Carg21128 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21128
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionChromatin-remodeling ATPase INO80
LocationCarg_Chr07: 7996352 .. 7996726 (+)
RNA-Seq ExpressionCarg21128
SyntenyCarg21128
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAACTGCAACTGGAAACTTTGGGCAACTTGGTTTTAAGATCTCAAAAGTACGTAGATGGTCTCGAGCACTTACGATCTCGAAGATGGTATGTAGATCTCAAAGTGGAAACTTTGAGGAGAATGCTTGAAAGGGAATGTCCAAAGAGGACCGTATCTGTTAGCGGGGGGTTTGAGAGAATGCTGACCCCCAAGGGGGTGGTGGTGGGGGGAGGGAGTTCCCACATCGATTGGAGAAGGGAACGAGTGCTAGAGAGGATGTTGGGCCCCGAAGGGGGGTAGACACGAGGCAGTGTGCCAACAAGGATGTTGGGTCTCGAAGGGCGGTGGATTGGGGGTCTTACATCGATTGGCAAAGAAAAGAGTGCCAGTGA

mRNA sequence

ATGAGAACTGCAACTGGAAACTTTGGGCAACTTGGTTTTAAGATCTCAAAAGTACGTAGATGGTCTCGAGCACTTACGATCTCGAAGATGAATGCTGACCCCCAAGGGGGTGGTGGTGGGGGGAGGGAGTTCCCACATCGATTGGAGAAGGGAACGAGTGCTAGAGAGGATGTTGGGCCCCGAAGGGGGGTAGACACGAGGCAGTGTGCCAACAAGGATGTTGGGTCTCGAAGGGCGGTGGATTGGGGGTCTTACATCGATTGGCAAAGAAAAGAGTGCCAGTGA

Coding sequence (CDS)

ATGAGAACTGCAACTGGAAACTTTGGGCAACTTGGTTTTAAGATCTCAAAAGTACGTAGATGGTCTCGAGCACTTACGATCTCGAAGATGAATGCTGACCCCCAAGGGGGTGGTGGTGGGGGGAGGGAGTTCCCACATCGATTGGAGAAGGGAACGAGTGCTAGAGAGGATGTTGGGCCCCGAAGGGGGGTAGACACGAGGCAGTGTGCCAACAAGGATGTTGGGTCTCGAAGGGCGGTGGATTGGGGGTCTTACATCGATTGGCAAAGAAAAGAGTGCCAGTGA

Protein sequence

MRTATGNFGQLGFKISKVRRWSRALTISKMNADPQGGGGGGREFPHRLEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRKECQ
Homology
[Close]
BLAST of Carg21128 vs. NCBI nr
Match: KAG7027640.1 (hypothetical protein SDJN02_11655, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200.7 bits (509), Expect = 5.7e-48
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MRTATGNFGQLGFKISKVRRWSRALTISKMNADPQGGGGGGREFPHRLEKGTSAREDVGP 60
          MRTATGNFGQLGFKISKVRRWSRALTISKMNADPQGGGGGGREFPHRLEKGTSAREDVGP
Sbjct: 1  MRTATGNFGQLGFKISKVRRWSRALTISKMNADPQGGGGGGREFPHRLEKGTSAREDVGP 60

Query: 61 RRGVDTRQCANKDVGSRRAVDWGSYIDWQRKECQ 95
          RRGVDTRQCANKDVGSRRAVDWGSYIDWQRKECQ
Sbjct: 61 RRGVDTRQCANKDVGSRRAVDWGSYIDWQRKECQ 94

[Close]
BLAST of Carg21128 vs. NCBI nr
Match: XP_022925142.1 (DNA helicase INO80-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 57.4 bits (137), Expect = 7.8e-05
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 48   LEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRK 92
            L+ G  A ++  PRR VDTR CA+KDVG RR VDW S+I+W+R+
Sbjct: 1481 LDTGRCASKEAKPRRRVDTRWCASKDVGLRRGVDWESHINWRRE 1524

