Carg21467 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21467
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Wound-responsive family protein
Location	Carg_Chr13: 7475721 .. 7475957 (-)
RNA-Seq Expression	Carg21467
Synteny	Carg21467

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCGTAGATTTTACAAGGGCGAGATCAGCGGAATGAAAGATCCGACGGCGAAGCGTGAGGCGATGTTGAAGGCGGTGAGAGATCATTCGGGATCATCTTCGAATCAGGGGGCAAGGGGATTTTACAGTGGTATGGATTCGAGTGCGGCAATGGCTGCCAAGGCGGAGAAGCTTAAGCGGGCCGAGGAGTCTCTCAGAACGGTTATGTATTTGAGCTGTTGGGGGCCTAACTAA

mRNA sequence

ATGAGCCGTAGATTTTACAAGGGCGAGATCAGCGGAATGAAAGATCCGACGGCGAAGCGTGAGGCGATGTTGAAGGCGGTGAGAGATCATTCGGGATCATCTTCGAATCAGGGGGCAAGGGGATTTTACAGTGGTATGGATTCGAGTGCGGCAATGGCTGCCAAGGCGGAGAAGCTTAAGCGGGCCGAGGAGTCTCTCAGAACGGTTATGTATTTGAGCTGTTGGGGGCCTAACTAA

Coding sequence (CDS)

ATGAGCCGTAGATTTTACAAGGGCGAGATCAGCGGAATGAAAGATCCGACGGCGAAGCGTGAGGCGATGTTGAAGGCGGTGAGAGATCATTCGGGATCATCTTCGAATCAGGGGGCAAGGGGATTTTACAGTGGTATGGATTCGAGTGCGGCAATGGCTGCCAAGGCGGAGAAGCTTAAGCGGGCCGAGGAGTCTCTCAGAACGGTTATGTATTTGAGCTGTTGGGGGCCTAACTAA

Protein sequence

MSRRFYKGEISGMKDPTAKREAMLKAVRDHSGSSSNQGARGFYSGMDSSAAMAAKAEKLKRAEESLRTVMYLSCWGPN

Homology

[Close]

BLAST of Carg21467 vs. NCBI nr
Match: KAG7019649.1 (hypothetical protein SDJN02_18612, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.5 bits (389), Expect = 3.9e-34
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSRRFYKGEISGMKDPTAKREAMLKAVRDHSGSSSNQGARGFYSGMDSSAAMAAKAEKLK 60
          MSRRFYKGEISGMKDPTAKREAMLKAVRDHSGSSSNQGARGFYSGMDSSAAMAAKAEKLK
Sbjct: 1  MSRRFYKGEISGMKDPTAKREAMLKAVRDHSGSSSNQGARGFYSGMDSSAAMAAKAEKLK 60

Query: 61 RAEESLRTVMYLSCWGPN 79
          RAEESLRTVMYLSCWGPN
Sbjct: 61 RAEESLRTVMYLSCWGPN 78

[Close]

BLAST of Carg21467 vs. NCBI nr
Match: KAG6584036.1 (hypothetical protein SDJN03_19968, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.5 bits (319), Expect = 5.1e-26
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSRRFYKGEISGMKDPTAKREAMLKAVRDHSGSSSNQGARGFYSGMDSSAAMAAKAEKLK 60
          MSRRFYKGEISGMKDPTAKREAMLKAVRDHSGSSSNQGARGFYSGMDSSAAMAAKAEKLK
Sbjct: 1  MSRRFYKGEISGMKDPTAKREAMLKAVRDHSGSSSNQGARGFYSGMDSSAAMAAKAEKLK 60

Query: 61 RAEESLR 68
          RAEESLR
Sbjct: 61 RAEESLR 67

[Close]

BLAST of Carg21467 vs. NCBI nr
Match: KAG6573231.1 (hypothetical protein SDJN03_27118, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012404.1 hypothetical protein SDJN02_25156, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.4 bits (220), Expect = 1.5e-14
Identity = 50/78 (64.10%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 1   MSRRFYKGEISGMKDPTAKREAMLKAVRDHSGSSSNQGARGFYSGMDSSAAMAAKAEKLK 60
           +S   Y GE  GM D  A+RE   K +RD SGSSS     GF S + S AAMAAKAEK+K
Sbjct: 54  LSLPLYGGETGGMNDQRAEREPAAKGLRDPSGSSSQ--TTGFCSAVGSIAAMAAKAEKVK 113

