Carg21474 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTAAGAGCTCCATCTCAAATCCTCTGAAAATGGTTGTATCTGGCGTTATTCTTGATCTGGATGGCACACTTCTACATACAGGTCCTCTTGTGTTCTTCACAATGTAGATCAACATTTATAGTCTTGTTTCTCTCAGCAACTTTATTTTGAGGCATTGAAATTGAATTTCTCTGTTTGTGAAAAATGTGATATCTATCTGTCAGTCTGGGGACCTGGATCCCCTATTGTGACTTGGTATTCTATTGTAAATATATCAACCAACTTAGTTACCTTCTAGCGTCCTTGTATTTCCCTTTTTCTCCACTGCTGAATCTCTTCCTCCCTACCACCATATCTTAATAGATGGCATAGTGAGTGACGTTCTAAAATCCTTTTTGGACAAGTATGGAAAGCAATGGGATGGAAGGGAAGCCCTAAGACTTACTGGGAAGACGCCATACGAGTCTGCAGCTGTTATTATTGAAGATTACGAGCTTCCTTGCACATCAACTGAATTGATGTCACAAGTTTCCCCAATGTTTGAGGAAAGGTAAACAATTAGTGTTCTTTCCTATCTACGCTTAAATGCATGTAACCGTATCATCTTGGTTATAAGCTTTTCAACCGTTTAAGGTCAATAGTGAAGTTTCTCGGTTTTTACAACATGTTGCAAGTTGTTATAGTGATTGATATACTATGGTAGTTAAAAATCGAAGACACTGCATGCTCAATCCAAATTCATCTCGATTTTTCTAGGTTGCAACCTTTGGAAATCTGTAATATAATTATAAACTGCTGGCACCTTACATATTTTGTTGTTTATGTTACCTCAACAACGTGCTGATCTTGGATGACTGGTTTTTAGCTTTTCAAAAGTTATTGGAACTGGATATTTCAAGTCAATTTGGTTTTGGTTATGAACATATGCACATTATCAAATAATTATTTCTTATACGACCTTCAAATTTACTTTTGATATTTCTTCCTGGTTTTTATTGTATTGGAAAACATTATTTCGTTTCATCGTTCGGATCATGGCAATCATTCTTTTCCAAGTACAAGATTTCAATTTCAGATTGTGTATTGTAAAGGGTATTATTAGTTGGAAGTGTTCAAATAATGGGATTTCTTGGTGAGTTGCACACACCATGCAGTATGCATTTTATTGTTCTATTGGATTGTTGATAGCACAAATGCAATGCGTCTACGATATAATCCTTGCCATAACAGAACACTTTTTGGAATTTCCACTACAGATGGTGCAACATTAAAGCACTTCCAGGAGCAAACCGGTTGATTAAACATTTCACTGGTCACAGAGTGCCAATGGCATTAGCTTCAAACTCAAGTAGGGAAAACATAGAGACCAAAATTTCTTTTCATCAGGGTATGGTTTCTAAAAGACCATAACATATCCATTTACTTGTTCTGGTTGTTGCTACTATTTATTTATTTAGCTGCTTGATTTTATTATTGTATAGGCTGGAAAGACTCATTCTCTGTGATAATCGGTAGCGATGAAGTTACAATGGCCAAACCATCTCCTGAAATGTAAAATGCAACTATTTTCTGTCGGTTCTTTCTAACTTGGTTTTCTTTTGCAAGTAAACCATTAAGAACTAACAATGCCTCACTGTTTTCAATGGCTGGTTGCTCTTCATAAATTTGTGAAGTATTTTCATTTCAAGTAATCCAATTATGCGTTCTAACAATGCGTTCATTGATAAAGATTCCTTGAAGCAGCAAAAAGGTTAAATCTCGAACCCTCGAGGTGCCTCGTAATTGAGGATTCCGTGTAAGTATCTGTATTTGAACTTTAATTTTCAAGAATAAAAAATAAAAAAACTAAATGGTTATCAAATGAACGTTTTGATTCATCGTACTCTTCTTACTCAACATGCATACCAGTCCAGGTGTTGCAGCCGGTAAGGCTGCTGGGATGAAGGTGGTTGCTGTACCATCCCTTCCGAAGAAGACTAACCTCTACTCTTCAGCGGATGAGGTGATCAATTCACTGCTCGACTTTCAGCCTGAGAAATGGGGCCTACCTCCATTTGAAGATTGTACATACCACAACCCTTTTTAACTACCTCAATTCTCAACCTTTCCAGTTGAGTTTCTTTATGCATAAATCTATTTGTCACAGTTCTTGACTTTAAACTATAGGGGTAGAGAACACCTTACCAATTAATCCTATGTACATTGGAGGTCCCGTCGTCAAGGGATATGGGCGTGGCTCGAAAGTTCTTGGGATTCCTACAGGTGTGTGCGAATTCAATAGACCGTTCTTATTTCCATTAGGCTGGTCGTTTAAACCTTTATGTTATCTGATTCCTTGTTAATCTCATAGTCTAAATTCTGGTTTGGCAAACTCAATGTTATGAACTGTTCTTAATCTCGATATCTACAGTTGATCTCTTTCCATTATAATACTTACAAACTTGCTTTACTTTTCCCAGCGAATTTATCTACAGAAGGATATTCAGATGTCCTTTTAGAACATCCATCAGGCGTTTATTTCGGTTGGGCTGGTTTATCAACAAGAGGCATCTTTAAAATGGTCGCGAGCATCGGATGGAATCCATTTTTCGACAATGCAGAAAAGACTATCGTAAGTGTAGAATAGTTCAGAAATGTTAATGTTGGTTGCTGCATTCACTTTCTGGTTAATATTTGTATATTATGATCCAGGAACCATGGCTACTCCACGAGTTCCATGAAGATTTCTACGATGAGGACTTGAGACTTGTTCTAGTCGGATACATTCGGCCAGAGGTAATGCTTGCCAAACAACTAGCTTGTTCTTCTATCATGCTCGGTCACTCCATTGTTATCTCATCAATATTATCACTAATCAGGCCAACTTCCCAAACCTTGAGAGCCTAATAGCTAAGATTCACGAGGATGGAAGAATTGCAGAAAGAGCTCTTGATCTTCCACTGTACTCGAAGTATAGAGACGACCAATACCTGAAGCAGCATGATGCTTAGAGATGGCATGCTTTAGGAGTTCTATACGTTCTATTGCAAACTTTTGTGGCCTATTGTTTGTCATTTACTTCATAATTCTATGATCATGGAGGGAATTCTCATTTACATTTGGTTGTTTTTTCTATACTACAATCAATCTTAAAGTGTGTATTTGATCATTTGATCTTGAGAGTAACGATCGATATTAATGTTGGCATCTTTTGAT ATGATTAAGAGCTCCATCTCAAATCCTCTGAAAATGGTTGTATCTGGCGTTATTCTTGATCTGGATGGCACACTTCTACATACAGATGGCATAGTGAGTGACGTTCTAAAATCCTTTTTGGACAAGTATGGAAAGCAATGGGATGGAAGGGAAGCCCTAAGACTTACTGGGAAGACGCCATACGAGTCTGCAGCTGTTATTATTGAAGATTACGAGCTTCCTTGCACATCAACTGAATTGATGTCACAAGTTTCCCCAATGTTTGAGGAAAGATGGTGCAACATTAAAGCACTTCCAGGAGCAAACCGGTTGATTAAACATTTCACTGGTCACAGAGTGCCAATGGCATTAGCTTCAAACTCAAGTAGGGAAAACATAGAGACCAAAATTTCTTTTCATCAGGGCTGGAAAGACTCATTCTCTGTGATAATCGGTAGCGATGAAGTTACAATGGCCAAACCATCTCCTGAAATATTCCTTGAAGCAGCAAAAAGGTTAAATCTCGAACCCTCGAGGTGCCTCGTAATTGAGGATTCCGTGTAAGTATCTGTATTTGAACTTTAATTTTCAAGAATAAAAAATAAAAAAACTAAATGGTTATCAAATGAACGTTTTGATTCATCGTACTCTTCTTACTCAACATGCATACCAGTCCAGGTGTTGCAGCCGGTAAGGCTGCTGGGATGAAGGTGGTTGCTGTACCATCCCTTCCGAAGAAGACTAACCTCTACTCTTCAGCGGATGAGGTGATCAATTCACTGCTCGACTTTCAGCCTGAGAAATGGGGCCTACCTCCATTTGAAGATTGGGTAGAGAACACCTTACCAATTAATCCTATGTACATTGGAGGTCCCGTCGTCAAGGGATATGGGCGTGGCTCGAAAGTTCTTGGGATTCCTACAGCGAATTTATCTACAGAAGGATATTCAGATGTCCTTTTAGAACATCCATCAGGCGTTTATTTCGGTTGGGCTGGTTTATCAACAAGAGGCATCTTTAAAATGGTCGCGAGCATCGGATGGAATCCATTTTTCGACAATGCAGAAAAGACTATCGAACCATGGCTACTCCACGAGTTCCATGAAGATTTCTACGATGAGGACTTGAGACTTGTTCTAGTCGGATACATTCGGCCAGAGGCCAACTTCCCAAACCTTGAGAGCCTAATAGCTAAGATTCACGAGGATGGAAGAATTGCAGAAAGAGCTCTTGATCTTCCACTGTACTCGAAGTATAGAGACGACCAATACCTGAAGCAGCATGATGCTTAGAGATGGCATGCTTTAGGAGTTCTATACGTTCTATTGCAAACTTTTGTGGCCTATTGTTTGTCATTTACTTCATAATTCTATGATCATGGAGGGAATTCTCATTTACATTTGGTTGTTTTTTCTATACTACAATCAATCTTAAAGTGTGTATTTGATCATTTGATCTTGAGAGTAACGATCGATATTAATGTTGGCATCTTTTGAT ATGATTAAGAGCTCCATCTCAAATCCTCTGAAAATGGTTGTATCTGGCGTTATTCTTGATCTGGATGGCACACTTCTACATACAGATGGCATAGTGAGTGACGTTCTAAAATCCTTTTTGGACAAGTATGGAAAGCAATGGGATGGAAGGGAAGCCCTAAGACTTACTGGGAAGACGCCATACGAGTCTGCAGCTGTTATTATTGAAGATTACGAGCTTCCTTGCACATCAACTGAATTGATGTCACAAGTTTCCCCAATGTTTGAGGAAAGATGGTGCAACATTAAAGCACTTCCAGGAGCAAACCGGTTGATTAAACATTTCACTGGTCACAGAGTGCCAATGGCATTAGCTTCAAACTCAAGTAGGGAAAACATAGAGACCAAAATTTCTTTTCATCAGGGCTGGAAAGACTCATTCTCTGTGATAATCGGTAGCGATGAAGTTACAATGGCCAAACCATCTCCTGAAATATTCCTTGAAGCAGCAAAAAGGTTAAATCTCGAACCCTCGAGGTGCCTCGTAATTGAGGATTCCGTGTAA MIKSSISNPLKMVVSGVILDLDGTLLHTDGIVSDVLKSFLDKYGKQWDGREALRLTGKTPYESAAVIIEDYELPCTSTELMSQVSPMFEERWCNIKALPGANRLIKHFTGHRVPMALASNSSRENIETKISFHQGWKDSFSVIIGSDEVTMAKPSPEIFLEAAKRLNLEPSRCLVIEDSV Homology
BLAST of Carg21474 vs. NCBI nr
