), Query Frame = 0


Query: 1   MAPKFDGAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPK D AEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY
Sbjct: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60

Query: 61  GKQKIYLARQDQFNIPNSEELTQMKESNATLQKNLHEQKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIYLARQDQF IPNSEELTQMKESN+TLQ+NLHEQKKAISQVEEEIRTLQSNLTL+Q
Sbjct: 61  GKQKIYLARQDQFKIPNSEELTQMKESNSTLQQNLHEQKKAISQVEEEIRTLQSNLTLQQ 120

Query: 121 MREKEARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180
           MREKEARLRKEVKEL DKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD
Sbjct: 121 MREKEARLRKEVKELVDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180

Query: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 227
           TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR
Sbjct: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 226

[Close]

BLAST of Carg21575 vs. ExPASy Swiss-Prot
Match: Q9FX64 (Homologous-pairing protein 2 homolog OS=Arabidopsis thaliana OX=3702 GN=HOP2 PE=1 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 8.0e-91
Identity = 164/226 (72.57%), Postives = 203/226 (89.82%), Query Frame = 0


Query: 1   MAPKFDGAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPK D  EAIVLNFVNEQN+PLN+QN AD LQKFNLKKTAVQKALD+LAD+GKI+FKEY
Sbjct: 1   MAPKSDNTEAIVLNFVNEQNKPLNTQNAADALQKFNLKKTAVQKALDSLADAGKITFKEY 60

Query: 61  GKQKIYLARQDQFNIPNSEELTQMKESNATLQKNLHEQKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIY+ARQDQF IPNSEEL QMKE NA LQ+ L E+KK IS VE EI++LQSNLTLE+
Sbjct: 61  GKQKIYIARQDQFEIPNSEELAQMKEDNAKLQEQLQEKKKTISDVESEIKSLQSNLTLEE 120

Query: 121 MREKEARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180
           ++EK+A+LRKEVKE+E+KL  LREG+TLV+PED+KA+E +Y++K++QWR+RKRMF+D+WD
Sbjct: 121 IQEKDAKLRKEVKEMEEKLVKLREGITLVRPEDKKAVEDMYADKINQWRKRKRMFRDIWD 180

Query: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 227
           T+TENSPKD+KE KEELGIEYDEDVG++ Q++ D++   +KRPRG+
Sbjct: 181 TVTENSPKDVKELKEELGIEYDEDVGLSFQAYADLIQHGKKRPRGQ 226

[Close]

BLAST of Carg21575 vs. ExPASy Swiss-Prot
Match: Q91ZY6 (Homologous-pairing protein 2 homolog OS=Rattus norvegicus OX=10116 GN=Psmc3ip PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 8.7e-29
Identity = 82/204 (40.20%), Postives = 117/204 (57.35%), Query Frame = 0


Query: 7   GAEAIVLNFVNEQNRPLNSQNVADCLQK-FNLKKTAVQKALDALADSGKISFKEYGKQKI 66
           GA  IVL ++ EQNRP ++Q+V   LQK   L K AV KALD LA  GKI  K YGKQKI
Sbjct: 11  GAPGIVLRYLQEQNRPYSAQDVFGNLQKEHGLGKAAVVKALDQLAQQGKIKEKTYGKQKI 70

Query: 67  YLARQDQFNIPNSEELTQMKESNATLQKNLHEQKKAISQVEEEIRTLQSNLTLEQMREKE 126
           Y A QDQF+  +  +L  +  S   L   +   +++   +E E++ L S LT  +M+ + 
Sbjct: 71  YFADQDQFDTVSDADLHSLDASIMALTAKVQGLQQSCRHMEAELKELTSALTTPEMQTEI 130

Query: 127 ARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWDTITEN 186
             L+KE     ++L+ ++     V PE+++ +     +   +WR+RKRM  +L D I E 
Sbjct: 131 QELKKECARYTERLKNIKAATNHVTPEEKEKVYRERQKYCKEWRKRKRMTTELCDAILEG 190

