Carg21180 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21180
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr01: 11086748 .. 11086993 (-)
RNA-Seq ExpressionCarg21180
SyntenyCarg21180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAATCAGTACTCAACAATGCTGAATCCGACCTCAAATTCAATAACACAGTCGATATCGAAGTTCTTCGTCATACTCATACATCATCTGTTATTGTAATCATTCATAAGCTTTTTCCAGCAGTTTAGTGTTTATTATGCAAATAAGTTCTACAGCCTCCATTGATTTTTTCTTGTGTGTAGTTCTGGCTTTTCGAAGACCTCGTCATGCACCGGACCCGAATCAAGCTGCCGTTGTTGTAG

mRNA sequence

ATGGAGGAATCAGTACTCAACAATGCTGAATCCGACCTCAAATTCAATAACACAGTCGATATCGAAGTTCTTCGTCATACTCATACATCATCTGTTATTTTCTGGCTTTTCGAAGACCTCGTCATGCACCGGACCCGAATCAAGCTGCCGTTGTTGTAG

Coding sequence (CDS)

ATGGAGGAATCAGTACTCAACAATGCTGAATCCGACCTCAAATTCAATAACACAGTCGATATCGAAGTTCTTCGTCATACTCATACATCATCTGTTATTTTCTGGCTTTTCGAAGACCTCGTCATGCACCGGACCCGAATCAAGCTGCCGTTGTTGTAG

Protein sequence

MEESVLNNAESDLKFNNTVDIEVLRHTHTSSVIFWLFEDLVMHRTRIKLPLL
Homology
[Close]
BLAST of Carg21180 vs. NCBI nr
Match: KAG7037571.1 (hypothetical protein SDJN02_01199, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.0 bits (258), Expect = 4.0e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MEESVLNNAESDLKFNNTVDIEVLRHTHTSSVIFWLFEDLVMHRTRIKLPLL 53
          MEESVLNNAESDLKFNNTVDIEVLRHTHTSSVIFWLFEDLVMHRTRIKLPLL
Sbjct: 1  MEESVLNNAESDLKFNNTVDIEVLRHTHTSSVIFWLFEDLVMHRTRIKLPLL 52

[Close]
BLAST of Carg21180 vs. NCBI nr
Match: KAG6608212.1 (putative xyloglucan glycosyltransferase 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-18
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 2   EESVLNNAESDLKFNNTVDIEVLRHTHTSSVIFWLFEDLVMHRTRIKLPLL 53
           EESVLNNAESDLKFNNTVDIEVLRHTHTSSVIFWLFEDLVMHRTRIKLPLL
Sbjct: 663 EESVLNNAESDLKFNNTVDIEVLRHTHTSSVIFWLFEDLVMHRTRIKLPLL 713

The following BLAST results are available for this feature:
BLAST of Carg21180 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037571.14.0e-19100.00hypothetical protein SDJN02_01199, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6608212.11.5e-18100.00putative xyloglucan glycosyltransferase 5, partial [Cucurbita argyrosperma subsp... [more]
BLAST of Carg21180 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21180 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21180 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21180-RACarg21180-RAmRNA