Match: KAG7019643.1 (Bifunctional riboflavin kinase/FMN phosphatase, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 362.5 bits (929), Expect = 2.2e-96 Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0
BLAST of Carg21474 vs. NCBI nr
Match: XP_022927266.1 (bifunctional riboflavin kinase/FMN phosphatase isoform X1 [Cucurbita moschata] >XP_022927267.1 bifunctional riboflavin kinase/FMN phosphatase isoform X1 [Cucurbita moschata] >XP_022927268.1 bifunctional riboflavin kinase/FMN phosphatase isoform X1 [Cucurbita moschata]) HSP 1 Score: 357.5 bits (916), Expect = 7.0e-95 Identity = 177/180 (98.33%), Postives = 178/180 (98.89%), Query Frame = 0
BLAST of Carg21474 vs. NCBI nr
Match: XP_023519876.1 (bifunctional riboflavin kinase/FMN phosphatase isoform X1 [Cucurbita pepo subsp. pepo] >XP_023519877.1 bifunctional riboflavin kinase/FMN phosphatase isoform X1 [Cucurbita pepo subsp. pepo] >XP_023519878.1 bifunctional riboflavin kinase/FMN phosphatase isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 357.1 bits (915), Expect = 9.1e-95 Identity = 177/180 (98.33%), Postives = 178/180 (98.89%), Query Frame = 0
BLAST of Carg21474 vs. NCBI nr
Match: XP_023000816.1 (bifunctional riboflavin kinase/FMN phosphatase isoform X1 [Cucurbita maxima] >XP_023000817.1 bifunctional riboflavin kinase/FMN phosphatase isoform X1 [Cucurbita maxima] >XP_023000818.1 bifunctional riboflavin kinase/FMN phosphatase isoform X1 [Cucurbita maxima]) HSP 1 Score: 346.7 bits (888), Expect = 1.2e-91 Identity = 171/180 (95.00%), Postives = 176/180 (97.78%), Query Frame = 0
BLAST of Carg21474 vs. NCBI nr
Match: KAG6584026.1 (Bifunctional riboflavin kinase/FMN phosphatase, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 342.8 bits (878), Expect = 1.8e-90 Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
BLAST of Carg21474 vs. ExPASy Swiss-Prot
Match: Q84MD8 (Bifunctional riboflavin kinase/FMN phosphatase OS=Arabidopsis thaliana OX=3702 GN=FHY PE=1 SV=1) HSP 1 Score: 239.2 bits (609), Expect = 3.6e-62 Identity = 112/176 (63.64%), Postives = 142/176 (80.68%), Query Frame = 0
BLAST of Carg21474 vs. ExPASy Swiss-Prot
Match: Q9D5U5 (Pseudouridine-5'-phosphatase OS=Mus musculus OX=10090 GN=Pudp PE=1 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 4.8e-22 Identity = 61/170 (35.88%), Postives = 93/170 (54.71%), Query Frame = 0
BLAST of Carg21474 vs. ExPASy Swiss-Prot
Match: Q08623 (Pseudouridine-5'-phosphatase OS=Homo sapiens OX=9606 GN=PUDP PE=1 SV=3) HSP 1 Score: 104.0 bits (258), Expect = 1.8e-21 Identity = 59/170 (34.71%), Postives = 96/170 (56.47%), Query Frame = 0
BLAST of Carg21474 vs. ExPASy Swiss-Prot
Match: Q94529 (Probable pseudouridine-5'-phosphatase OS=Drosophila melanogaster OX=7227 GN=Gs1l PE=2 SV=2) HSP 1 Score: 93.6 bits (231), Expect = 2.5e-18 Identity = 59/179 (32.96%), Postives = 94/179 (52.51%), Query Frame = 0