Query: 187 SPKDLKEFKEELGIEYDEDVGVNL 210
            PK  K+F EE+GIE DED  V L
Sbjct: 191 YPKSKKQFFEEVGIETDEDHNVTL 214

[Close]

BLAST of Carg21575 vs. ExPASy Swiss-Prot
Match: O35047 (Homologous-pairing protein 2 homolog OS=Mus musculus OX=10090 GN=Psmc3ip PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.5e-28
Identity = 80/204 (39.22%), Postives = 119/204 (58.33%), Query Frame = 0


Query: 7   GAEAIVLNFVNEQNRPLNSQNVADCLQK-FNLKKTAVQKALDALADSGKISFKEYGKQKI 66
           GA  I+L ++ EQNRP ++Q+V   LQK   L K AV KALD LA  GKI  K YGKQKI
Sbjct: 11  GAPGIILRYLQEQNRPYSAQDVFGNLQKEHGLGKAAVVKALDQLAQEGKIKEKTYGKQKI 70

Query: 67  YLARQDQFNIPNSEELTQMKESNATLQKNLHEQKKAISQVEEEIRTLQSNLTLEQMREKE 126
           Y A Q+QF+  +  +L  +  S   L   +   +++   +E E++ L S LT  +M+++ 
Sbjct: 71  YFADQNQFDTVSDADLHGLDASIVALTAKVQSLQQSCRHMEAELKELTSALTTPEMQKEI 130

Query: 127 ARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWDTITEN 186
             L+KE  +  ++L+ ++     V PE+++ +     +   +WR+RKRM  +L D I E 
Sbjct: 131 QELKKECAQYTERLKNIKAATNHVTPEEKEKVYRDRQKYCKEWRKRKRMTTELCDAILEG 190

Query: 187 SPKDLKEFKEELGIEYDEDVGVNL 210
            PK  K+F EE+GIE DED  V L
Sbjct: 191 YPKSKKQFFEEVGIETDEDHNVLL 214

[Close]

BLAST of Carg21575 vs. ExPASy Swiss-Prot
Match: Q63ZL2 (Homologous-pairing protein 2 homolog OS=Xenopus laevis OX=8355 GN=psmc3ip PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.5e-28
Identity = 79/206 (38.35%), Postives = 121/206 (58.74%), Query Frame = 0


Query: 8   AEAIVLNFVNEQNRPLNSQNVADCLQK-FNLKKTAVQKALDALADSGKISFKEYGKQKIY 67
           A +I+L ++N+QNRP ++Q+V   LQ+   L KTAV K ++ LA  GKI  K YGKQKIY
Sbjct: 9   ASSIILKYLNDQNRPYSTQDVFSNLQRDHGLGKTAVVKTMELLAQKGKIKEKVYGKQKIY 68

Query: 68  LARQDQFNIPNSEELTQMKESNATLQKNLHEQKKAISQVEEEIRTLQSNLTLEQMREKEA 127
            A Q+QF   +  EL  +      L   L   +++  Q+E E++ L S+LT E+M ++ +
Sbjct: 69  FADQEQFPSVSDSELKDLDAQVTELSSKLQSSQQSCRQLESELKDLTSSLTTEEMLKEVS 128

Query: 128 RLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEK---LSQWRRRKRMFKDLWDTIT 187
            L++E    E KL  ++     V P ++   E +Y E+     +W++RKRM  D++D I 
Sbjct: 129 CLKEECDRHEHKLTNIKSATNHVTPAEK---EKVYGERKHFCKEWKKRKRMATDIFDAIL 188

Query: 188 ENSPKDLKEFKEELGIEYDEDVGVNL 210
           E  PK  K+F EE+G+E DED  V +
Sbjct: 189 EGYPKSKKQFFEEVGVETDEDCNVTV 211

[Close]

BLAST of Carg21575 vs. ExPASy Swiss-Prot
Match: Q9P2W1 (Homologous-pairing protein 2 homolog OS=Homo sapiens OX=9606 GN=PSMC3IP PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.8e-27
Identity = 77/204 (37.75%), Postives = 116/204 (56.86%), Query Frame = 0