Query: 61  RAEESLRTVMYLSCWGPN 79
           RAEESLRTVMYLSCWGPN
Sbjct: 114 RAEESLRTVMYLSCWGPN 129

[Close]

BLAST of Carg21467 vs. NCBI nr
Match: KAE7995563.1 (hypothetical protein FH972_000343 [Carpinus fangiana])

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-10
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 0


Query: 1  MSRRFYKGEISGMKDPTAKREAMLKAVRDHSGSSSNQGARGFYSGMDSSAAMAAKAEKLK 60
          MS ++    + GMKD  +K ++ +K++RD   SSS++ A+ F    DS+A  AA  EK+K
Sbjct: 1  MSLKYMSRVLQGMKDQASKCDSTVKSLRDSPCSSSSKQAKLFSGAFDSAALKAANNEKIK 60

Query: 61 RAEESLRTVMYLSCWGPN 79
          +AEES RTVMYLSCWGPN
Sbjct: 61 QAEESFRTVMYLSCWGPN 78

[Close]

BLAST of Carg21467 vs. NCBI nr
Match: OMO65041.1 (hypothetical protein COLO4_31599 [Corchorus olitorius])

HSP 1 Score: 74.7 bits (182), Expect = 3.9e-10
Identity = 38/67 (56.72%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 12 GMKDPTAKREAMLKAVRDHSGSSSNQGARGFYSGMDSSAAMAAKAEKLKRAEESLRTVMY 71
          GMKD  +K E+ L++++D + SSS++ AR F + +DS A  AA  E+L++AEESLRTVMY
Sbjct: 20 GMKDQASKCESNLRSLKDSASSSSSKQARRFSNTVDSGAFKAATNERLRQAEESLRTVMY 79

Query: 72 LSCWGPN 79
          LSCWGPN
Sbjct: 80 LSCWGPN 86

[Close]

BLAST of Carg21467 vs. ExPASy TrEMBL
Match: A0A5N6QBJ8 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_000343 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.5e-11
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 0


Query: 1  MSRRFYKGEISGMKDPTAKREAMLKAVRDHSGSSSNQGARGFYSGMDSSAAMAAKAEKLK 60
          MS ++    + GMKD  +K ++ +K++RD   SSS++ A+ F    DS+A  AA  EK+K
Sbjct: 1  MSLKYMSRVLQGMKDQASKCDSTVKSLRDSPCSSSSKQAKLFSGAFDSAALKAANNEKIK 60

Query: 61 RAEESLRTVMYLSCWGPN 79
          +AEES RTVMYLSCWGPN
Sbjct: 61 QAEESFRTVMYLSCWGPN 78

[Close]

BLAST of Carg21467 vs. ExPASy TrEMBL
Match: A0A1R3H3Y0 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_31599 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 38/67 (56.72%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 12 GMKDPTAKREAMLKAVRDHSGSSSNQGARGFYSGMDSSAAMAAKAEKLKRAEESLRTVMY 71
          GMKD  +K E+ L++++D + SSS++ AR F + +DS A  AA  E+L++AEESLRTVMY
Sbjct: 20 GMKDQASKCESNLRSLKDSASSSSSKQARRFSNTVDSGAFKAATNERLRQAEESLRTVMY 79

Query: 72 LSCWGPN 79
          LSCWGPN
Sbjct: 80 LSCWGPN 86

[Close]

BLAST of Carg21467 vs. ExPASy TrEMBL
Match: B9H210 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G033300 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 10 ISGMKDPTAKRE-AMLKAVRDHSGSSSNQGARGFYSGMDSSAAMAAKAEKLKRAEESLRT 69
          + GMKD  +K + + +K++RD + SSS++ AR F   +DSSA M AK EK K+AEESLRT
Sbjct: 18 VQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSAYMNAKNEKFKQAEESLRT 77

Query: 70 VMYLSCWGPN 79
          VM+LSCWGPN
Sbjct: 78 VMFLSCWGPN 87

[Close]

BLAST of Carg21467 vs. ExPASy TrEMBL
Match: A0A7N2LSL0 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 43/82 (52.44%), Postives = 58/82 (70.73%), Query Frame = 0


Query: 1  MSRRFYKG---EISGMKDPTAKREAMLKAVRDHS-GSSSNQGARGFYSGMDSSAAMAAKA 60
          MSR  Y+     I GMKD  +K ++ + ++RD +  SSS++ AR F +  DS+A  AA +
Sbjct: 1  MSRSLYQSGMRVIQGMKDQASKCDSTVNSLRDSAYSSSSSKQARLFSTACDSAAYKAANS 60