BLAST of Carg21474 vs. ExPASy Swiss-Prot
Match: P77475 (Fructose-1-phosphate phosphatase YqaB OS=Escherichia coli (strain K12) OX=83333 GN=yqaB PE=1 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 6.3e-14 Identity = 50/169 (29.59%), Postives = 88/169 (52.07%), Query Frame = 0
BLAST of Carg21474 vs. ExPASy TrEMBL
Match: A0A6J1EH72 (Riboflavin kinase OS=Cucurbita moschata OX=3662 GN=LOC111434161 PE=4 SV=1) HSP 1 Score: 357.5 bits (916), Expect = 3.4e-95 Identity = 177/180 (98.33%), Postives = 178/180 (98.89%), Query Frame = 0
BLAST of Carg21474 vs. ExPASy TrEMBL
Match: A0A6J1KEP7 (Riboflavin kinase OS=Cucurbita maxima OX=3661 GN=LOC111495153 PE=4 SV=1) HSP 1 Score: 346.7 bits (888), Expect = 6.0e-92 Identity = 171/180 (95.00%), Postives = 176/180 (97.78%), Query Frame = 0
BLAST of Carg21474 vs. ExPASy TrEMBL
Match: A0A0A0LRT8 (Riboflavin kinase OS=Cucumis sativus OX=3659 GN=Csa_1G071920 PE=4 SV=1) HSP 1 Score: 327.4 bits (838), Expect = 3.7e-86 Identity = 159/180 (88.33%), Postives = 172/180 (95.56%), Query Frame = 0
BLAST of Carg21474 vs. ExPASy TrEMBL
Match: A0A1S3B5C1 (Riboflavin kinase OS=Cucumis melo OX=3656 GN=LOC103485993 PE=4 SV=1) HSP 1 Score: 327.0 bits (837), Expect = 4.9e-86 Identity = 159/180 (88.33%), Postives = 171/180 (95.00%), Query Frame = 0
BLAST of Carg21474 vs. ExPASy TrEMBL
Match: A0A6J1CG93 (Riboflavin kinase OS=Momordica charantia OX=3673 GN=LOC111010948 PE=4 SV=1) HSP 1 Score: 318.2 bits (814), Expect = 2.3e-83 Identity = 156/180 (86.67%), Postives = 168/180 (93.33%), Query Frame = 0
BLAST of Carg21474 vs. TAIR 10
Match: AT4G21470.1 (riboflavin kinase/FMN hydrolase ) HSP 1 Score: 239.2 bits (609), Expect = 2.6e-63 Identity = 112/176 (63.64%), Postives = 142/176 (80.68%), Query Frame = 0
BLAST of Carg21474 vs. TAIR 10
Match: AT4G25840.1 (glycerol-3-phosphatase 1 ) HSP 1 Score: 79.3 bits (194), Expect = 3.4e-15 Identity = 47/176 (26.70%), Postives = 95/176 (53.98%), Query Frame = 0
BLAST of Carg21474 vs. TAIR 10
Match: AT5G57440.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ) HSP 1 Score: 79.0 bits (193), Expect = 4.5e-15 Identity = 51/189 (26.98%), Postives = 100/189 (52.91%), Query Frame = 0
BLAST of Carg21474 vs. TAIR 10
Match: AT4G11570.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ) HSP 1 Score: 59.7 bits (143), Expect = 2.8e-09 Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 0
BLAST of Carg21474 vs. TAIR 10
Match: AT4G11570.2 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ) HSP 1 Score: 59.7 bits (143), Expect = 2.8e-09 Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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