Carg21163 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21163
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr01: 10992661 .. 10992909 (+)
RNA-Seq ExpressionCarg21163
SyntenyCarg21163
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCTGAGATTCTATGTCTGCCAAAGAAACTGTTCTTGCACGGAGAGGCAGATTTGGATTTAGATTTGACTTCGGCTTCGGCTTCGGCTTCTGAACTGACTTCTTCATCTTCTTCTCGCTTCGCCGATTTTTCTCCTCCACCTACCGGCGGTGATTGGTGGTGTTCATCCATTGTTGCAGGCAAATCAAATTCACAGAACTCAGATTCAACAACAATGGTGAGAAACTCTTGGAAATTAATATAG

mRNA sequence

ATGGCCGCTGAGATTCTATGTCTGCCAAAGAAACTGTTCTTGCACGGAGAGGCAGATTTGGATTTAGATTTGACTTCGGCTTCGGCTTCGGCTTCTGAACTGACTTCTTCATCTTCTTCTCGCTTCGCCGATTTTTCTCCTCCACCTACCGGCGGTGATTGGTGGTGTTCATCCATTGTTGCAGGCAAATCAAATTCACAGAACTCAGATTCAACAACAATGGTGAGAAACTCTTGGAAATTAATATAG

Coding sequence (CDS)

ATGGCCGCTGAGATTCTATGTCTGCCAAAGAAACTGTTCTTGCACGGAGAGGCAGATTTGGATTTAGATTTGACTTCGGCTTCGGCTTCGGCTTCTGAACTGACTTCTTCATCTTCTTCTCGCTTCGCCGATTTTTCTCCTCCACCTACCGGCGGTGATTGGTGGTGTTCATCCATTGTTGCAGGCAAATCAAATTCACAGAACTCAGATTCAACAACAATGGTGAGAAACTCTTGGAAATTAATATAG

Protein sequence

MAAEILCLPKKLFLHGEADLDLDLTSASASASELTSSSSSRFADFSPPPTGGDWWCSSIVAGKSNSQNSDSTTMVRNSWKLI
Homology
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BLAST of Carg21163 vs. NCBI nr
Match: KAG7037554.1 (hypothetical protein SDJN02_01182, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.9 bits (411), Expect = 1.1e-36
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MAAEILCLPKKLFLHGEADLDLDLTSASASASELTSSSSSRFADFSPPPTGGDWWCSSIV 60
          MAAEILCLPKKLFLHGEADLDLDLTSASASASELTSSSSSRFADFSPPPTGGDWWCSSIV
Sbjct: 1  MAAEILCLPKKLFLHGEADLDLDLTSASASASELTSSSSSRFADFSPPPTGGDWWCSSIV 60

Query: 61 AGKSNSQNSDSTTMVRNSWKLI 83
          AGKSNSQNSDSTTMVRNSWKLI
Sbjct: 61 AGKSNSQNSDSTTMVRNSWKLI 82

The following BLAST results are available for this feature:
BLAST of Carg21163 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037554.11.1e-36100.00hypothetical protein SDJN02_01182, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg21163 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21163 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21163 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21163-RACarg21163-RAmRNA