Query: 61 EKLKRAEESLRTVMYLSCWGPN 79
          EK+K+AEESLRTVMYLSCWGPN
Sbjct: 61 EKIKQAEESLRTVMYLSCWGPN 82

[Close]

BLAST of Carg21467 vs. ExPASy TrEMBL
Match: A0A5N5MZZ3 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_005484 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.2e-10
Identity = 42/82 (51.22%), Postives = 58/82 (70.73%), Query Frame = 0


Query: 1  MSRRFYKG---EISGMKDPTAKRE-AMLKAVRDHSGSSSNQGARGFYSGMDSSAAMAAKA 60
          MSR  Y+     + GMKD  +K + + +K++RD + SSS++ AR F   +DSS  M A++
Sbjct: 6  MSRVLYQSGMRVVQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSVFMDARS 65

Query: 61 EKLKRAEESLRTVMYLSCWGPN 79
          EK K+AEESLRTVM+LSCWGPN
Sbjct: 66 EKFKQAEESLRTVMFLSCWGPN 87

[Close]

BLAST of Carg21467 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 53.9 bits (128), Expect = 6.7e-08
Identity = 31/76 (40.79%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 8  GEISGMKDP--TAKREAMLKAVRDH---SGSSSNQGARGFYSGMDSSAAMAAKAEKLKRA 67
          G +  +KD     +   +L++V  H   +  S +QG R   S + ++   + ++EK K+A
Sbjct: 15 GAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAAVTSSGESEKAKKA 74

Query: 68 EESLRTVMYLSCWGPN 79
          EESLRTVMYLSCWGPN
Sbjct: 75 EESLRTVMYLSCWGPN 90

[Close]

BLAST of Carg21467 vs. TAIR 10
Match: AT4G05070.1 (Wound-responsive family protein )

HSP 1 Score: 50.8 bits (120), Expect = 5.6e-07
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 17 TAKREAMLKAVRDHSGSSSNQGARGFYSGMDSSAAMAAKAEKLKRAEESLRTVMYLSCWG 76
          T  R A+ ++V     +SS+   R     ++SS   AA +E+L++AEESLRTVM+LSCWG
Sbjct: 26 TTLRSAVKESVSSPQSASSSSSVRRLKGDLESSRFGAAASERLRQAEESLRTVMFLSCWG 85

[Close]

BLAST of Carg21467 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 41.2 bits (95), Expect = 4.5e-04
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 0


Query: 34 SSNQGARGFYSGMDSSAAMAAKA----EKLKRAEESLRTVMYLSCWGPN 79
          S+NQ  R     +  +  +++ +     K K+AEESLRTVMYLSCWGP+
Sbjct: 35 SANQYLRNNLRSVSQAKKLSSSSIDYTNKTKQAEESLRTVMYLSCWGPS 83

The following BLAST results are available for this feature:

BLAST of Carg21467 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019649.1	3.9e-34	100.00	hypothetical protein SDJN02_18612, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6584036.1	5.1e-26	100.00	hypothetical protein SDJN03_19968, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6573231.1	1.5e-14	64.10	hypothetical protein SDJN03_27118, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE7995563.1	1.8e-10	50.00	hypothetical protein FH972_000343 [Carpinus fangiana]	[more]
OMO65041.1	3.9e-10	56.72	hypothetical protein COLO4_31599 [Corchorus olitorius]	[more]

BLAST of Carg21467 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg21467 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N6QBJ8	8.5e-11	50.00	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_000343 PE=4 SV=1	[more]
A0A1R3H3Y0	1.9e-10	56.72	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_31599 PE=4 SV=1	[more]
B9H210	1.9e-10	57.14	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G033300 PE=4 ...	[more]
A0A7N2LSL0	1.9e-10	52.44	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A5N5MZZ3	3.2e-10	51.22	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_005484 PE=4 SV=1	[more]

BLAST of Carg21467 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10270.1	6.7e-08	40.79	Wound-responsive family protein	[more]
AT4G05070.1	5.6e-07	45.00	Wound-responsive family protein	[more]
AT4G10265.1	4.5e-04	44.90	Wound-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 12..77 e-value: 8.9E-13 score: 49.1
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 1..78
None	No IPR available	PANTHER	PTHR33090:SF41	WOUND-RESPONSIVE FAMILY PROTEIN	coord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21467-RA	Carg21467-RA	mRNA