Query: 7   GAEAIVLNFVNEQNRPLNSQNVADCLQK-FNLKKTAVQKALDALADSGKISFKEYGKQKI 66
           GA  I+L ++ EQNRP +SQ+V   LQ+   L K  V K L+ LA  GKI  K YGKQKI
Sbjct: 11  GAAGILLRYLQEQNRPYSSQDVFGNLQREHGLGKAVVVKTLEQLAQQGKIKEKMYGKQKI 70

Query: 67  YLARQDQFNIPNSEELTQMKESNATLQKNLHEQKKAISQVEEEIRTLQSNLTLEQMREKE 126
           Y A QDQF++ +  +L  +      L   +   +++   +E E++ L S LT  +M+++ 
Sbjct: 71  YFADQDQFDMVSDADLQVLDGKIVALTAKVQSLQQSCRYMEAELKELSSALTTPEMQKEI 130

Query: 127 ARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWDTITEN 186
             L+KE     ++L+ ++     V PE+++ +     +   +WR+RKRM  +L D I E 
Sbjct: 131 QELKKECAGYRERLKNIKAATNHVTPEEKEQVYRERQKYCKEWRKRKRMATELSDAILEG 190

Query: 187 SPKDLKEFKEELGIEYDEDVGVNL 210
            PK  K+F EE+GIE DED  V L
Sbjct: 191 YPKSKKQFFEEVGIETDEDYNVTL 214

[Close]

BLAST of Carg21575 vs. ExPASy TrEMBL
Match: A0A6J1G1Y1 (Homologous-pairing protein 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111449951 PE=3 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 2.6e-113
Identity = 219/226 (96.90%), Postives = 222/226 (98.23%), Query Frame = 0


Query: 1   MAPKFDGAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPK D AEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY
Sbjct: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60

Query: 61  GKQKIYLARQDQFNIPNSEELTQMKESNATLQKNLHEQKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIYLARQDQF IPNSEELTQMKESN+TLQ+NLHEQKKAISQVEEEIRTLQSNLTL+Q
Sbjct: 61  GKQKIYLARQDQFKIPNSEELTQMKESNSTLQQNLHEQKKAISQVEEEIRTLQSNLTLQQ 120

Query: 121 MREKEARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180
           MREKEARLRKEVKEL DKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD
Sbjct: 121 MREKEARLRKEVKELVDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180

Query: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 227
           TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR
Sbjct: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 226

[Close]

BLAST of Carg21575 vs. ExPASy TrEMBL
Match: A0A6J1G1Z5 (Homologous-pairing protein 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111449951 PE=3 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 2.6e-113
Identity = 219/226 (96.90%), Postives = 222/226 (98.23%), Query Frame = 0


Query: 1   MAPKFDGAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPK D AEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY
Sbjct: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60

Query: 61  GKQKIYLARQDQFNIPNSEELTQMKESNATLQKNLHEQKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIYLARQDQF IPNSEELTQMKESN+TLQ+NLHEQKKAISQVEEEIRTLQSNLTL+Q
Sbjct: 61  GKQKIYLARQDQFKIPNSEELTQMKESNSTLQQNLHEQKKAISQVEEEIRTLQSNLTLQQ 120

Query: 121 MREKEARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180
           MREKEARLRKEVKEL DKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD
Sbjct: 121 MREKEARLRKEVKELVDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180

Query: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 227
           TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR
Sbjct: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 226

[Close]

BLAST of Carg21575 vs. ExPASy TrEMBL
Match: A0A6J1HWT5 (Homologous-pairing protein 2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111467563 PE=3 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 2.2e-112
Identity = 217/226 (96.02%), Postives = 221/226 (97.79%), Query Frame = 0


Query: 1   MAPKFDGAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPKFD AEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGK+SFKEY
Sbjct: 1   MAPKFDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKVSFKEY 60

Query: 61  GKQKIYLARQDQFNIPNSEELTQMKESNATLQKNLHEQKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIYLARQDQF IPNSE LTQMKESNATLQKNLH+QKKAISQVEEEI+TLQSNLTLEQ
Sbjct: 61  GKQKIYLARQDQFKIPNSEGLTQMKESNATLQKNLHKQKKAISQVEEEIQTLQSNLTLEQ 120