[Close]
BLAST of Carg21128 vs. NCBI nr
Match: XP_022925146.1 (DNA helicase INO80-like isoform X5 [Cucurbita moschata])

HSP 1 Score: 57.4 bits (137), Expect = 7.8e-05
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 48   LEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRK 92
            L+ G  A ++  PRR VDTR CA+KDVG RR VDW S+I+W+R+
Sbjct: 1416 LDTGRCASKEAKPRRRVDTRWCASKDVGLRRGVDWESHINWRRE 1459

[Close]
BLAST of Carg21128 vs. NCBI nr
Match: XP_022925143.1 (DNA helicase INO80-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 57.4 bits (137), Expect = 7.8e-05
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 48   LEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRK 92
            L+ G  A ++  PRR VDTR CA+KDVG RR VDW S+I+W+R+
Sbjct: 1475 LDTGRCASKEAKPRRRVDTRWCASKDVGLRRGVDWESHINWRRE 1518

[Close]
BLAST of Carg21128 vs. ExPASy TrEMBL
Match: A0A6J1EBE0 (Chromatin-remodeling ATPase INO80 OS=Cucurbita moschata OX=3662 GN=LOC111432477 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.8e-05
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 48   LEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRK 92
            L+ G  A ++  PRR VDTR CA+KDVG RR VDW S+I+W+R+
Sbjct: 1416 LDTGRCASKEAKPRRRVDTRWCASKDVGLRRGVDWESHINWRRE 1459

[Close]
BLAST of Carg21128 vs. ExPASy TrEMBL
Match: A0A6J1EAZ7 (Chromatin-remodeling ATPase INO80 OS=Cucurbita moschata OX=3662 GN=LOC111432477 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.8e-05
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 48   LEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRK 92
            L+ G  A ++  PRR VDTR CA+KDVG RR VDW S+I+W+R+
Sbjct: 1481 LDTGRCASKEAKPRRRVDTRWCASKDVGLRRGVDWESHINWRRE 1524

[Close]
BLAST of Carg21128 vs. ExPASy TrEMBL
Match: A0A6J1EEE8 (Chromatin-remodeling ATPase INO80 OS=Cucurbita moschata OX=3662 GN=LOC111432477 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.8e-05
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 48   LEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRK 92
            L+ G  A ++  PRR VDTR CA+KDVG RR VDW S+I+W+R+
Sbjct: 1475 LDTGRCASKEAKPRRRVDTRWCASKDVGLRRGVDWESHINWRRE 1518

The following BLAST results are available for this feature:
BLAST of Carg21128 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027640.15.7e-48100.00hypothetical protein SDJN02_11655, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022925142.17.8e-0556.82DNA helicase INO80-like isoform X1 [Cucurbita moschata][more]
XP_022925146.17.8e-0556.82DNA helicase INO80-like isoform X5 [Cucurbita moschata][more]
XP_022925143.17.8e-0556.82DNA helicase INO80-like isoform X2 [Cucurbita moschata][more]
BLAST of Carg21128 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21128 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EBE03.8e-0556.82Chromatin-remodeling ATPase INO80 OS=Cucurbita moschata OX=3662 GN=LOC111432477 ... [more]
A0A6J1EAZ73.8e-0556.82Chromatin-remodeling ATPase INO80 OS=Cucurbita moschata OX=3662 GN=LOC111432477 ... [more]
A0A6J1EEE83.8e-0556.82Chromatin-remodeling ATPase INO80 OS=Cucurbita moschata OX=3662 GN=LOC111432477 ... [more]
BLAST of Carg21128 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21128-RACarg21128-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006974 cellular response to DNA damage stimulus
biological_process GO:0090304 nucleic acid metabolic process
cellular_component GO:0005634 nucleus
molecular_function GO:0140657 ATP-dependent activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0000166 nucleotide binding