Query: 121 MREKEARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180
           MREKEARLRKEVKELEDKLEILR GVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD
Sbjct: 121 MREKEARLRKEVKELEDKLEILRGGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180

Query: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 227
           TI ENSPKDLKEFKEELGIEYDEDVGVNLQSFT+MLPQTRKRPRGR
Sbjct: 181 TINENSPKDLKEFKEELGIEYDEDVGVNLQSFTNMLPQTRKRPRGR 226

[Close]

BLAST of Carg21575 vs. ExPASy TrEMBL
Match: A0A6J1HZ82 (Homologous-pairing protein 2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111467563 PE=3 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 2.2e-112
Identity = 217/226 (96.02%), Postives = 221/226 (97.79%), Query Frame = 0


Query: 1   MAPKFDGAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPKFD AEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGK+SFKEY
Sbjct: 1   MAPKFDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKVSFKEY 60

Query: 61  GKQKIYLARQDQFNIPNSEELTQMKESNATLQKNLHEQKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIYLARQDQF IPNSE LTQMKESNATLQKNLH+QKKAISQVEEEI+TLQSNLTLEQ
Sbjct: 61  GKQKIYLARQDQFKIPNSEGLTQMKESNATLQKNLHKQKKAISQVEEEIQTLQSNLTLEQ 120

Query: 121 MREKEARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180
           MREKEARLRKEVKELEDKLEILR GVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD
Sbjct: 121 MREKEARLRKEVKELEDKLEILRGGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180

Query: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 227
           TI ENSPKDLKEFKEELGIEYDEDVGVNLQSFT+MLPQTRKRPRGR
Sbjct: 181 TINENSPKDLKEFKEELGIEYDEDVGVNLQSFTNMLPQTRKRPRGR 226

[Close]

BLAST of Carg21575 vs. ExPASy TrEMBL
Match: A0A6J1G226 (Homologous-pairing protein 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111449951 PE=3 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 7.7e-105
Identity = 206/217 (94.93%), Postives = 210/217 (96.77%), Query Frame = 0


Query: 10  AIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEYGKQKIYLAR 69
           +I L F   QNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEYGKQKIYLAR
Sbjct: 15  SIDLPFPCRQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEYGKQKIYLAR 74

Query: 70  QDQFNIPNSEELTQMKESNATLQKNLHEQKKAISQVEEEIRTLQSNLTLEQMREKEARLR 129
           QDQF IPNSEELTQMKESN+TLQ+NLHEQKKAISQVEEEIRTLQSNLTL+QMREKEARLR
Sbjct: 75  QDQFKIPNSEELTQMKESNSTLQQNLHEQKKAISQVEEEIRTLQSNLTLQQMREKEARLR 134

Query: 130 KEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWDTITENSPKD 189
           KEVKEL DKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWDTITENSPKD
Sbjct: 135 KEVKELVDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWDTITENSPKD 194

Query: 190 LKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 227
           LKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR
Sbjct: 195 LKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 231

[Close]

BLAST of Carg21575 vs. TAIR 10
Match: AT1G13330.1 (Arabidopsis Hop2 homolog )

HSP 1 Score: 334.7 bits (857), Expect = 5.7e-92
Identity = 164/226 (72.57%), Postives = 203/226 (89.82%), Query Frame = 0


Query: 1   MAPKFDGAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPK D  EAIVLNFVNEQN+PLN+QN AD LQKFNLKKTAVQKALD+LAD+GKI+FKEY
Sbjct: 1   MAPKSDNTEAIVLNFVNEQNKPLNTQNAADALQKFNLKKTAVQKALDSLADAGKITFKEY 60

Query: 61  GKQKIYLARQDQFNIPNSEELTQMKESNATLQKNLHEQKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIY+ARQDQF IPNSEEL QMKE NA LQ+ L E+KK IS VE EI++LQSNLTLE+
Sbjct: 61  GKQKIYIARQDQFEIPNSEELAQMKEDNAKLQEQLQEKKKTISDVESEIKSLQSNLTLEE 120

Query: 121 MREKEARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180
           ++EK+A+LRKEVKE+E+KL  LREG+TLV+PED+KA+E +Y++K++QWR+RKRMF+D+WD
Sbjct: 121 IQEKDAKLRKEVKEMEEKLVKLREGITLVRPEDKKAVEDMYADKINQWRKRKRMFRDIWD 180

Query: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 227
           T+TENSPKD+KE KEELGIEYDEDVG++ Q++ D++   +KRPRG+
Sbjct: 181 TVTENSPKDVKELKEELGIEYDEDVGLSFQAYADLIQHGKKRPRGQ 226

The following BLAST results are available for this feature:

BLAST of Carg21575 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573980.1	2.8e-117	100.00	Homologous-pairing protein 2-like protein, partial [Cucurbita argyrosperma subsp...	[more]
XP_023541752.1	5.8e-115	97.79	homologous-pairing protein 2 homolog isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_023541751.1	5.8e-115	97.79	homologous-pairing protein 2 homolog isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022945821.1	5.5e-113	96.90	homologous-pairing protein 2 homolog isoform X2 [Cucurbita moschata]	[more]
XP_022945822.1	5.5e-113	96.90	homologous-pairing protein 2 homolog isoform X3 [Cucurbita moschata]	[more]

BLAST of Carg21575 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FX64	8.0e-91	72.57	Homologous-pairing protein 2 homolog OS=Arabidopsis thaliana OX=3702 GN=HOP2 PE=...	[more]
Q91ZY6	8.7e-29	40.20	Homologous-pairing protein 2 homolog OS=Rattus norvegicus OX=10116 GN=Psmc3ip PE...	[more]
O35047	2.5e-28	39.22	Homologous-pairing protein 2 homolog OS=Mus musculus OX=10090 GN=Psmc3ip PE=1 SV...	[more]
Q63ZL2	2.5e-28	38.35	Homologous-pairing protein 2 homolog OS=Xenopus laevis OX=8355 GN=psmc3ip PE=2 S...	[more]
Q9P2W1	4.8e-27	37.75	Homologous-pairing protein 2 homolog OS=Homo sapiens OX=9606 GN=PSMC3IP PE=1 SV=...	[more]

BLAST of Carg21575 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G1Y1	2.6e-113	96.90	Homologous-pairing protein 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114499...	[more]
A0A6J1G1Z5	2.6e-113	96.90	Homologous-pairing protein 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114499...	[more]
A0A6J1HWT5	2.2e-112	96.02	Homologous-pairing protein 2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111467563...	[more]
A0A6J1HZ82	2.2e-112	96.02	Homologous-pairing protein 2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111467563...	[more]
A0A6J1G226	7.7e-105	94.93	Homologous-pairing protein 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114499...	[more]

BLAST of Carg21575 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13330.1	5.7e-92	72.57	Arabidopsis Hop2 homolog	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 81..145
IPR010776	Homologous-pairing protein 2, winged helix domain	PFAM	PF07106	TBPIP	coord: 8..68 e-value: 1.2E-25 score: 89.2
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 2..78 e-value: 5.6E-24 score: 85.9
IPR040661	Leucine zipper with capping helix domain	PFAM	PF18517	LZ3wCH	coord: 149..206 e-value: 2.7E-17 score: 62.6
IPR040461	Homologous-pairing protein 2	PANTHER	PTHR15938	TBP-1 INTERACTING PROTEIN	coord: 8..221
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 3..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21575-RA	Carg21575-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007129	homologous chromosome pairing at meiosis
biological_process	GO:0000709	meiotic joint molecule formation
biological_process	GO:0010774	meiotic strand invasion involved in reciprocal meiotic recombination
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0007131	reciprocal meiotic recombination
cellular_component	GO:0000794	condensed nuclear chromosome
cellular_component	GO:0120231	DNA recombinase auxiliary factor complex
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0120230	recombinase activator activity